Gene detail

Detailed information of amic_s0052.g74.t1 in Acropora microphthalma

Genomic Location: sc0000052_pilon:1440271...1448758
NR annotation: XP_044165600.1, lysine-specific histone demethylase 1B-like isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0052.g74.t1

AATTCACAAATAGCCAGTCACTTGCAGGGCAGTGTGACACCAATCAAAGTGAACAAAGCTCCTTGCTCCTGTATCATTGATAGTGACGATATGCTATGTTGCATTTTTTTTTTATTCATACAGTTCAAGGTATTAAGTAATGATGGCAAATTTCTTTTTCTTTTTTCAAATTAATTTTCAAAAGTTCAAACAATCTAATTTCAATTTGCACTGTCAAACCTTTTGCTTTTTTTGAATAAAATAATTATTTCAAGTATATTCACAACAAAGCCAACATTTCAAGCATTAGCTAAGACTCAAGATGTCATATTTTGTAAGAAATTATTTGGTGATAGTTGTTGAAAGCCGAGATAGGATTGGTGGGCGTGTCTGGGATGACAAGAAAATGTTTGGTTGCTGTGTTGGTAGAGGGGCTCAGATTCTCAATGGATGTACAAACAATCCAATCTCTGTTTTGTGTGAACAGTCTGGTCTTACTATGCACCACATCGGTAGCAAATGTGACCTTCTCATGGAAGATGGCAAGTGTGTTGACAGCAGCATTGACAGTAAAGTTGAATTTCACTTTAATGCTCTACTTGATGCTATTGCTGATCAGAAGAGAGATTCCCCCAACAGTGACAAATCCTTGGAAGAGAAAGTTTGGGAGATGCACCAATTGTTCTTGGAGGAGACACAAACTTCATTCACGGAACTGGAAGACAAATTGCTTCAGTTTCATCTGGGAAACCTTGAGTTCAGCTGTGCTGCTCCTCTTAGTAAAGTATCATCCGTTTCCTGGGACCAAAATGAAGAATTTCCGCAGTTTTCGGGTGATCACACTCTTCTACACAATGGCTTTGGCATCTTACTTAGTAACCTCGCTCAGAACTTGGATATAAGGCTGCAATTTAAAGTGAAAGAAGTTGATTACTCTGGAGACAAAGTTGTTTTGACGAGTGCCGATGGGAGGATACTCTCTGCTGACAAGGTAATTGTTACTGTGCCTCTATTTGTCTTAAAATCTGACTGGTTAAGATTTACCCCTGATCTCCCTACAAGGAAACAGACTGCAATAAAGAATCTTGGAGCTGGACTCATAGAAAAGGTTGTTTTAAAGTTCAAGTACAATTTTTGGGAGAAAGTGGTAAAAGATGCAGACTTCTTCGGCCATGTCCCAGAGTCTCGTGAAGGGAGAGGTAGCTGTGGTCTTTTCTATGATCTGAGCGGAAAGAGGCATGGACAATGCAATAAGGCTGGTAGTGTCCTTATGACTGTTTTAACTGGAGAAGCGGCTGCGCATGCTCAGGAGATGACAGATAAAGCGGTGGTGGATATGTGCATGGCCATCTTGCAGAAACTTTTCCCTTTTAAGATTCCAGATCCACAAGGTTACTTGGTGACGCACTGGGGTAGAGATCCATACTCTGGAATGGCGTATTCTTATATTCCTGTTGGATCGACTGGAGAGGAATATGATCATCTAGCGTGTGATGTTGATAACAAAGTGTTTTTCGCTGGAGAGGCAACCAATCGCTACTTTCCGCAAACAGTCACCGGTGCTTACTTGAGTGGTATCAGAGAAGCTGCAAAGATTGTATCATTGACAGAAACAAGCATGACTTCATGAAGATTTTCTGAAGTTTGGACATCAGATAGTGAGTTGGATGAAACATACGACATGTGAAGCCTCCTTCAGAGCAAAAATGCCGTTGGATTTCAAGGTGGATCGCATCCTTGGCATAGGGATCGTGTGCAGTGACTTCTGAGTGATGAGTTAAATCAGCTGGTGATGAAAAGATGGCTGATAGTGTTTAATCCGCGAAAATTTCGTATTCCATTGAACGATACCCTTCAAATGTCAATTATTAATGCTATGGTCATTGCAACCCATCTTGACTATCTATTAAGATCTCGTGTATTGAACTGTTTTTATTCATTTTCCAGCCCTGGAGAATTAAGCAAGAAGTCACTGCCTTGGTTGCAACTGCATTCAAAAAAAGTGAAAACACCTCTCGCAATTTCTGTGTGGACCAGTCAACCTCGTTTCCAAGGAAACTGTAAAGTTGGAGAGAACTAATTTGATCTTTGCCAAGAAAGGTTTCCTTTTTTTTTACTTTACCTTAAAGCCAGACGTAGAACTGAATTACAGTTCTGAATATTTTTCACGGAGTTTCTATTAAGATTCCTTTTGAATGCTTTAGCGCTCTCTTATACAACAATTATTTATTAGAACAAGCAAATTCCTTTCAGAAATAATTGTACTGATTAAAGACCTTGCCGATTTACCTAATTTGTCAATGAAGATGATTTTTCTCAATTTCGTCAATTAATTACGCTTTCTTTCAGAGAATACTCTATGCGATAAATTACTATGAATTGTCTTCTAAGAATATATTTTGGATCATAGGCATTTGTTACCCAACAGAAAACGTTCTTTTATATATATATATATGCAGCAACGTTTTCTTTAAGTATAGCGGAGAAGAGATTTATGTAATACCTGAAATCTTGAGGTGGTGATTTTACGCCAGGCAGTGACCATGCATTTTGACACATTTGTTTGAAGAATCCATGCTAAAACATTACCCGATAATTAGACGGTCGTTTTCTCGGCTACACTCCTGGAATGGATTACTTACCATGAACCCACCGCCATTGCTTTAGCAATTAAATGTCAACGTGGTACCCAATGTTGCGATGAATGTCATTATTCGTTGTGTATGTCATTTGAAAATTCATTTTGCCTGGTGTAGACATCCACCAAAGATATTTAATAAGGGTTGAATTGAGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NB78	Lysine-specific histone demethylase 2 OS=Homo sapiens OX=9606 GN=KDM1B PE=1 SV=3
Q8CIG3	Lysine-specific histone demethylase 1B OS=Mus musculus OX=10090 GN=Kdm1b PE=1 SV=1
Q21988	Lysine-specific histone demethylase 1B homolog OS=Caenorhabditis elegans OX=6239 GN=amx-1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004919 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01593 all species →	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR050281 all species →	Family	Flavin monoamine oxidase and related enzymes	Interproscan
IPR002937 all species →	Domain	Amine oxidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10742 all species →	FLAVIN MONOAMINE OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0052.g74.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.