Gene detail

Detailed information of amic_s0050.g91.t1 in Acropora microphthalma

Genomic Location: sc0000050_pilon:857668...865821
NR annotation: XP_015755700.1, PREDICTED: UDP-xylose and UDP-N-acetylglucosamine transporter-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0050.g91.t1

GCGCTAGTTGAGCAGCTTTTGTGTTTGCTGTCCCTCCTCCTTTTTTTTTTTGACACAAATGCATCCCGCTATTCCCATTTTTCTGGTCTTTGCCGCCTGTTGTTCAAATGTAGTTCTTTTGGAGTTGATTGTAAGGCAGGATCCATCGTGTGTGAACAGTGTCACTTTTTTTCAGTTTCTATTTATTGCCACAGAAGGATTCATATTCACAGCAAACTTTGGGCTAAAAAAGCCGGACATCCCTATAAAGAATTATGTGATGATGGTGTTGTTTTTCTTCTCCACCAGTGTGATTAATAATTATGCACTGAACTTTAATGTGCCAATGCCTTTACACATGATCTTCAGATCAGGATCATTAGTGGCAAACTTAGTTTTAGGAATGATTATATTAAAAAGAAGGTATGAGTTATCAAAGTATCTATCAGTCTTTATGATTACAGCTGGGATATGCTTGTGTACATTAGCTTCAGCTAAAAAAATGGAGTTTAAATCACCAACTGGAGATCCTTTTACAGATTACAAATGGTTGAGTGTAGGAGTTGTTCTTCTGGTGCTTGCATTATTGCTCTCTGCAAGAACAGGAATCTATCAGGAGCAAATGTATGCAGAATATGGAAAGCATCCCAGAGAGGCATTGTTTTATGCACATGCATTACCCCTGCCTGGATTCATTCTGTTATCCAAAGACATTTATAGTCATATATTTGCTTTTAACTCATCTGCTCCATTAGTTTTGTTTGGTGTCACAGTACAAATTCCCAAGCTCTGGGCTTACCTCGCCGGGAATGTGGTCACACAATATGTCTGCATCCGAAGTGTGTATGTTCTGACTTCAGAGTGTACTTCTTTGACTGTCACACTTGTTATTACACTACGCAAATTCTTAAGCCTGATGTTTTCAATCTTCTACTTCAAAAACCCTTTTACTATTTATCATTGGATCGGTACTGTATTAGTGTTTGGAGGAACTATTGCTTTTACTGACATATTGAGCAAGATTCGAACAGCTCTGTTACCTAAAAAAGAGATAAAATTAGACTGATCAATGCTATTGTCCTTGCTATGTTTGCACTGGACAGATGAAGAAGAAATAGAGAAAACTGATGAAACTTCGTGACAAAGAATGTTATGATTCATATCATTTAAAGTTTCAAAGTGGTATTGATGATGCACACATTCGCATCTGGTGGATGCACATTCTCTTCAGGGGTAAACTCTTTGCCTTTGTGCACTGGATGGTGTCACTTAATTGGCCTGCAGCTGGAGTTCATGTCAGCTTCGTACTGCACAAGTATGCATCGATTTCATGGGGGAAATGGGGCAGGGAGAAAGAGAAAAGATTATTGATTTATTTGTAAACTTGCACCTGGTTAAAAATGCGCAGTGTGATCACCTTTATGTTTAGTTCTCACAGTTTTCCTTTTTTTTATACAAACATTGCATTGTACACATTATACTAAATCATTTTGAGGTTGATTTATCCCTTAAACGCTTTATTTTATTATGATTTTTGAACTAAAGTAGCAATCTTAAACCCACAATAATTATTTTATTGTTTTTAAGTGTCAACCTTCACTCGTGTCTCAGTTGTATAGTTTCCTGTTTACTTTCTCCTCGTAGTCGATGTACAAGCAGTATTACTATAGCTAAAATTGGATTCATTAATAGACAATTTGTATTGGTCCTTATAATATGAAATGCTAATTTGTAAAAATGACTGAAGAGAAACCAAAGATTATACTCTATCTATGTTCATTATCTATATACCAAAGATTATGATGTTGCAATATTAGTTATGCCACCTATTGGTTTGGTTTAACAACCACATCATCTGTATTTATCAATTGGTGCACTGATGACAGTAAAATCTTCCATGTTTTTGGTACCATTTCTATCCTGTCATCAAGGCTGGGTAGCATAGCAAGCTTAAGACAAAATAGTGGTTTAGTAGCAGCCATTTCAGCATTTACAGTAGTATTAAAGGTGATTTAAGTTATGACCACTGACACGGATGCTGTAATGCCAGTAATCTTATTTATAATGTGGTAAACTTACTGGCAAGTAGTTACGATCACATTGCCACAGTGACTGATCAAAATCTTTTTGAGTGGGGAATGATTACTTCTGTACAGCCTCGTGTCTGTAAATTTCTAATTCAACTAATGTTAGTTATTTATCATGATTGATTGATTGAGTGATCTTTATTTGATAAAGCAGGTTAAAGTTACTAAATTAATAGTTGCAGCGGCAGCTATCAGCTGATGTGGACCTGCTATATAAAACTATTTGAAATGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZW46	UDP-xylose and UDP-N-acetylglucosamine transporter OS=Danio rerio OX=7955 GN=slc35b4 PE=2 SV=1
Q95KB4	Nucleotide sugar transporter SLC35B4 OS=Macaca fascicularis OX=9541 GN=SLC35B4 PE=2 SV=1
Q8CIA5	Nucleotide sugar transporter SLC35B4 OS=Mus musculus OX=10090 GN=Slc35b4 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005870 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08449 all species →	UAA	UAA transporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013657 all species →	Family	SLC35B1-4/HUT1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10778 all species →	SOLUTE CARRIER FAMILY 35 MEMBER B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005462 all species →	Molecular Function	UDP-N-acetylglucosamine transmembrane transporter activity	Interproscan
GO:0005464 all species →	Molecular Function	UDP-xylose transmembrane transporter activity	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15278	SLC35B4, YEA4; solute carrier family 35 (UDP-xylose/UDP-N-acetylglucosamine transporter), member B4	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.