Gene detail

Detailed information of amic_s0050.g60.t1 in Acropora microphthalma

Genomic Location: sc0000050_pilon:579248...581359
NR annotation: XP_015755666.1, PREDICTED: uncharacterized protein LOC107335194 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

amic_s0050.g60.t1

CTTAAAGCCATTTTCAATGCGCTTTTCAAATGCATTCAAAGTAGCGATGAAAAGCTCTCGGTCGGCAGCTGGTACGGTGGACGGATCGCTGTATAATTGCCATTTCATGCACACATTAAGTCCGAACACTCACGCTTGTTAGGTGCTTCCAAAGCTTTTGTTGGCTTTAAATCCCGCTGCCCTTTATTCACAAAGTTAATCATCACGATCGAAACGACTGGAAACTGAATATATACTTTCGCTCTAGCTGCCTCGGTCACGCGGAAACGTCGCTCAGGGAAATTTCGTTAATATAGTTGCTAGTCTGCACGCGATAAATCACTCATCGAACCAGGAGCTAGGAACAATGGGGGACGAGATGCTGAGCGTGTTCTACAGCGGTGACATTTTCCCCAGCCATACAAAGATGATAAGCGCCCGGGAAGTAGCAAGCCTCAAAGTCACTTTCGATGAAAAGAGCGAATTTCGACTCTTCAGGGACTACTTTGGCTTAATTCGACTCGTTCAAAACGCGTCGGATTTGGAAAGAGCGGAACCCGGATTTGATAGTTTGTATGATTTCACTTACACCAAAAGATCCCGGGTTGACAGCATGGGATCAGATCATTCTCTAACAAGTTCAAGCTCTGGTGGAAACTCCGAAATTGAACTTTGCATAGAGGCGTCTAAGACGCCTCCGTCGTCGCTAGCGCCCGGTGCGCCAACTCGAGTTTCGAAGCGGAACATTGAAAACAGCAGCGATGTAGCCAATCGCAACCGCAAGAATCGGGAAAGCAAGAAAAATCGGAACGCGAACGTGTGCGTGTTTTGTAGGAATAATGGCGAGAGTAAAAAAGTCTATTCAAGCCATGTTTTGAAAGATGCTGAAGGCAACACAACATGTCCTATTCTGCGCGCATATACCTGCCCTCTTTGCAAAGCGTCCGGGAATGAATCTCATACAATCAAGTACTGTCCCAAGAACAAGGCCGCATCAAAACAACAGCAACAACAAAACGCAGCAGCAGTTGCTGCAGTTGGCCAAGTTTAACCGAACTATTAACACTGAAAGATCACAAATACACGTGGGTCCATTTTGAATCGCTGAGCTATGTGCTCAAGCTACATGCACCTGCAGGAGGAAGTTAACTGAAACGGTAAAATATTTCTCGCACAGTTTCTCAAAAGGCTGATGCCCTGAAAAAACAGGCCTCTAAACTATATGGATAAATAATAGCGGGATATTTAACCAGTATTTGGATACACCGTTTAAGTTTTTATAATTTGATGATACAAACCTTAATATTTTGTGCTTGTTAGTCATGTCCACAAAATAAAATAAAATAAAATAACTGTAGATTTTTAGATATTTGTAAAATGTCATGACTCTTTATGGCACATAGCTCAAATGCGACGGTAACTTTCATTGGGCTCTGCAATATTTGCCTTATTTTGCAAGTTCGCTATTTTGTCTGATTTACCCAGTAAAGAATTTTTGGGCTCAACGCCTCCTTTTCAAGCTATGATAAAATTTCAAAAGAATTCGGAATATCAGTAATTATTGTAAACCGAAATTTGCTCATACGATATTCGGTTTTTCAGAATTCATAACTTATACAAAATTAATTTGTGTACAGGACTGCGGAGAAAAATATGTTAACTTTTGGTGTTGAAATCATATAACCAGTGAATAAAAATTTGAAGCACAAGTGAAATTTCTAGTTTTTAAGTCAAAACAATAAACTATCGACAGGGTTGGATTTTCTTAATGGAAACGAATTTCTTTTTGAACCTTAAAAGGTTAGCAACAACTAGGGTAATATTTAATAGAAGGTCGAGAGGAAAACTTTATTGAAGTTGTAATTCAGGATTAGATAAATTTCAGAATAGTCATCGTGTAAAAATTGCACATATGCAAGCGAAGGAGGGTTGTGTTTCTATCAGGTGTTTGGCTTGCGATGCAGTGCGACTTTAATGGTTTTCCTAGAAATGATTTTGTAGAGTAAATTCTGGAGTTTAGTAAACAATTTCGCCACTTCTTAAACGGCCATTTTAAAGAACTGAAATTGACAAAGTTATGTACTTATAAAGAATACACCATTATTATTCATGCAATAAAAATTGAATTGTTTC

Protein

Uniprot

Uniprot term	Description
E7FDB3	Nanos homolog 1 OS=Danio rerio OX=7955 GN=nanos1 PE=3 SV=1
P60322	Nanos homolog 2 OS=Mus musculus OX=10090 GN=Nanos2 PE=1 SV=2
Q80WY3	Nanos homolog 1 OS=Mus musculus OX=10090 GN=Nanos1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05741	zf-nanos	Nanos RNA binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024161	Domain	Zinc finger, nanos-type	Interproscan
IPR008705	Family	Nanos/Xcat2	Interproscan
IPR038129	Homologous_superfamily	Nanos domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12887	NANOS PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0048471	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0048477	Biological Process	oogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18741	NANOS1, NOS1; protein nanos 1	-	Messenger RNA biogenesis	ko03019	deepkoala