Gene detail

Detailed information of amic_s0054.g59.t1 in Acropora microphthalma

Genomic Location: sc0000054_pilon:764140...779344
NR annotation: XP_015760684.1, PREDICTED: glutamate carboxypeptidase 2-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0054.g59.t1

ATGAAGATGTTAAACGAGGAGGAGAAAGGCATTTCGTATACTCGCCAAAAGCGCCGTCCGTTTGTCGTAGCAGGAATTATTCTCGGCTTCCTTGTAGTCGCTGCCCTAGGTATCGTCGTTGGTTATTTTATCGGACGTGGTCAGATAAAGAGTTGCGATGAAGGTAAAAAACACGACGACCAGTCTGACAAGCTCCGCAAGGAAGCTGTTGAGATGGTCTCTACAGATGAGCTGAGATCTAACTTAGAGTACTTTACTAAAGTTCCACACTTCCCGGGATCAAAGGAGAACTACCAGTTAGCGAAGTACATACGGAACAAATGGAAAGAGTACGGCTTCACGAGTGTTACAATGAAGAAATACATCGTAATGCTTTCACGGCCTATTAAGCCTGGCTTTGTTTCCCTGTATCATGGCGGATCCGAGATTTTCCGCTCTGCAGATCAAGAAACATTTTATATTCCCTCAGAGAATAACAGTAATGTGGTCACACCTTTTAATGCGTACGCGCCATCAGGAAGAGTAAAGGGAAAGCTTGTTTACGCTAATTATGGTCGCGAAGAAGACTTTGAAGCCCTGGAAAAGCTTGGGGTGAATTGTTCTGGCAAAATTGTCATAATGAGATACGGGAAAATTGGCCGGGCGACCAAGAGTAAACGAGCTCACAAGCTTGGCGCTATCGGTGCGATATATTACATGGATCCTCAAGAGTATGCCAGGAAAGGTGTTGACAAGGTTTTCCCAAACTACAACTGGATGCCAAGCACCGCCGTACAACGAGGCAACATCAAATCAACTCCTATACGCGGAGACCCACAGACCCCTGGCTACCCCTCTGTTGAGGGAATGTACCGCCTGCCAAAAGAAGAGGCAGAGAAATTGCTTCCCCAGATTCCAGTCCAGCCGATAGGTTACAAAGACGCATATCCGCTTTTGAAGACTCTAGTTGGCGAGCTTCCCTCCAGTCCATCCTTCCAAGGCGCATTGAACTTCACATATGGTGTAGAGATGGCAGAAAATGATACCAGAACAGTCTTGTTGAACGTTACCAACGAAAATTACGAAGCTGATGTGTACAATGTCGTGGGTGTCATCGAAGGTACTACCCACCCTGATGAGCTGGTTATGTTAGGCAATCATCGAGATGCGTGGATATTTGGCGCAGCAGACCCATCCAGTGGCACTGCAGCTATGATGGAGTTATCCAGAGTCCTTGGAGAACAACTGAAGAAAGGATGGAGACCAAAGCGTACCATCGTATTTTTGAGCTGGGGAGCTGAGGAGCCACAGTATATGGGCTCCGTTGAGTGGCTGGAGATGGCTGCTTTCAGACGAGCGTACGACATCGTCCAGCAGACTATTGAAATGCTAGACAATTCAGAGATAACATCGTTTGAAATTGATGGAATATCTCTGAGAATAGATTACCTAACCCGCACATTAGTAAACCTTGATAGCAACCGTACACCGACTTATGAAATTGTTCAACTTTTGGGGGAGACCAGCGGCCATCTCCGTGAAGTGGACTCGCAGTCAACTGTTTGTGCCATACAGTATGCCCCAAAAATATATTCTGGGGAATGTGGACGTCCAGCATTCGAAATCAAAGAAGAACAATTGTCTTTTCTTATTGACCAGGGCTTCCAGGTTCCCGTTATTGCCCAGTTGTTTAGGGTATCAACACGAACGATAGAAAGAAGAATGACAAAATATGACCTGACAATTTCAGGTGCATACAGTGACATCAGTGATGATGACTTGGACAGAATTACCAGAGAAGCCCAAAGAGAACACCCAGGAATGGGCATAAGGATGCTGAAGGGATATCTGAGAAGTAAAGCTTTAAGAGTACAGTGGGAAAGAGTGCGTCAGTCACTTCTCAGGACTGACCCTACAGGTGTACATCAAAGGTGGAGAGATTCCATTCGCCGCCGTAAGTACTGGGTTCCTGGACCTCTAGCTCTATGGCACATTGATGGAAATCATAAACTTATAAGGTGGAGAATTGTTGTCCATGGAGGTGTGGATGGTTATTCACGATTACCAGTCTTTTTACATGCATCTTGTAACAATCGAGCAACAACAGTTCTTGGTCTCTTTACTAAAGCCGTTGAAGAATATGGCCTTCCATCTCGCGTGCGCTGTGATAAAGGTGGTGAAAATTATGAAGTTGGCTGGTTTATGTTAAATCATCCCAACAGAGGACCAGGACGGGGAAGTATCATTGCCGGAAGAAGTACCCACAATCAGAGAATCGAGAGGTTATGGAGGGATGTCTATGGTGACTGCCTTTCCCTGTTTTATCAGATCTTCCAATACCTTGAAATGCATAATATGCTTGATGCAGATGATGAGATCCACATTTGGTGTTTACACATGGTTTACCTTCCCATGATCAACCAACATTTAGAAACTTGGAAAGCTTCATGGGCTCACCATCCAATGCGCACTGAAAGTAACAAATCCCCAATGCAACTGTGGATTAGTGGACTGCATGCAACTCAATTTGGCCAAGACATGTTAAGAAATGCTCGGGATCCAGTAACAGAGGAACAAATAAGTCAATATGGAATTGACTGGGATGGGCCAGTGAACACAGATGATGACAATCTAGTCGAAGTTCCAGAAACGTCATCTCCACTAGATGATGACAAATTGCAGTTATTACAACAGCGGATAGATCTGTCTGCTGATGATAGAAATTATGGAATACATACTTTTAATCAACTCATTGCAGAAGTAACAAATTTACTCCATTTATGA

