Detailed information of amic_s0049.g87.t1 in Acropora microphthalma

Genomic Location: sc0000049_pilon:1092592...1115422
NR annotation: XP_044175212.1, polycystic kidney disease and receptor for egg jelly-related protein-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9NTG1Polycystin family receptor for egg jelly OS=Homo sapiens OX=9606 GN=PKDREJ PE=1 SV=2
Q9Z0T6Polycystin family receptor for egg jelly OS=Mus musculus OX=10090 GN=Pkdrej PE=2 SV=2
Q2EG98Polycystin-1-like protein 3 OS=Mus musculus OX=10090 GN=Pkd1l3 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005667 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00801
all species →		PKDPKD domainDomainInterproscan
PF01825
all species →		GPSGPCR proteolysis site, GPS, motif MotifInterproscan
PF01477
all species →		PLATPLAT/LH2 domainDomainInterproscan
PF20519
all species →		Polycystin_domPolycystin domainDomainInterproscan
PF02010
all species →		REJREJ domainFamilyInterproscan
PF08016
all species →		PKD_channelPolycystin cation channelFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000601
all species →		DomainPKD domainInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR000203
all species →		Conserved_siteGPS motifInterproscan
IPR035986
all species →		Homologous_superfamilyPKD domain superfamilyInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR046338
all species →		Homologous_superfamilyGAIN domain superfamilyInterproscan
IPR022409
all species →		DomainPKD/Chitinase domainInterproscan
IPR001024
all species →		DomainPLAT/LH2 domainInterproscan
IPR000434
all species →		FamilyPolycystic kidney disease type 1 proteinInterproscan
IPR046791
all species →		DomainPolycystin domainInterproscan
IPR002859
all species →		DomainPKD/REJ-like domainInterproscan
IPR014010
all species →		DomainREJ domainInterproscan
IPR013122
all species →		DomainPolycystin cation channel, PKD1/PKD2Interproscan
IPR036392
all species →		Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46730
all species →		POLYCYSTIN-1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0005261
all species →		Molecular Functionmonoatomic cation channel activityInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0006816
all species →		Biological Processcalcium ion transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04988PKD1L2; polycystin 1L2-Ion channelsko04040deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP