Gene detail

Detailed information of amic_s0050.g114.t1 in Acropora microphthalma

Genomic Location: sc0000050_pilon:1129514...1142673
NR annotation: XP_029184845.2, endo-1,4-beta-xylanase 3-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0050.g114.t1

ATGAAAGTTCTTGCAGTAGTTGTTTTGGTTTCGGTAGTTGCTCTCTCGCGACCCCACAAGGCCTATGATCACCTTGGTTGCTGGAAAGATGTCATTCATGATGATGATCTCAGCTTTCTACCACAAATTAAGCGTCTGAGGTTAAAAGATAGATTATCACAAATAGATCAATGCGCCAAGTCAGCCATAGAGCGTGGGATCCCTGTGTTTGGAATTCGGAACAATTCAGTTTGTGTTGGAAGCGTTCATGCTTCATTCACTTACACGCGGTATGGTCCTTCAACACAGTGCTACAATGGCACAGGTGGGCCAGCATCAGTGGATGTCTACGGCTTCGATGGAAACTCACCTTATCACAACACAGCTGACGAGGAAGAAGATGGAGAAAAACGAAACTTTATCTACGACTTATATACTTCATCGTATGCTCAGAAGAAAGCTGCTTTTTCTATGAATATACCGTCAAATGCTGCAAAACATCCCTTGGTTAGAAATGGTCACGTGAGGCCAATCTTTCTGCAACCATTGTACAAGGAGATCGACGAGCGGGAGTTTGGAGCATACAAACCTCCAATAAGTGGAACAAACGTATTAATCAACCCCAGCTTTGAACAGCCTCTGGTGAATGATCCAATCAGAGGATGGAGTTGTCAAGGAGAAACTGATGATCCACGTGGCGGTGTTATTGCACGGTACACCCGTGAGAATCCAAAACAAGGGAAATACAGTGGCATATGTCTGGCTAGACTCTCTGAATGGGCTGGTCCAGGACAGTATATTGGGAATCGAGTCGTGTCAGGTCGCGTCTACAAATTTGAAGGATGGACAAAAATTCTTGATCGCAAGAGAACCGGAGATATTCATAACCTTGAGCTTTGGGTTCGTTTTAAGAAAAGAGACAGCAAGGTACAGAGAAGCAAAAGACTTGCGCGAAGAACCAAATTCTCACAAGATTATGGTTGGGTTCATTGGCACACAGCGTTCGAAATGCCATTTGCAAGAACAGGATTCCAGTACGTGTTCATCTACTTCAAGGGACCCAAGTCAACAATAGACATTGTATTGGATGATATCTTTTTAGGAGAAATCCCACAACGTCCTGATTGGAAAGCGTATAGTGACCTATTGATAAACAGAAATAGAAAAAGAAATATAGAGTTCAGAGTAAACATTACTGGCTCTCGATACACAACAGATCTTCTTCCTAATCTTAAACTAACAGTCAAGCAAGAGTCTCACCTATTTGCTTTCGGAGCTGCTGTTAACAGTAATTTTCTTTTAACAAAACCGAAATATCGGGACTTCTATTTGACTAACTTTCAATGGGCGGTGTTGGAGAGCTCCCTCAAATGGGGTGTTGTCGAACCAAAGCAGGGTCTGACAAATTACGTCACTGCTGATAAAGCTGTAGATTTTCTTCAAGCTCACAACAAACTAATCCGCGGTCATTGTGTCTTCTGGGCGGTTGACACCGAAGTACCATTTTGGGTCAAGAGAATTTCCAACAAACAACTCAAGGAAGAACTCAAAGACAGAATAACAAGTCTGCTCGGTCGATATAAAGGACGTTTCATGCAATGGGATGTAAACAATGAGATGCTTCATGGTTCATATTTTGCCGACAGAGAAGGTCTTTCTATTCGCGACTGGATGTATTCGGTCGCTGGAAAAATAGATCCTGATGTGGATTTGTTTGTCAATGACTTTGATGTTGTAGAAAACGGGCAACTAACTCAGGCTTTAGTCGAGGAAGTCCAAGATTTGCTGTTAAGAGGAATACCACTGGATGGAATCGGCGTCCAAGGTCATTTTACAGGCCCTGTTAATCCAACATTACTTTCATATCGCCTCAAAATTCTTAGTGAAGCTGGGTTACCGATATGGCTAACAGAAGTCGACGTTCTTGAAGTGGATCCCCTGAAGAGAGCTGAAAGCCTTGAAGTGATCATGCGTAGTGCTTTTAGTAATCCAAGCGTTCAGGGATTGATTCTTTGGAGCTTTTGGAATCAAAGTTCTTGGAGAGGTCCCTATACTTCCCTAGTTGACGGCAACGAATGGAAGATAAATGCTGCTGGTCAGCGGTATCGCGATTTACTGAAACAATGGACTACGCACGTCACTTTAGCGCCCACAATTACAGACTCTTCAAATGCTCACTTTGAAACACGTGGTTTCTTCGGTGACTATGACGTGGAACTTGAACTCTCAAATGGACTGAGGTCTACTCAGAAATTCACTCTTAATCCTGGAAACGGTCCTCTTTTTATATATCTTCATCTCCCAGATCCAACCTCTTCCAAAACAAGCTCAGATTTTCCTTCGAGTATAGCAAATGCTAATATTGTTACTCAAATGCCGATAATGCAAAATACGGGAAATCAAGATCTCGGTGAATTTCAAACAGATCAAGGCCAAGATGAGGAATTTCTGGAATTCAATAATTCCAACGAACTAACAGATTCTTTCAAGACTTTAACTGGATCATACGTTGGTTGTTTCGACAACTCGAATCCTCTGCGACAGCTCCAATACAGATACGCAGAACATCCAGCCATGACACCTGATGTGTGTGTTAAACACTGTCTCTACAAAGGGTATCCGTTTGCTGGGCTTTTATTGGCGTCTGAATGCTTTTGTGGTCTTTATTTCAATGACGATGCTGAGGTTAGCGATGAATTGTGCAAGTTCCCTTGTCAGGGAGACTTTCGAAGGAGTTGTGGCGGACAAAGAGACATTGCAATTTACTCTACAAGTTAA

