Gene detail

Detailed information of amic_s0050.g2.t1 in Acropora microphthalma

Genomic Location: sc0000050_pilon:30616...38009
NR annotation: XP_015752628.1, PREDICTED: E3 ubiquitin-protein ligase Topors-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0050.g2.t1

ATGGAAAGTCAAGGCAGACACTCACCAGAGAGCAACGAAACGGATACCTCTGCAGCAGATCAATCTTCAAGAAACCCTTATCAAGAAAGAAATGATTGTGGCAACTATACTACTCGACGCAATGATACCATTGCAACGCAGAGTTCTTCTTTGTCATCGTGTTCTAATATTGTGGAAATCACAAGCGACGATGAGGAACAGATTGTTGAAATTGAGGGAACACCACCAAAACAAGAAAATGAACATCCTCAAAGCTCTTCTCAGATGTCTTTAAGAAGGAAAAGTCCTCAGCTGGATGTTTCATGCCCAGTCTGTCTCAGTGAATACGACAACAAAGCTTTCTTGGACAAGTGTTTTCATGCCTTTTGCTACTTTTGTATATTACAATGGTCTGAGATAGTAAGGACATGCCCTCTGTGCAAGTCAAGCTTCACTTCCATTATACACAGTGTGAAATCTATGACTGATTACCAACAGCACTACCTCAAAGACACTTGCATGGCTCCTACATTAAGCCAGTCCCAAAATGATGGCAGACGGTTCCGTTTCAGATCAACTCAAGCAAATGTGAGAAGGCAACAACAAGAGACTCGTAGGCAATGGGGGGTTAGTGACTCACTTGCAAGGGGCCAGCAAGCACATCACTCCCAAGCTCGTTTCTTTGCCCAAAGAAACAGAGGGGTAGCAAATCGGGAGAGAAGGAGAGCAATTTACTCCAGCAATATGTGGGTGCAAAGAGTTGATCAAGATGGTCGTCGACGACAAAGAGACATATCACCAGAATTTTTTCGAATGAATCCTGCATGCACGCATCGCTTGATTCCTTGGATCACAAGAGACTTAAGTGTACTGCTCAGTGATGAAGAAAGCCATGTTGGTTTTGTTTTACAGATTATCTTGTCCCTCATTACCAAGGTTGAGCTGAGTTCTGAAGAGTTTTACCATCAGCTGCGACCCTTTCTGTTTGAGAAAACAGAACATTTCATTCATGAGTTCATTAGCTTTGCTCGTTCACCATTTGATTTGAATACGTATGACCAGCATGCACAGTACAGTTGGTATCATGAATCACAAACTGACCCAGTGAGAGACACTCCCACAGTATTTCACAGCAGTACCACAGATTGGCAATCTCCGTTACCTGGTCCTTCCGAAGTATCTCACTTAGAACTCTCACAAGTGGAATGGAACGCAGATTCTCCATTGCGTACCAATGACACAAGCTGGTCTCCGACGTCATCTCCAGGGACCACGCCCCTTAATGCGCCGACCGTGACCATTTCGTCGTCAAGTTCGCATTCGATGTCGACAGCGCATATTCGAACAGAGGTTAATGTGAACAATGCCTCGATTTCCACAGCTACATCTTACCCGAGAAATTCACCCTCCAAATTGGGAACAAGGAATGTGGATGATGTCAGGAAATCAAGAAGAACGCGAAGCCACCGACATCATGAACATTCTCACAAATATAGGCGAAAGCAAAAGAAGAGGGTTGAATCGGAACATCGCTCAAAAATACACGCGCACAGCTCTGATAGAGACTTAAACATGCCAGGGCCAAGTAACCCTGTGTCAGTTGATTCGTCTGTTTCCAGCAAATCAATTGAAATTATTTGGCTTAGTGACAGCAGCATTTCGAGGAATTCTTGCGACATTTTTTCTGGACGCAGTGCTTCTACAGTCAAGCGATTAAGCATACGATCACGTTCGAGATCTAAGAACAGAGACTCGCGAAAATCTAGACCTCGCTCCCTCTCCAGCTCGAGCGGAAATTGGAATATAAGCCATCAATCACGGTCTATTTCGGGATATCTGAAATCAAACTCGCGAAAACATTACCCTTCTGATTCTGAGAAAAGCAGAGGAGATAGACAATCACGTTACCGGTCAAAGAGTAAACGTGAGAAGTCGTCTTCTCACTCGAAACCTTGCTATAAGGACTTAAAAAGAAAGGAGGAAAGTAGAATAAATAGGTCGCGGTCACGTTCTTCATCACGCTCACACTCTCTATCGAAAAGAAAGCTACATTCAAGGAATTCTTCAAAATACTTTCGTAGCAAGAGGTATCGGACTCGATCGCCGGAACGAAATCCTTCGTCATCGTCTAGATTGTCAGAGTCGCGTTTGTCCGAAAGCCGCCCCCGAGTTCACGCTGTAGATCATTTCACAGGTTCAGGGTCTTCTACATCATCGTTACCAAAACAAGCCGCAAGGTCTCCAAACTCACGTCATAAGTTGTGTTGTCGTTCCTCTTCTCGTGACAAAGAGTCTGAACTCAAAGGGGAAATTCCTTGTGGTACTGAAGATATCAAACGAGAAATTGAAGATTTGGAACACCGAATTGCTGTTGATAAGAAGCGGCTGCTGCAGCTTCTAATCAAACAAGAGAAGAGTAAAGGAGGAGAATCAACGGAAGATGTTTGCGGAGAATAA

