Gene detail

Detailed information of amic_s0054.g15.t1 in Acropora microphthalma

Genomic Location: sc0000054_pilon:215366...233698
NR annotation: XP_029203757.2, LOW QUALITY PROTEIN: echinoderm microtubule-associated protein-like 2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0054.g15.t1

ATGAGTTCAATGCCAAGGTTTGTCACCAAGATTATCGGTGGAAAATTGGTGACAGTGCCTGAGTACCGTGATTCAACTTCTGCGCAAACAACGGGTCACAGTGTGACCTATCCATGGGCCAAATATGATCCCGTGCGATCACAAAAGATAGGTAGCAGGACATACCCTGTCCTTCCACCAATATCAGATGGTCACTCTGAACGGTTGTCATCAGCAAATCTTAATCAAAGCGTTAGTGATGCCCTCATTAATGTCAGCAAACAGAAGCTTCTGCATGTCCAAAAGAAATTCTCCAGCCTCGATACAGACAACTCTGGCCGCATTACTTCGGAAGAACTAAGTCAAGTATTGCTCAACAATCAGATCTTTATTCTTGGGAAAACACTTACAACACTTGTGAAGAGATTTGAGGCTGAAGGAGGAGGTGTACTTCATGACGCACTGGCAAGATATCTCTTAGATTGCCACTACAAGGATAGGCAAAAGTTAAGTATATTTGGATTATCCAATCCCGTTCGCACAAACACTGGTCAGAGAGTTGACAAGGTAACAGATGCACAGCTCCTTTTGGAAGTTGAAAATCAACTGATGCAAAATGGAGGAAACTGGACTTTCAACGAACTTAAAGCTTCTTTTCAGAAATATTACGAGAAAGGAGCAAGAAATGGTCTCATTGATAACAAAGAGTTGAAGATGTTGTGTAAACGTCGCAATCTTCCCATCAGTCGATCGTTACTGGAGAAACTTGTTTCAAGATTTGATGTTGATGGAGATGGATGGGTGAACTTGAGGGAGTTTTCAAAATTCCTTGGAAAGGCTGTGTCAGTTGCTGCACTTGGAAATTCTTTAAGCTCCAATGATAGTCTTTCAAACAGAAATCAAAGTAGAACTGGTGCTTCCGGTAAACAACACAGCAGTGTGACTGTTAGTACTGAGACACAGACCAGCTCAGGTGACAAAGAAGAAAAATATGGCTACCGCGGGAGAGACTGTCGTAATAACTTGCATGTGTTAAGTTCAGGGGAGATCATCTACTTTATTGCTGCAGTGGTTGTGATTTATGACGAGGAACTTCATCATCAGCGACATTATACTCAGCACACTGATGACATCAAAAGTTTGTGTGTGCATCCTGATGGAGTAAGAATAGCGTCGGGTCAAGTGAAAGGCCACGGTGATGATGCAAAGCCTCATATCCGAGTATGGAATTCCAACTCCCTAGATACCATTTGTGTGATTGGTGTGGATTATTTTGAAGATGCTATCTTCGCTCTTGCTTTTTCGAACAAGAAAAGTCAGGGTTCGTATCTCGCATCTGTTGAAGACAATGAATACCATACAATAACTTTGTGGGACTGGACAAGAAAGAAAAAGCTTGCTTCGGCAAGGGGTAACATGGATCAGGTACTCGCCGTCAACTTTTCGCCTTTTGAAAGTCATCACTTTGTCACTTGTGGCAAACAACACGTCACATTCTGGGAATTGGATGACAACAAGTTGAAGCAGTCAAGGGGCAGACTGAGTAAAAATCATAGACCAAAGTACGTGTCCTGCATCGTTTTCTCGGTGAACTGTGACGTTCTCACAGGCGACACAGACGGCAGTATATGTGTGTGGCCGGAAGAATCAAACCAGATTTCCGAGGAGCTCGGAGTTAGGAACGCGCATTCCGACTCAGTCTACGCTCTTCTTGTCCTCCCAAATGATGTCGTGCTGTCTGGAGGAGGTGGTGAATCAATTGTAAGAGCCTGGTACAAAAGACCGAAACTAATACCAACCAACGTGGAATTAAAGCTCCCCAGAGAAGTCAGTGGAGTGCGTTCTTTGGCTTTGGGGACTGGAAACCAACTTTACATCGGTACAGTGGACAATCACATTTGGGTTGCATCACTGAATGTAGATCTGACATCTCCCCTCAAAGGAGCGGTGGCTAAGTCTGTTATACAGGGCCACTGTCAAGATTTGCGGGGTCTTGCAGCTCATCCCAGTTCTCCTACGTTTGTAACCGGTGGAAGCGATAAGGTCGTGCGGCTTTGGCATGCGGATCAACATCGTGTTGTTTGGACAAACAATAAGTTGGGCTCCGAAATTCAAGCTGCCGCATTTCACCCCTACAGCAGCTTGGTAGCTGTCGGCTTCAAGAAACGAGGCTGGGCTTTGTTGAACGCATCAACTGGGGAGCTAATCATCAAACTAACATCTGAGCCACCGGAGAAAATATCTGAAATCCAGTTTTCACCAGATGGAACTCATGTCGCCCTTGGCTGCCACGACAATGATGTGTACATTTATGAACTGCTGAGTGAAGGAAGGTCTGTCTCGCTCAAAGTTCGTTGCAAGGCTCATACAAGCTCTGTTAGTCACCTAGACTGGTCCAAGGATGGAGAAAACCTTCAAAGCACGTCTACAGATTACGAGTTGCTATTTTGGGACGCCTTGCAAGGTGAGCAGATCACAGCATCAGCGAGTCTACGCAATACCGAATGGGACACACACAATTGCGTTTTAGGTTACCCAGTCATTGGAATCTGGCCGGATGGAGCCGACGGTACAGATGTGAATTCTGTCGACCGATCCCACAATAAGCGGCTACTTGCTACAGGGGACGACTTTGGAAACGTCAACCTGTACAGATATCCCTGCGTCAGTGAAAAGGCGGAGCCTTGGATCATTAAAGGTCACAGTGCGCATGTCATGAACGTACGATTTCTTTCCGATGACACCCGATTGATCTCCGTAGGCGGTCGCGACGCAAGTACTTTACAATGGAAAATCGTAAGGATTGCGTAA