Transcript

amic_s0054.g59.t1

AACCGATTAAGTTTCACTTACCTCTCAATTTAAAGCGTAATAATAAGACATTTCACGGTGAGCAATGAAGATGTTAAACGAGGAGGAGAAAGGCATTTCGTATACTCGCCAAAAGCGCCGTCCGTTTGTCGTAGCAGGAATTATTCTCGGCTTCCTTGTAGTCGCTGCCCTAGGTATCGTCGTTGGTTATTTTATCGGACGTGGTCAGATAAAGAGTTGCGATGAAGGTAAAAAACACGACGACCAGTCTGACAAGCTCCGCAAGGAAGCTGTTGAGATGGTCTCTACAGATGAGCTGAGATCTAACTTAGAGTACTTTACTAAAGTTCCACACTTCCCGGGATCAAAGGAGAACTACCAGTTAGCGAAGTACATACGGAACAAATGGAAAGAGTACGGCTTCACGAGTGTTACAATGAAGAAATACATCGTAATGCTTTCACGGCCTATTAAGCCTGGCTTTGTTTCCCTGTATCATGGCGGATCCGAGATTTTCCGCTCTGCAGATCAAGAAACATTTTATATTCCCTCAGAGAATAACAGTAATGTGGTCACACCTTTTAATGCGTACGCGCCATCAGGAAGAGTAAAGGGAAAGCTTGTTTACGCTAATTATGGTCGCGAAGAAGACTTTGAAGCCCTGGAAAAGCTTGGGGTGAATTGTTCTGGCAAAATTGTCATAATGAGATACGGGAAAATTGGCCGGGCGACCAAGAGTAAACGAGCTCACAAGCTTGGCGCTATCGGTGCGATATATTACATGGATCCTCAAGAGTATGCCAGGAAAGGTGTTGACAAGGTTTTCCCAAACTACAACTGGATGCCAAGCACCGCCGTACAACGAGGCAACATCAAATCAACTCCTATACGCGGAGACCCACAGACCCCTGGCTACCCCTCTGTTGAGGGAATGTACCGCCTGCCAAAAGAAGAGGCAGAGAAATTGCTTCCCCAGATTCCAGTCCAGCCGATAGGTTACAAAGACGCATATCCGCTTTTGAAGACTCTAGTTGGCGAGCTTCCCTCCAGTCCATCCTTCCAAGGCGCATTGAACTTCACATATGGTGTAGAGATGGCAGAAAATGATACCAGAACAGTCTTGTTGAACGTTACCAACGAAAATTACGAAGCTGATGTGTACAATGTCGTGGGTGTCATCGAAGGTACTACCCACCCTGATGAGCTGGTTATGTTAGGCAATCATCGAGATGCGTGGATATTTGGCGCAGCAGACCCATCCAGTGGCACTGCAGCTATGATGGAGTTATCCAGAGTCCTTGGAGAACAACTGAAGAAAGGATGGAGACCAAAGCGTACCATCGTATTTTTGAGCTGGGGAGCTGAGGAGCCACAGTATATGGGCTCCGTTGAGTGGCTGGAGATGGCTGCTTTCAGACGAGCGTACGACATCGTCCAGCAGACTATTGAAATGCTAGACAATTCAGAGATAACATCGTTTGAAATTGATGGAATATCTCTGAGAATAGATTACCTAACCCGCACATTAGTAAACCTTGATAGCAACCGTACACCGACTTATGAAATTGTTCAACTTTTGGGGGAGACCAGCGGCCATCTCCGTGAAGTGGACTCGCAGTCAACTGTTTGTGCCATACAGTATGCCCCAAAAATATATTCTGGGGAATGTGGACGTCCAGCATTCGAAATCAAAGAAGAACAATTGTCTTTTCTTATTGACCAGGGCTTCCAGGTTCCCGTTATTGCCCAGTTGTTTAGGGTATCAACACGAACGATAGAAAGAAGAATGACAAAATATGACCTGACAATTTCAGGTGCATACAGTGACATCAGTGATGATGACTTGGACAGAATTACCAGAGAAGCCCAAAGAGAACACCCAGGAATGGGCATAAGGATGCTGAAGGGATATCTGAGAAGTAAAGCTTTAAGAGTACAGTGGGAAAGAGTGCGTCAGTCACTTCTCAGGACTGACCCTACAGGTGTACATCAAAGGTGGAGAGATTCCATTCGCCGCCGTAAGTACTGGGTTCCTGGACCTCTAGCTCTATGGCACATTGATGGAAATCATAAACTTATAAGGTGGAGAATTGTTGTCCATGGAGGTGTGGATGGTTATTCACGATTACCAGTCTTTTTACATGCATCTTGTAACAATCGAGCAACAACAGTTCTTGGTCTCTTTACTAAAGCCGTTGAAGAATATGGCCTTCCATCTCGCGTGCGCTGTGATAAAGGTGGTGAAAATTATGAAGTTGGCTGGTTTATGTTAAATCATCCCAACAGAGGACCAGGACGGGGAAGTATCATTGCCGGAAGAAGTACCCACAATCAGAGAATCGAGAGGTTATGGAGGGATGTCTATGGTGACTGCCTTTCCCTGTTTTATCAGATCTTCCAATACCTTGAAATGCATAATATGCTTGATGCAGATGATGAGATCCACATTTGGTGTTTACACATGGTTTACCTTCCCATGATCAACCAACATTTAGAAACTTGGAAAGCTTCATGGGCTCACCATCCAATGCGCACTGAAAGTAACAAATCCCCAATGCAACTGTGGATTAGTGGACTGCATGCAACTCAATTTGGCCAAGACATGTTAAGAAATGCTCGGGATCCAGTAACAGAGGAACAAATAAGTCAATATGGAATTGACTGGGATGGGCCAGTGAACACAGATGATGACAATCTAGTCGAAGTTCCAGAAACGTCATCTCCACTAGATGATGACAAATTGCAGTTATTACAACAGCGGATAGATCTGTCTGCTGATGATAGAAATTATGGAATACATACTTTTAATCAACTCATTGCAGAAGTAACAAATTTACTCCATTTATGATCACATGTCATTTTCTTAACCTTGTCAATCATTTATAATGTCAACCTGAATTTCAATTTGTAAAAATTAATACAGGAAATAAATCAATGTAACATAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O77564	Glutamate carboxypeptidase 2 OS=Sus scrofa OX=9823 GN=FOLH1 PE=1 SV=1
Q9CZR2	N-acetylated-alpha-linked acidic dipeptidase 2 OS=Mus musculus OX=10090 GN=Naalad2 PE=1 SV=2
Q9Y3Q0	N-acetylated-alpha-linked acidic dipeptidase 2 OS=Homo sapiens OX=9606 GN=NAALAD2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000012 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04389 all species →	Peptidase_M28	Peptidase family M28	Family	Interproscan
PF02225 all species →	PA	PA domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007484 all species →	Domain	Peptidase M28	Interproscan
IPR039373 all species →	Family	Transferrin receptor protein 1/Glutamate carboxypeptidase 2-like	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR046450 all species →	Homologous_superfamily	PA domain superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR003137 all species →	Domain	PA domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10404 all species →	N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004180 all species →	Molecular Function	carboxypeptidase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01301	NAALAD; N-acetylated-alpha-linked acidic dipeptidase	EC:3.4.17.21	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.