Transcript

amic_s0050.g2.t1

GTAAATTTCACTTTGTTATGGAAAGTCAAGGCAGACACTCACCAGAGAGCAACGAAACGGATACCTCTGCAGCAGATCAATCTTCAAGAAACCCTTATCAAGAAAGAAATGATTGTGGCAACTATACTACTCGACGCAATGATACCATTGCAACGCAGAGTTCTTCTTTGTCATCGTGTTCTAATATTGTGGAAATCACAAGCGACGATGAGGAACAGATTGTTGAAATTGAGGGAACACCACCAAAACAAGAAAATGAACATCCTCAAAGCTCTTCTCAGATGTCTTTAAGAAGGAAAAGTCCTCAGCTGGATGTTTCATGCCCAGTCTGTCTCAGTGAATACGACAACAAAGCTTTCTTGGACAAGTGTTTTCATGCCTTTTGCTACTTTTGTATATTACAATGGTCTGAGATAGTAAGGACATGCCCTCTGTGCAAGTCAAGCTTCACTTCCATTATACACAGTGTGAAATCTATGACTGATTACCAACAGCACTACCTCAAAGACACTTGCATGGCTCCTACATTAAGCCAGTCCCAAAATGATGGCAGACGGTTCCGTTTCAGATCAACTCAAGCAAATGTGAGAAGGCAACAACAAGAGACTCGTAGGCAATGGGGGGTTAGTGACTCACTTGCAAGGGGCCAGCAAGCACATCACTCCCAAGCTCGTTTCTTTGCCCAAAGAAACAGAGGGGTAGCAAATCGGGAGAGAAGGAGAGCAATTTACTCCAGCAATATGTGGGTGCAAAGAGTTGATCAAGATGGTCGTCGACGACAAAGAGACATATCACCAGAATTTTTTCGAATGAATCCTGCATGCACGCATCGCTTGATTCCTTGGATCACAAGAGACTTAAGTGTACTGCTCAGTGATGAAGAAAGCCATGTTGGTTTTGTTTTACAGATTATCTTGTCCCTCATTACCAAGGTTGAGCTGAGTTCTGAAGAGTTTTACCATCAGCTGCGACCCTTTCTGTTTGAGAAAACAGAACATTTCATTCATGAGTTCATTAGCTTTGCTCGTTCACCATTTGATTTGAATACGTATGACCAGCATGCACAGTACAGTTGGTATCATGAATCACAAACTGACCCAGTGAGAGACACTCCCACAGTATTTCACAGCAGTACCACAGATTGGCAATCTCCGTTACCTGGTCCTTCCGAAGTATCTCACTTAGAACTCTCACAAGTGGAATGGAACGCAGATTCTCCATTGCGTACCAATGACACAAGCTGGTCTCCGACGTCATCTCCAGGGACCACGCCCCTTAATGCGCCGACCGTGACCATTTCGTCGTCAAGTTCGCATTCGATGTCGACAGCGCATATTCGAACAGAGGTTAATGTGAACAATGCCTCGATTTCCACAGCTACATCTTACCCGAGAAATTCACCCTCCAAATTGGGAACAAGGAATGTGGATGATGTCAGGAAATCAAGAAGAACGCGAAGCCACCGACATCATGAACATTCTCACAAATATAGGCGAAAGCAAAAGAAGAGGGTTGAATCGGAACATCGCTCAAAAATACACGCGCACAGCTCTGATAGAGACTTAAACATGCCAGGGCCAAGTAACCCTGTGTCAGTTGATTCGTCTGTTTCCAGCAAATCAATTGAAATTATTTGGCTTAGTGACAGCAGCATTTCGAGGAATTCTTGCGACATTTTTTCTGGACGCAGTGCTTCTACAGTCAAGCGATTAAGCATACGATCACGTTCGAGATCTAAGAACAGAGACTCGCGAAAATCTAGACCTCGCTCCCTCTCCAGCTCGAGCGGAAATTGGAATATAAGCCATCAATCACGGTCTATTTCGGGATATCTGAAATCAAACTCGCGAAAACATTACCCTTCTGATTCTGAGAAAAGCAGAGGAGATAGACAATCACGTTACCGGTCAAAGAGTAAACGTGAGAAGTCGTCTTCTCACTCGAAACCTTGCTATAAGGACTTAAAAAGAAAGGAGGAAAGTAGAATAAATAGGTCGCGGTCACGTTCTTCATCACGCTCACACTCTCTATCGAAAAGAAAGCTACATTCAAGGAATTCTTCAAAATACTTTCGTAGCAAGAGGTATCGGACTCGATCGCCGGAACGAAATCCTTCGTCATCGTCTAGATTGTCAGAGTCGCGTTTGTCCGAAAGCCGCCCCCGAGTTCACGCTGTAGATCATTTCACAGGTTCAGGGTCTTCTACATCATCGTTACCAAAACAAGCCGCAAGGTCTCCAAACTCACGTCATAAGTTGTGTTGTCGTTCCTCTTCTCGTGACAAAGAGTCTGAACTCAAAGGGGAAATTCCTTGTGGTACTGAAGATATCAAACGAGAAATTGAAGATTTGGAACACCGAATTGCTGTTGATAAGAAGCGGCTGCTGCAGCTTCTAATCAAACAAGAGAAGAGTAAAGGAGGAGAATCAACGGAAGATGTTTGCGGAGAATAAGATGACTGTTAGTAATAAAATTGCCAAAATTTATTGGGTCTGAGCAGCATTCGCGCATCAAACTATGTGAAATGAAAAAACACAAGCAATTGCATAATGGAAGTGCCTTTTGGTATTGAAACATTTCAGAAACATCAATGAGAAATGCATTCAGGAAAAAAAGCCTGGTACCAGAGCATTTGAATGACTTTGCAATGCGAAATTTCTTTCGAGACCAAGACACCTCACGGAACTAATGATCATTCATGCCTTCCATCTACACTTTGGTTTTAGTTATATTTTATTTAACCAAATTTTAGTAAAATGCAGAAACAAAGATCCTCTTACACGGGAAGAAGAAAGCTTCTGCTCTAGAAATTTTTCATTGAAGCAGATAAAAATAAACAATATTGCTTATATGTTGTTAATTTTTTTATCATTCTAATAAAAAATGTCCATCTACATGCGTAACAGACAACTTGGTGTACGAGACGGGACATTCAACCAGCCGATTCTAAACACTCAGACTGATGCTTCCTAAACAGCCACTCGCGAAGGTTTATCTGATCATACGGGATCAATGTTAGTCTTTGTTTCTGCGCATGAGCTGAAACGCATGAACAAAAGTAGACGTTAATTTTGcgcccaattaatttatggataatacgaactttaagattctaggaaaaggacgagaacgagtacgatatttgactgtccgtttttagcgaaaatacttataaaatttataacccgga

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80Z37	E3 ubiquitin-protein ligase Topors OS=Mus musculus OX=10090 GN=Topors PE=1 SV=1
Q9NS56	E3 ubiquitin-protein ligase Topors OS=Homo sapiens OX=9606 GN=TOPORS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003724 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46077 all species →	E3 UBIQUITIN-PROTEIN LIGASE TOPORS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10631	TOPORS; E3 ubiquitin-protein ligase Topors	EC:2.3.2.27	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.