Transcript

amic_s0054.g15.t1

GTTATGGCGCTTACTTTACGGCTCGCATAGCTATTTTTGTTGCTTCGTGGAGGAGTGGGAGAGGAGAGCAAGTGGGAATCATATAATTCCTCTAACATGGCTGAGCGTCCCTGGGCAAGACAACATGAGCATTGTTCAAAATGGCGGACCTAGCAACATGTTTTGTAATCGAAGTGAGGTGCACCTTACGAGTTGAAAGTGAAATTTGTAAAGCGGCCACTTTTGGAGGATGAGTTCAATGCCAAGGTTTGTCACCAAGATTATCGGTGGAAAATTGGTGACAGTGCCTGAGTACCGTGATTCAACTTCTGCGCAAACAACGGGTCACAGTGTGACCTATCCATGGGCCAAATATGATCCCGTGCGATCACAAAAGATAGGTAGCAGGACATACCCTGTCCTTCCACCAATATCAGATGGTCACTCTGAACGGTTGTCATCAGCAAATCTTAATCAAAGCGTTAGTGATGCCCTCATTAATGTCAGCAAACAGAAGCTTCTGCATGTCCAAAAGAAATTCTCCAGCCTCGATACAGACAACTCTGGCCGCATTACTTCGGAAGAACTAAGTCAAGTATTGCTCAACAATCAGATCTTTATTCTTGGGAAAACACTTACAACACTTGTGAAGAGATTTGAGGCTGAAGGAGGAGGTGTACTTCATGACGCACTGGCAAGATATCTCTTAGATTGCCACTACAAGGATAGGCAAAAGTTAAGTATATTTGGATTATCCAATCCCGTTCGCACAAACACTGGTCAGAGAGTTGACAAGGTAACAGATGCACAGCTCCTTTTGGAAGTTGAAAATCAACTGATGCAAAATGGAGGAAACTGGACTTTCAACGAACTTAAAGCTTCTTTTCAGAAATATTACGAGAAAGGAGCAAGAAATGGTCTCATTGATAACAAAGAGTTGAAGATGTTGTGTAAACGTCGCAATCTTCCCATCAGTCGATCGTTACTGGAGAAACTTGTTTCAAGATTTGATGTTGATGGAGATGGATGGGTGAACTTGAGGGAGTTTTCAAAATTCCTTGGAAAGGCTGTGTCAGTTGCTGCACTTGGAAATTCTTTAAGCTCCAATGATAGTCTTTCAAACAGAAATCAAAGTAGAACTGGTGCTTCCGGTAAACAACACAGCAGTGTGACTGTTAGTACTGAGACACAGACCAGCTCAGGTGACAAAGAAGAAAAATATGGCTACCGCGGGAGAGACTGTCGTAATAACTTGCATGTGTTAAGTTCAGGGGAGATCATCTACTTTATTGCTGCAGTGGTTGTGATTTATGACGAGGAACTTCATCATCAGCGACATTATACTCAGCACACTGATGACATCAAAAGTTTGTGTGTGCATCCTGATGGAGTAAGAATAGCGTCGGGTCAAGTGAAAGGCCACGGTGATGATGCAAAGCCTCATATCCGAGTATGGAATTCCAACTCCCTAGATACCATTTGTGTGATTGGTGTGGATTATTTTGAAGATGCTATCTTCGCTCTTGCTTTTTCGAACAAGAAAAGTCAGGGTTCGTATCTCGCATCTGTTGAAGACAATGAATACCATACAATAACTTTGTGGGACTGGACAAGAAAGAAAAAGCTTGCTTCGGCAAGGGGTAACATGGATCAGGTACTCGCCGTCAACTTTTCGCCTTTTGAAAGTCATCACTTTGTCACTTGTGGCAAACAACACGTCACATTCTGGGAATTGGATGACAACAAGTTGAAGCAGTCAAGGGGCAGACTGAGTAAAAATCATAGACCAAAGTACGTGTCCTGCATCGTTTTCTCGGTGAACTGTGACGTTCTCACAGGCGACACAGACGGCAGTATATGTGTGTGGCCGGAAGAATCAAACCAGATTTCCGAGGAGCTCGGAGTTAGGAACGCGCATTCCGACTCAGTCTACGCTCTTCTTGTCCTCCCAAATGATGTCGTGCTGTCTGGAGGAGGTGGTGAATCAATTGTAAGAGCCTGGTACAAAAGACCGAAACTAATACCAACCAACGTGGAATTAAAGCTCCCCAGAGAAGTCAGTGGAGTGCGTTCTTTGGCTTTGGGGACTGGAAACCAACTTTACATCGGTACAGTGGACAATCACATTTGGGTTGCATCACTGAATGTAGATCTGACATCTCCCCTCAAAGGAGCGGTGGCTAAGTCTGTTATACAGGGCCACTGTCAAGATTTGCGGGGTCTTGCAGCTCATCCCAGTTCTCCTACGTTTGTAACCGGTGGAAGCGATAAGGTCGTGCGGCTTTGGCATGCGGATCAACATCGTGTTGTTTGGACAAACAATAAGTTGGGCTCCGAAATTCAAGCTGCCGCATTTCACCCCTACAGCAGCTTGGTAGCTGTCGGCTTCAAGAAACGAGGCTGGGCTTTGTTGAACGCATCAACTGGGGAGCTAATCATCAAACTAACATCTGAGCCACCGGAGAAAATATCTGAAATCCAGTTTTCACCAGATGGAACTCATGTCGCCCTTGGCTGCCACGACAATGATGTGTACATTTATGAACTGCTGAGTGAAGGAAGGTCTGTCTCGCTCAAAGTTCGTTGCAAGGCTCATACAAGCTCTGTTAGTCACCTAGACTGGTCCAAGGATGGAGAAAACCTTCAAAGCACGTCTACAGATTACGAGTTGCTATTTTGGGACGCCTTGCAAGGTGAGCAGATCACAGCATCAGCGAGTCTACGCAATACCGAATGGGACACACACAATTGCGTTTTAGGTTACCCAGTCATTGGAATCTGGCCGGATGGAGCCGACGGTACAGATGTGAATTCTGTCGACCGATCCCACAATAAGCGGCTACTTGCTACAGGGGACGACTTTGGAAACGTCAACCTGTACAGATATCCCTGCGTCAGTGAAAAGGCGGAGCCTTGGATCATTAAAGGTCACAGTGCGCATGTCATGAACGTACGATTTCTTTCCGATGACACCCGATTGATCTCCGTAGGCGGTCGCGACGCAAGTACTTTACAATGGAAAATCGTAAGGATTGCGTAACTGAGTGGTAGAAAAAAGGCTCGGACATTGCAGCAATATCCACGACAAGAGCTTATTATCCTTGATATCTCACGATGTATTTATTTTAAAGAGAGTACATTGCAAGTTCAAGATTAGAGAGTTAAAAGCAAGCACAATATAGCGCTTGCTATAGCTTCACTTGAAAAAAAAACAACTGCGCAATCACAAGTATTTCGCTATAATTGTACCTCTTCGTTAGGTTGCAGGTATTCAGTGTGAAGTATTCGATAACTCGCACGGCTTTGGAGAGAAAGTCGTAATATTTTACGGTTCTCGTCAAAACCGCAAGCAGCTTGTATGCATTACAGTCAGTTTTTTACCGACCTGTATTCAAATCCCAACGCAGTCTTAAATACTGCATAAAGATACTGCAAAACCAATGACATCCATGTAAAAATATCCTCTTTCTTATTCAACTCCCAAACAAAATGCAAGTTTCTTGGATTGTTTTTGTTCCTTTGATGAGACTGAGAAGCGCCCATTTTCTTTTAAGAGATTAAAAAAGTTTTTCCAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TNG5	Echinoderm microtubule-associated protein-like 2 OS=Mus musculus OX=10090 GN=Eml2 PE=1 SV=1
Q26613	77 kDa echinoderm microtubule-associated protein OS=Strongylocentrotus purpuratus OX=7668 GN=EMAP PE=2 SV=1
Q6P6T4	Echinoderm microtubule-associated protein-like 2 OS=Rattus norvegicus OX=10116 GN=Eml2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001388 (this species only) · gene tree & orthology
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20742 all species →	DUF5580_M	Family of unknown function (DUF5580) middle domain	Domain	Interproscan
PF03451 all species →	HELP	HELP motif	Repeat	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049246 all species →	Domain	DUF5580, middle domain	Interproscan
IPR050630 all species →	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan
IPR005108 all species →	Conserved_site	HELP motif	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011044 all species →	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720 all species →	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18595	EML1_2; echinoderm microtubule-associated protein-like 1/2	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →