Gene detail

Detailed information of amic_s0050.g70.t2 in Acropora microphthalma

Genomic Location: sc0000050_pilon:654678...666545
NR annotation: XP_029184725.2, dystrophin-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0050.g70.t2

ATGCCAGGAATAACAAGTTTGCTACCAGACGGCTGGGAACGCTCAGAAACAACAAACGGAATTCCCTACTACATAAACCATGAGACAGAAACCACTCAGTGGGATCATCCAGAGATGATCAGTTTGATGGAGGAAATTGAGGGTTTGAGTAACATCAAGTATGCTGCATACCGCACTGCCATGAAGTTAAGGACCATCCAAAAGAAAACACAATTGTATTTGGTTGATCTGCGTGTTGCAAAGGCATCTCTTGTTGAAGAAGGGATCAAGGATGGCTACATTGAGGGTAACCTTTCTACAGCAGAAGTGCACAAAATAATAACAGCTATCTTTATCAACCAAACTGGAGATCGTAACTCACAGCTCATTGATGTGTCCCTGGCAAGTGAACTGGTCCTTAACTGGATCCTCAACGTCTATGATCCAGGACGAATGGGATTTGTTCCAATTCTTTCACTCAAAGTTGGTCTTGCTGTGATGAGCTCTGAAAAGGTGCAAGAAAAATACAGATATCTGTATTCACAGTTTTCTAATAATCATGGATTTTTGGACAGCAAAAGGCTCAAGCTTTTTCTCCAAGAGATGTTGCAGATTCCAAAACATATTTATGAGAGTGCATCTTTCAGTGGATCCAGTGTGGAGCCTGCTGTTCGAAACTGCCTTGAAGGGGTTTCAATTCCAGAGAGAGTTTCATTTGAGGAGTTTATAGAATGGATGATTGCTGAACCTCAAACTATTGTATGGCTTCCCACACTTCACCGATTAGCAGTTTCAGAAACTGTTAAGCATGAGGCAAAGTGTAATGTATGCAAGATGTATCCAATTGTTGGCTTCAGATATCGCTGTTTGAGATGCTTCAACTTTGATCTTTGTCAGGGTTGTTTCTGGTCTGGTCGTGTTAGTAAACAGCACAAGATAGGTCATCCTACTCAGGAGTATTGCCTGGTGTCAACTCAAAAAGAAGACATCAAAGATTTTGCCAAAGTAATGCGCAACAAAGTGAGCAAAAAGAAGAAGAAGAAAACTCCAGAACATCCATCCAAAGGAAGGTTTATTCCAATTGACATGGAAGATGCTGTTCCATCTGAGGGAGAATATGAAGATTCTGTTGATGTGGGTTCTGCAGTAAAGGCATTTCCAGGAACACATGACAAGTTGGAGAGTTATGCAGCAAGACTAGCAAATCATGAAGTAAAAGAAGAGGAACAAGTAACGAGAGAAGATCCTGCCATGACAAGACCTGCAATGGGTGATGAACACCATCCAGTTCAACAATATGCCAAGCGTTTGACCAGAGAACCAGATGTGATGGGCGGCTCTCCTTCTCCCACTGACATGATGAAAGACCTAGCAGTGAGTAATCAAGAGAAGCAAGACCTTGAGCACCTTATCACAACCTTGGAGAAAGATAATAGAGCGTTACAGAGCCAGATCAACAGCATTCATCAACTGCAGCAACATAGTCAAACGGAACAAAGTATCACCCCGCTTGGGGACCTTACTAAAGAGGCCCATTTACGACGTCAGAGGGAACGACTGGAAGCACGCGAAGAGGTCCTTGAGGAGCATAATTACCAGCTGCAAGTTCAGGTCCATCGCCTTAGGACCCTACTGCAACAGGACGACCTGACCCTTAGTGGTCTTATTGGGGAAGAAAAGAAAATGGCTGCTGTTTTTGCACTAAATCGTTTGGGAAAGGGTGATCCTTCAGTTCCACCTTCCTTGAAACCATTTGTTCAGCCCACTTCGACGTTATCAGTTGATGTAACTAAAAACACCCCAATAAGACCAAGTGAGATAAGGACAACCTTTGAAGTTCCCAAAACAGCTTTCTCGTCCGTAACCTCTCAATCTCTTCAGCAAAAGGAAAGGTCTTCACTCTCGAATACCTTTGCAACTCCCGCATCGTCAACACCAGCCTACCTGCCGAAACACTCATTATCACCTGGTATCTCTCCCTCTGGGATGAAAACTGTTCCACAGAAAAGCACGGGTGAATTCTGGGGAGCCCTGCCTACTTCACAAGCGCCCCCTTTGGATTGGCCCTTTGTTTCTAGTACGGCTACCGAGTTGGGACTGGTGGACAGACCAGATACTTCGTATGAAGGCTTGCAGCTGAGCAGTATAGTTGACAGAATCACAGACTCCTTTCCGCTTGCAGTCAACTCTGACGTGGCGATGGACGTTCACAACGATCTTTTCCTATCCGCAAGTCTCGTTGGTGAAGCAATGCTGTCGATGGTGAGCACAGTGGCCAGAAACACAGATGGCGCAACAAACAGTGGTGTTAGTCCTGCAAAAACTTCCAACAGAAATTTCAAGACGCCCGCTTCCTTTAAACAACTCTGA

