Gene detail

Detailed information of amic_s0050.g83.t1 in Acropora microphthalma

Genomic Location: sc0000050_pilon:782818...793110
NR annotation: XP_029184717.1, sorting nexin-7-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0050.g83.t1

CGATAGTGTTGATGTGGCTTTCAATATGGCGGACGACATTGATGCATTCAATCCCTTTGACGACGAAAACACAGATGCTGCTGATGAGCAAAATACAGCTAGAGCTGTCTTACCAGATAGTACTCAGGAAGAAGCAGACAAGTCCATTGATTTTGGCGAATCAGAAATTGAGCAAAGCACAGTATTCCTGGAATCTTTTAGGATAGGTGGTTATGATGAAATGGCTCAAGTAAAGGATTTGCATGTCACTGTTGATGATCCTGAAAAACACATTGGGAGCTATGTCAGTTATAATGTCACTACCAAGACTACAAGAGGACAATTTGATCATCCAGAGTATACTGTTCGAAGAAGATACCAGGATTTCCTTTGGCTTAGACAAAGACTTGAGGAAAGCTACCCCACTCATATTGTACCTCCACTACCAGAGAAAAAGTCATTTTCCAAGCGTTTTGATAGGTTTAGCACAGAATTCCTCAAGTCGCGTCAAATTGCCCTCAACAAGTTTGTTAGTAGGATAGCTGACCACCCTGTGATGTCTTTTAATGACAATTTCCACGTGTTTCTCACTGCCAAAACTTGGGAGCTTACATCAGTTAAGAAGCAAAGTCCAGGATTAATGAGCAGAATGAGTGATTCTATGAGGAACATGGCATCATCATGGATGCTGAAAAACAGGGAGCCTGAATTTCAGGAAATGGCTGAATTCACTAAAACATTCAGAGAAAAGATGGTGGCATTAGAAAGTGTCTCTGACAAAATAGCAAAGGATAGATTTGATCTTCTTGAAATTTATAAAGAGTACATACCAATCTTCAACTTATGGGCAGATGCAGAGACAAAGCTGGTGGACCCTTTACATGCAATGGCCAATGCTTTTGACAGTAATAGCTCATCTCTCAAATCATTGTTGAAGGCACAGGATCCAAGATTTATGGAACCGTTACATGAATACGTGCTATATACAGATGCTATAAAGAGTACTCTAAAACATAGAGACACAATTCAAATGGAATATGAAGTAACTTTagaagaattatcaagaaaaaagacagaaaaagaagagTTGGAGAAAGGAACTGGTGGTGGTCGTTGGTTTGGTAAGGAGACGGATCAGTCAAAGCAAGATAAACTAGAGAGAGTCAATACGAATATAGAAGAGTTATCAAAACTTTCGGAATCAGGAAATGATCGATTGGAGTGCGCCAATGTTGATCTAAAAGCAGACATCGAACGATGGCACAAAAACAAGAGAACAGACTTCAGAGATCTTTTGACTGAGTACTCCGAGAGACACGTCAATTATTATGAAGAGTGTCTCACAGCTTGGCAGGAGGCCCTAAATATTGTTTCAGGAAATCCACTAGATCGCGGCGAAGACTTGGAGGACGAAGCTTAGGTATTGCTGATAACATTGTGGAGGAATCACCCTTTAATTGCGCATTGAATTGTTCCAATTGACGGTGGATCATGAAGAAACCACCTACCTGGTATCTGAAACTTGTATCCCCTCTCCTGATTCTGATTAGTTTGCTCTATTTTTTTTTTAATCGATTTCATAGAGTTTTGGATCGTTATTCGTCTACGAATATGTTACATATAAAGCTTTTACTATAAGCAAGAGTGAAAGAGTGATGATGAAAAATTGTGTCATGTATTTCTCGTGCTGATCTTTGGGCGCATGTGCGTGCGTATCGTTTGCGCATGCCTTTGAATCGTACGTGTAATTCGTCAGTGTTGCTTACGCTCTGCCggacctggggcccgtttctcgaaaatcccgaaactttcgggcgcatttcgggtggcataattctctctgtgtcatcaaaacaaaggcctctcgaggcacgaaactttgcagttattttaatttttatttcatttgcaacatctgaaaagaccagctctacagaataagcgggtctgagttttacgaatggcttttcgagaattttgagaaacgggcccctaactcaactctaaaaCCTGGATTAAAATTATGCCGGTGATTAAGTTTCCCTGCGATGCAGGTAATTGCTAGTGCTGAtagagcagttttcaaatgagggtcgaaagtaactacgttattgcgattgctacgcggagtgattcccgcgccagtttttcaaccaatgaaaaccaaaacgaaagccagtcgcaccttgtccacgcgatttttccagcgctttgagaaagttacatgtaattgcttggaattctgattggttcattgcactgtttgctcgtgttaagattggttggtttttcgacagtcatttgaaaaccgctataTATCACATGTTGTGATTTCGTCGACTTATACTAGAATACAAAGTCAAATACAAAACCCATAAAGAGGTAATGGTTCAAGAGGGGAGAAGCAGGAAAGGAATTTAGATATATCATTTCAACTTTCAGTTCACAGATATCGCGAATGTTAGGCAGATAAAAGAAACGAAATCTTATTTTGTAACGATAAAAATACGAATTTTTTAACGTACTCAACTTAAATTTATTTTGGAATTCTACCAGACAACAAGAAAGGGATACATGTAACACAATGAAGTTACGATTGTCGCATTACTTTTATTTTTGTTTGTTTCAACTTGCAAAACTTGAGACTGTGCTCTCGTCATTCTACCTTTTAATTTCCAAGAGGCCCACGTTCCCGTCAATAGCGGGCGTTAGGACACGCGCGAAGACTGATCCATGGGGACGTTGATAGCTTGAAATAACTTATCCAGTTTATAAGTGAACTCTTTGGTAAATGGCCTAATAAAGTTAAGGATTAGATGTTAATTTTGGCACGAAAGATTTCATGCCGCCTTTAACTAGCGTTTTTCCGCTGGACCATGTCCTAACGCATGACAGGGTAGAACAATAATTACAAGCAAATTAGGAGATGAGTGATTTGTTGAGGTCGTAAATTGATGCTCGGAAAGAATTTTTCTACGGAAATGGTTACGGTTTAAATTCTATTATTTTATTTGTCCGACTTTATGAAGGATGCTTTTTTTGTGTCTGTAGGAAAAGTAGGCAGAAAAGAAAATAACAAATGACGCTGATGAAATGCTTAGCCTGACTTTTATGCATGCGAATATCTAATTATTAGATCGATATTGGTTTTATTTTACAAAAGATAATTATACATGCAAATCTAATCTGTTCAGTCAAGTGATAACTCAACTATCAAGCACACTATTTTGCCAAAGATTCTTGTTACTTCTGATCATACAACCAACTGCGACATGTGCCACAGGTCATAAATTTCGTCAAGGGAACGGTTGCCAATCGAGTTAATGCAATCAAGAAGTCATTAATCCTGTTCACACATCCGTTTGGCGTGATCCTCTTGTTATATTTGTTTAGATAAAAAAAAAAAAACATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CE50	Sorting nexin-30 OS=Mus musculus OX=10090 GN=Snx30 PE=1 SV=1
Q4V7P7	Sorting nexin-30 OS=Xenopus laevis OX=8355 GN=snx30 PE=2 SV=1
Q28E02	Sorting nexin-30 OS=Xenopus tropicalis OX=8364 GN=snx30 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007766 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787 all species →	PX	PX domain	Domain	Interproscan
PF09325 all species →	Vps5	Vps5 C terminal like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001683 all species →	Domain	Phox homology	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR015404 all species →	Domain	Sorting nexin/Vps5-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45949 all species →	SORTING NEXIN-4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0000407 all species →	Cellular Component	phagophore assembly site	Interproscan
GO:0000422 all species →	Biological Process	autophagy of mitochondrion	Interproscan
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0034727 all species →	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:0061709 all species →	Biological Process	reticulophagy	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17921	SNX7_30; sorting nexin-7/30	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.