Gene detail

Detailed information of amic_s0054.g26.t1 in Acropora microphthalma

Genomic Location: sc0000054_pilon:346912...359935
NR annotation: XP_015760720.1, PREDICTED: COP9 signalosome complex subunit 4-like isoform X2 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0054.g26.t1

GAGGGTAGCAAATGATTGGCGACTTACCAAGATGGCGGCACAAATGAAACAAATGTTAAACTCCCCGTCCAACACTGGAGGCTCGCACAAGGATATCACAGGAAAATATCGCGAAATTCTGGAAAAGGTTTTCAAATTCCAGGAGCCATCCCTCTCAGAAGCTCTCAAAGTTTTTATTGAGGCCGTTGTTCATGAGAGTGTAAGCCTTGTTGTGTCAAGACAAGTGTTAACAGAGCTTTGCAGCTACATTCCAAACATGGAATCAATGTCAGCAAAGAATGTATCACACTTTATACTGGACAAATTGCAACCAAGGGCTATCTCATTTGAGGAACAGGTTGCAACTATACGGAAACACCTAGCTAAAATGTATGAAGATTGCCAGCAATGGAGAGAAGCTGCAAGGGTTTTAACAGGGATTCCATTGGAGACAGGACAAAGACAATACTCAGTGGATTACAAACTAGAAACCTACTTAAAGATTGCTCAGCTTTACCTGGAGGATGAGGACCCAGTGCAAGCTGAAGCATACATCAACAGAGCCTCGCTCCTCCAAACAGACACCAAAACTGAAAGGCTTCAGATACTTTACAAGGTTTGCTATGCTCGAGTCCTGGATTACAGACGCAAGTTTATTGAAGCTGCACAACGTTACATTGACCTGTCCTATAGAACTGCAATACATGAAGAAGAAAGAATGACTGCATTAAAGCATGCTTTAATTTGCACAATGCTTGCTTCAGCTGGTCAACAAAGATCAAGGATGCTGGCCAACTTGTTTAAAGATGAACGATGTCAGCATTTACCTGCATATGGAATCTTAGAAAAGATGTATTTAGACAGGATTATTCGTGGGCCGGAGCTGCTAGAATTTGCCAATATGTTGATGCCACACCAGAAAGCAACAACTGCAGATGGCTCAAGCATCCTTGACAGAGCAGTGATCGAGCATAACCTGTTGTCAGCCAGTAAACTATACAACAATATTACATTTGAAGAACTGGGAGCGCTGTTAGAAATACCACCGCAGAAGGCCGAAAGAATCGCTTCACAGATGATCTCCGAAGGACGCATGTCTGGCTCAATTGACCAGATCGATGGTGTTGTTCATTTTGAAACTCAAGAGATACTTCCTTCATGGGATAGACAAGTGCAGAATCTTTGCTTCCAAGTTAACAACGTGATCGAAAAAATCGAAACTTATGCGCCGGAATGGGTTGCGAAATACACCGAATCACAGATGTCTAGTTAAGGAATCGGGAGATCATAAAATGGAAGAAGATAAACCAATTCCGTGAACTGTAGATTTATTACAAAATGCAATCCATTGACAGCTACAAGGTGGTAAAAAGACGTGTCTCTCGATCGCCCTTCAGTCGACGACAGTGAAGAATATAATCATTATGTAATACTTCGGGAAATTTCGACATTTCCTTCCGTTGTGTTAATTTAACTTGAAATAAAGTTTAATTTTGACTTGCAATCATGATTCTCCTTTTCGAGATTCCTATTTTGGATTTAATATATGCCTGTTTTAAGTGATATTGTGTTACATAAGACAAGGTAAAGTAGATTGTACCGGTCGAGTTTGACTGATTTGCCAGTGGCGATGATAATTATGAAATATCATCGACGAAATGAATTTCCTGGAATGGGAAATTATGCACGATTCAAAATAAGAGAAGAGAAACTTCTAAGGACGATTGAGTTTCATCTGTTTAAGGGAAAGAGTCTTGTTTTTGAAGAGGCCTTTAATCTTCTGCGAAGACTTGGAGTTTACAGTGAGCGAAAGATAATTTGTTCACGTCAGGTGGTTGTTCCTAAAGTTGCAAATTGAACTGATAGATTTATGAGCAAAATAGAGACTTTTTCCGCCGAGTGGGAAATTCCAGGGAGCCTTTTATCTTTAATCGTTTTATTACCTTTTTGACCCAATTTCATTTTCACTCACGAGAAAGAAGAGACGAAGttttctttttgttttgtttccttttttttttttAAAGAAATTTGTTTCATTGTCTATCGTGGTCTTGGCCTTGTTAGACGGACAAAGATTTCGTGCTTGAGAATGTCGCCCGGCGGTGAGGGCATGAAGCCACCTGCCCCTCTCCTACTGGGTTGTTTCGTCAATTGATCGCGTGATTGGGTCTGGCTTAGCGAGTGCCTTCCTGGAGGCCTCACCAAACAATGAAATTCGTTACAGGTGCCAAGCATAACGAGTGCTTTGGGTTAAAATTAGCATCGTATAGATCCTTTTTTAAACATAGGAAGGTAGATGGCTTGGAGGTATATTTCCACACAAAACTGAAATTGTTTTTTTAATGTAAAAAAGGACCTTGAACTTCAGATCCGCTGTTTTTTAATAAAGATATTGGTAGACT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P0H6	COP9 signalosome complex subunit 4 OS=Danio rerio OX=7955 GN=cops4 PE=2 SV=1
O88544	COP9 signalosome complex subunit 4 OS=Mus musculus OX=10090 GN=Cops4 PE=1 SV=1
Q9BT78	COP9 signalosome complex subunit 4 OS=Homo sapiens OX=9606 GN=COPS4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008451 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01399 all species →	PCI	PCI domain	Domain	Interproscan
PF18420 all species →	CSN4_RPN5_eIF3a	CSN4/RPN5/eIF3a helix turn helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR000717 all species →	Domain	Proteasome component (PCI) domain	Interproscan
IPR041406 all species →	Domain	COP9 signalosome complex subunit 4, helix turn helix domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR040134 all species →	Family	26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10855 all species →	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008180 all species →	Cellular Component	COP9 signalosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12178	COPS4, CSN4; COP9 signalosome complex subunit 4	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.