Transcript

amic_s0050.g70.t2

TGAAAAATTAATCCATGTTTTGGAGCGTTGTAAACAAACTGAGAGATATCTACCTCATCATGTAATCGATTTCAAATAAACAGACAATGCCAGGAATAACAAGTTTGCTACCAGACGGCTGGGAACGCTCAGAAACAACAAACGGAATTCCCTACTACATAAACCATGAGACAGAAACCACTCAGTGGGATCATCCAGAGATGATCAGTTTGATGGAGGAAATTGAGGGTTTGAGTAACATCAAGTATGCTGCATACCGCACTGCCATGAAGTTAAGGACCATCCAAAAGAAAACACAATTGTATTTGGTTGATCTGCGTGTTGCAAAGGCATCTCTTGTTGAAGAAGGGATCAAGGATGGCTACATTGAGGGTAACCTTTCTACAGCAGAAGTGCACAAAATAATAACAGCTATCTTTATCAACCAAACTGGAGATCGTAACTCACAGCTCATTGATGTGTCCCTGGCAAGTGAACTGGTCCTTAACTGGATCCTCAACGTCTATGATCCAGGACGAATGGGATTTGTTCCAATTCTTTCACTCAAAGTTGGTCTTGCTGTGATGAGCTCTGAAAAGGTGCAAGAAAAATACAGATATCTGTATTCACAGTTTTCTAATAATCATGGATTTTTGGACAGCAAAAGGCTCAAGCTTTTTCTCCAAGAGATGTTGCAGATTCCAAAACATATTTATGAGAGTGCATCTTTCAGTGGATCCAGTGTGGAGCCTGCTGTTCGAAACTGCCTTGAAGGGGTTTCAATTCCAGAGAGAGTTTCATTTGAGGAGTTTATAGAATGGATGATTGCTGAACCTCAAACTATTGTATGGCTTCCCACACTTCACCGATTAGCAGTTTCAGAAACTGTTAAGCATGAGGCAAAGTGTAATGTATGCAAGATGTATCCAATTGTTGGCTTCAGATATCGCTGTTTGAGATGCTTCAACTTTGATCTTTGTCAGGGTTGTTTCTGGTCTGGTCGTGTTAGTAAACAGCACAAGATAGGTCATCCTACTCAGGAGTATTGCCTGGTGTCAACTCAAAAAGAAGACATCAAAGATTTTGCCAAAGTAATGCGCAACAAAGTGAGCAAAAAGAAGAAGAAGAAAACTCCAGAACATCCATCCAAAGGAAGGTTTATTCCAATTGACATGGAAGATGCTGTTCCATCTGAGGGAGAATATGAAGATTCTGTTGATGTGGGTTCTGCAGTAAAGGCATTTCCAGGAACACATGACAAGTTGGAGAGTTATGCAGCAAGACTAGCAAATCATGAAGTAAAAGAAGAGGAACAAGTAACGAGAGAAGATCCTGCCATGACAAGACCTGCAATGGGTGATGAACACCATCCAGTTCAACAATATGCCAAGCGTTTGACCAGAGAACCAGATGTGATGGGCGGCTCTCCTTCTCCCACTGACATGATGAAAGACCTAGCAGTGAGTAATCAAGAGAAGCAAGACCTTGAGCACCTTATCACAACCTTGGAGAAAGATAATAGAGCGTTACAGAGCCAGATCAACAGCATTCATCAACTGCAGCAACATAGTCAAACGGAACAAAGTATCACCCCGCTTGGGGACCTTACTAAAGAGGCCCATTTACGACGTCAGAGGGAACGACTGGAAGCACGCGAAGAGGTCCTTGAGGAGCATAATTACCAGCTGCAAGTTCAGGTCCATCGCCTTAGGACCCTACTGCAACAGGACGACCTGACCCTTAGTGGTCTTATTGGGGAAGAAAAGAAAATGGCTGCTGTTTTTGCACTAAATCGTTTGGGAAAGGGTGATCCTTCAGTTCCACCTTCCTTGAAACCATTTGTTCAGCCCACTTCGACGTTATCAGTTGATGTAACTAAAAACACCCCAATAAGACCAAGTGAGATAAGGACAACCTTTGAAGTTCCCAAAACAGCTTTCTCGTCCGTAACCTCTCAATCTCTTCAGCAAAAGGAAAGGTCTTCACTCTCGAATACCTTTGCAACTCCCGCATCGTCAACACCAGCCTACCTGCCGAAACACTCATTATCACCTGGTATCTCTCCCTCTGGGATGAAAACTGTTCCACAGAAAAGCACGGGTGAATTCTGGGGAGCCCTGCCTACTTCACAAGCGCCCCCTTTGGATTGGCCCTTTGTTTCTAGTACGGCTACCGAGTTGGGACTGGTGGACAGACCAGATACTTCGTATGAAGGCTTGCAGCTGAGCAGTATAGTTGACAGAATCACAGACTCCTTTCCGCTTGCAGTCAACTCTGACGTGGCGATGGACGTTCACAACGATCTTTTCCTATCCGCAAGTCTCGTTGGTGAAGCAATGCTGTCGATGGTGAGCACAGTGGCCAGAAACACAGATGGCGCAACAAACAGTGGTGTTAGTCCTGCAAAAACTTCCAACAGAAATTTCAAGACGCCCGCTTCCTTTAAACAACTCTGAAGGATATCAGTAAGAACCCATACACAGAAAACGGGTTTCGTGGCGCGGTGATATAAGTCGGTCATCTCAGCTGTAGTTCAGACTTCCGCTAGTGCACAAGATAACACAAATCACGGTTGCAAAAAATTTTTGCGGAAAATAAGAATATACCCAATTTGAACTCAGATCAGTGTTCTAGACTAAGAACAGAACCAAACTTCAGGGCAACGCATCGTGTTCATAGCAATCAAAGCTGTCCTGTGAGTAGAACTTAAAGAGAAGCAGGAGAATCGTTAGCGCAACACTTAACGTGCTAGTATGGGTTAGAAAGTATAAGGAATTGGAATTCGTTACTTTGTGGTGTGATGATGCAAACGTATGTGGTAGCCTCTGTACCAGGCACCAATTAAGCTGGTAGGGATGGACCAAAGTTTCGACGGTAGAAAAGAGAATGGAAAACACATTCTGCATGTTGTTGCCATGCAGCATTATAAGCAACTGTGCTTTAGGTGAATTGTGAAAAAGAAGGACAATAACTTTGTTGTGCAAATTATGGAATTTTGAAATTGATGGAATGAAGATATCCTTCTGGAATGATGAATATATTACCTTTTGTAGTGTAGGACATTCAATAAGGATTTCTGAAAGATTGACGTTGAAAGCCGTCAACACCAGTAGCATTccaggggtcggttgctttaagcatggtttgcactaaccatcgtttaagaagtctccaaaacctatacgtttctatggtagttaaactctggtcagcgctaaccatgcttcgagcaattctgcccaggggcccgtttctagaaagtcccgaaaacttttcgggcccgaaaaaccattcgtaaaactacgacttgcttattctgtataaagctggtcttttcatgttgtaaagggaataaaaatataaataactgcatagtttcgtacctcgagacgctttcgtttcgaggacacacagagaattatgtcatccgaaatacgcccgaaaagtttcgggactttcgagaaacaggcaccaggattgttaaTGAGATGAAGTCATGTCCGTTTACAATAAACTTTTAATGGCATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G3V7L1	Utrophin OS=Rattus norvegicus OX=10116 GN=Utrn PE=1 SV=3
P11533	Dystrophin OS=Gallus gallus OX=9031 GN=DMD PE=2 SV=1
P11530	Dystrophin OS=Rattus norvegicus OX=10116 GN=Dmd PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003291 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397 all species →	WW	WW domain	Domain	Interproscan
PF09069 all species →	EF-hand_3	EF-hand	Domain	Interproscan
PF09068 all species →	EF-hand_2	EF hand	Domain	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202 all species →	Domain	WW domain	Interproscan
IPR015154 all species →	Domain	EF-hand domain, type 2	Interproscan
IPR015153 all species →	Domain	EF-hand domain, type 1	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR050774 all species →	Family	KCMF1 and Dystrophin	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12268 all species →	E3 UBIQUITIN-PROTEIN LIGASE KCMF1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0099536 all species →	Biological Process	synaptic signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0050.g70.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.