Transcript

amic_s0050.g114.t1

AACATAAATCGGAGACGGCGACGCAAGGAATAGACGATTTGTGAACCAGCGCGAGGGCAAGCCTTTTATTCTTGATGAATCTGCATCACAAAGGGAGATTAACTTTTTTAGCCATGCAATGATTCCTTGATAGAATTTTGCCACAAAGACAGCGACAGCTCCCGAGAAAGAGTCTTCGTTCGATCAAAACAAAATCCATCCACTGAAGATTGCATACGAATTTAATTCAAGTTACGGATGCAGTGTAATCGACTGGCATATCAAGACAAACGCTGAGTTTGACGGTTGATAATTTCTCAAATGGAATTTCAGCAGTGGTTGCATTCCAACAGATTTTCTATTGGAGCGAGAAGAGGAAGACTATGAAAGCTCCATGAAAGTTCTTGCAGTAGTTGTTTTGGTTTCGGTAGTTGCTCTCTCGCGACCCCACAAGGCCTATGATCACCTTGGTTGCTGGAAAGATGTCATTCATGATGATGATCTCAGCTTTCTACCACAAATTAAGCGTCTGAGGTTAAAAGATAGATTATCACAAATAGATCAATGCGCCAAGTCAGCCATAGAGCGTGGGATCCCTGTGTTTGGAATTCGGAACAATTCAGTTTGTGTTGGAAGCGTTCATGCTTCATTCACTTACACGCGGTATGGTCCTTCAACACAGTGCTACAATGGCACAGGTGGGCCAGCATCAGTGGATGTCTACGGCTTCGATGGAAACTCACCTTATCACAACACAGCTGACGAGGAAGAAGATGGAGAAAAACGAAACTTTATCTACGACTTATATACTTCATCGTATGCTCAGAAGAAAGCTGCTTTTTCTATGAATATACCGTCAAATGCTGCAAAACATCCCTTGGTTAGAAATGGTCACGTGAGGCCAATCTTTCTGCAACCATTGTACAAGGAGATCGACGAGCGGGAGTTTGGAGCATACAAACCTCCAATAAGTGGAACAAACGTATTAATCAACCCCAGCTTTGAACAGCCTCTGGTGAATGATCCAATCAGAGGATGGAGTTGTCAAGGAGAAACTGATGATCCACGTGGCGGTGTTATTGCACGGTACACCCGTGAGAATCCAAAACAAGGGAAATACAGTGGCATATGTCTGGCTAGACTCTCTGAATGGGCTGGTCCAGGACAGTATATTGGGAATCGAGTCGTGTCAGGTCGCGTCTACAAATTTGAAGGATGGACAAAAATTCTTGATCGCAAGAGAACCGGAGATATTCATAACCTTGAGCTTTGGGTTCGTTTTAAGAAAAGAGACAGCAAGGTACAGAGAAGCAAAAGACTTGCGCGAAGAACCAAATTCTCACAAGATTATGGTTGGGTTCATTGGCACACAGCGTTCGAAATGCCATTTGCAAGAACAGGATTCCAGTACGTGTTCATCTACTTCAAGGGACCCAAGTCAACAATAGACATTGTATTGGATGATATCTTTTTAGGAGAAATCCCACAACGTCCTGATTGGAAAGCGTATAGTGACCTATTGATAAACAGAAATAGAAAAAGAAATATAGAGTTCAGAGTAAACATTACTGGCTCTCGATACACAACAGATCTTCTTCCTAATCTTAAACTAACAGTCAAGCAAGAGTCTCACCTATTTGCTTTCGGAGCTGCTGTTAACAGTAATTTTCTTTTAACAAAACCGAAATATCGGGACTTCTATTTGACTAACTTTCAATGGGCGGTGTTGGAGAGCTCCCTCAAATGGGGTGTTGTCGAACCAAAGCAGGGTCTGACAAATTACGTCACTGCTGATAAAGCTGTAGATTTTCTTCAAGCTCACAACAAACTAATCCGCGGTCATTGTGTCTTCTGGGCGGTTGACACCGAAGTACCATTTTGGGTCAAGAGAATTTCCAACAAACAACTCAAGGAAGAACTCAAAGACAGAATAACAAGTCTGCTCGGTCGATATAAAGGACGTTTCATGCAATGGGATGTAAACAATGAGATGCTTCATGGTTCATATTTTGCCGACAGAGAAGGTCTTTCTATTCGCGACTGGATGTATTCGGTCGCTGGAAAAATAGATCCTGATGTGGATTTGTTTGTCAATGACTTTGATGTTGTAGAAAACGGGCAACTAACTCAGGCTTTAGTCGAGGAAGTCCAAGATTTGCTGTTAAGAGGAATACCACTGGATGGAATCGGCGTCCAAGGTCATTTTACAGGCCCTGTTAATCCAACATTACTTTCATATCGCCTCAAAATTCTTAGTGAAGCTGGGTTACCGATATGGCTAACAGAAGTCGACGTTCTTGAAGTGGATCCCCTGAAGAGAGCTGAAAGCCTTGAAGTGATCATGCGTAGTGCTTTTAGTAATCCAAGCGTTCAGGGATTGATTCTTTGGAGCTTTTGGAATCAAAGTTCTTGGAGAGGTCCCTATACTTCCCTAGTTGACGGCAACGAATGGAAGATAAATGCTGCTGGTCAGCGGTATCGCGATTTACTGAAACAATGGACTACGCACGTCACTTTAGCGCCCACAATTACAGACTCTTCAAATGCTCACTTTGAAACACGTGGTTTCTTCGGTGACTATGACGTGGAACTTGAACTCTCAAATGGACTGAGGTCTACTCAGAAATTCACTCTTAATCCTGGAAACGGTCCTCTTTTTATATATCTTCATCTCCCAGATCCAACCTCTTCCAAAACAAGCTCAGATTTTCCTTCGAGTATAGCAAATGCTAATATTGTTACTCAAATGCCGATAATGCAAAATACGGGAAATCAAGATCTCGGTGAATTTCAAACAGATCAAGGCCAAGATGAGGAATTTCTGGAATTCAATAATTCCAACGAACTAACAGATTCTTTCAAGACTTTAACTGGATCATACGTTGGTTGTTTCGACAACTCGAATCCTCTGCGACAGCTCCAATACAGATACGCAGAACATCCAGCCATGACACCTGATGTGTGTGTTAAACACTGTCTCTACAAAGGGTATCCGTTTGCTGGGCTTTTATTGGCGTCTGAATGCTTTTGTGGTCTTTATTTCAATGACGATGCTGAGGTTAGCGATGAATTGTGCAAGTTCCCTTGTCAGGGAGACTTTCGAAGGAGTTGTGGCGGACAAAGAGACATTGCAATTTACTCTACAAGTTAAAAAAAAATAACTGAACAGTAACAATTTCATCTTAAAATATCTGTTAATGTTATGTGTACATTGCATTCATTAGAATAGATGTACTTACTAATGACACATCCACTTCACGATTACTCGTGTAAATCCATAGTAAACGTTGGGTGACAGTGTTGGAAAAAATAAGTTAATCGTATAAGAACTCAGCAGCAAAAATGGCACGTTTAAGCGGAGTAGAGTATTTCTCCATTTCATCAGTGCATAGCCGACCTTCAGCCTCCATTCCACATGTCAGTTGTGGGAGAATGGGCTGGTCTTCGTGCGCATAGAGACACCAGAACAGACAGCTATTATATGGGCAACTTCTGGCAGAGCGAACTGATCTTATCGACATAGTTCAATTTTCATTCATCGAAATAAAAGAAGACACATAGCACATGAGAAACTCCCGATATATTCTAGATATAAATGAAGAGGTAGACAAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F4JG10	Endo-1,4-beta-xylanase 3 OS=Arabidopsis thaliana OX=3702 GN=XYN3 PE=2 SV=1
A3DH97	Anti-sigma-I factor RsgI6 OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=rsgI6 PE=1 SV=1
A0A1P8AWH8	Endo-1,4-beta-xylanase 1 OS=Arabidopsis thaliana OX=3702 GN=XYN1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004312 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01822 all species →	WSC	WSC domain	Domain	Interproscan
PF00331 all species →	Glyco_hydro_10	Glycosyl hydrolase family 10	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044846 all species →	Family	Glycoside hydrolase family 10	Interproscan
IPR001000 all species →	Domain	Glycoside hydrolase family 10 domain	Interproscan
IPR002889 all species →	Domain	Carbohydrate-binding WSC	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31490 all species →	GLYCOSYL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01210	E3.2.1.58; glucan 1,3-beta-glucosidase	EC:3.2.1.58	Starch and sucrose metabolism	ko00500	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.