Gene detail

Detailed information of amic_s0054.g64.t1 in Acropora microphthalma

Genomic Location: sc0000054_pilon:831783...837819
NR annotation: XP_029194425.2, growth arrest-specific protein 2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0054.g64.t1

CCGCGAAAAGAGCCAAAAGGAAAAATTTTTGCAATGTTTTTGTAAATTCGTCACTGATGGAGGCACTCTCAAAAGAGATGCAAATGAATGTTTTCCTGTCAGAGTTGCCTTCTTTCAGTTTCTACAAAATACCGTATCGAATTCGTGACGTACATTTGATTTAGAAGCGTGTTACAACGGTTTTATTGAAAAGCGAATGATTGCCTCGTGAACAGAGTCGTATATTTGACTGTAAATTGCTATTGTTTGGAAGTTTAAAATCGTTCATTCAAAGATATTTTAATCGATCGATGTCTAAAGAAAACATGGAACAGGAAGGAGAGGGTTCACTTGATTTTACCATGAAAATCGCAGAGCGATCGGAACAAGAATTGCTTCCGTTGAAAGAAGATTTAGCCGAATGGCTTTCCAGAGTTCTAAAAGAAAACATTACAGCTGACAACTTCATGGATCGCTTGGAAAACGGTGTGCTGGTTTGTAAACTTGCGCAGATAATGCAAGCTGCAGCGCGGAATGTTCCCAAAAATGGAAGATCTGTGAAACCGTTAGCTCCTTTCGCCTTCAAGTTTCACCAAAATGCTAAAGCAGGGACGTTCTTCGCTCGGGACAATGCTGCACATTTCTTGCAGTGGTGTCGCGAAATTAAAGTACAAGACTCAGTGTTGTTTGAATCGGATGGATTGGTTTTACAAAGGCAGCCGAGGGAAGTGATCTTATGTTTACTTGACGTGGCACGAGTGGCGGCTGATTACGGGATTGAACCTCCGAAGCTCGTTAAATTAGAAAAGGAAATTGATGATGAAATCGCTGCCGAGGGGGCAAAAAAGCCAGAGTTGAAACTAGCTGTGAAAAAAGACAAGAAAGTGGCGAAAGCAACCAGTATTGATGCTGAGGTGGCAAGGCTTTCTGCTAAGTATGGCATTAGGATTGAGAGAATTAAAGAAGGCAGATATGTTGTGGATGGAAAAATCAATATTTTTGTGCGGATTTTGAGGAACCATGTGATGGTAAGAGTTGGTGGTGGCTGGGACACATTGGAACATTTTCTCAGTCGACATGATCCAAACAAGGTTGGAAGAATCCTGACTTCAACACCTCATTCATGTGCACATCATCATCAACTGGCAGGAGTTGCTTGCTCAGCCTCAACATAAGGCTTTAAAGTGCAACATCTCCTTAAGAATCCAATTTGCTAGAAGTTAACAGCTTGTGGTTGCTTGAGCCAAAAAATATTGCAAGTTTTCTGTTTTGTTGGTCATTATTTCTTTTCAATCCACCAAGGGGAACTTGCTGGCCAATGCTCAAAAATGCATGTGATTGCAACAACAACAATTGTCACAATTAAAAGAAACTTTATTTTTGTGGAGCCTGAGCTTGCTCTTTCGTAACCAAATATCTGCTTTTGTTAATTCTTTTAGTTTTTATGTAGACATTTCACTTATTAATTTTTGTTAGTCTCGTTAATTTTGCAATTTTGTGGATTTGAAAACATATCATCTGAGTTTGTTTGCAATTTCTCTCAGCAATTTTGTTATTGACAAAAGTGTAAACAGTGGCATTAGAAAAGATGAGTTTTAAAAAATTGAATTCACCCCTTCCCATGATTGAACATTAATTTGTTTTAAAGGGAGACTTTTTAAAGAATCTTTCTGTAACCATTTTTTTAAAGTAAAATTTAATGTAGCTATCATTTAAGCCAAGCTTAAATAGCCATTGTTTTTTTGTTAGCCATCCTTGGACGGGGACACATAACTTGATGGAATAATAATAATTATTATTATTGTCGTGAATCTATGAAATTTGAGGTAGGTCAGTGCCTTTTCTGGCAATTAAAGCAATGTCAGATTAAAACACCCAAGTAACTCCAATGCATTTTTTCAAACTGGCAGCAAAAGGCACAATGTTTTATTGCGCAACAAACAATTTATCGAACATAAAAGAAGAGAATCTGGAAATAAAATAAAAAAGTTATAGACCACTTTCAAAAATGGCGGCGCATTTTGTTATTCCTTTGTATTTAAGTTAATTAGACCTACTCGCCTCACTTTGGTGTAAATATTCTTTAGAATTTTTCGCATGGCAGTGAGGCTAATAAGGCTTATTAACATCAAAACAAAAGAATATTAAATTTGATTGCCATTTTGAAAGAGGTCTATTTGGCTAattGTTGCAAGGAAATAAAATCAAATGAGTTTCCTGTTTGTTTCATATTCTGACCTTACCTCTGTTTGAAACAAGTGAACATTACCTTCTCCATTTCCCAAAATTTAATAAACCCTGCGAATTGTTTGAAATTGCACTGAAACATAGATGCCAGTGGCAACAAAATACTAAATGTTCTGATGCAACGTTAATAATATTGTTTCTTTTATGTTAATGCAAACTAGTAAACATTAGAGTAAGGGTTTCCCAAGGATATAATATTATTGTAAATGCAAAAGCCGGGggggggggtactttaggaatttctgggcgggaatgtgccgctaggactctggaaccccttagcctataccagagctagtttcagctggattttgccaccctatactagagtaaattcctggtttcttcagtctagataaaatcttcaaccaactggtcagtttcgtgtaaaatgatagcttattctagacccaaactctctgatttatataccctatgctagagtaaactgcttgaaaaccatacccttcacagcagcacatacctatatggcccatatatgacagtacccccctccCCCCGGGTGCAAAAGGCACTGTAGTTAGTGGACTGCTGAGGACTTGTCCAGCAGTTATTACTTTGAGCTCAAATTGTGCTTGTGTGAAGGAAAACAATAATTAATTTTGTGGCCTCAATTAGATTTTATTAGTCTAGTTAGGATCTGTGAATACCAAAGAGCTGTATGACTTTCATATTTATATTGACAGCTATAGAACTTGATATTTTGAAAAATGTAACACAGTCTTTCTATTTACAAGATATCTATTTTTCTATAATAATAATTATTGTAAGCCAGAACGTTGTACACATTTTTAGTCAATGAGAAGGATGGAAATTTAGTTAAGGCACTGCTTTCCTGTATAGGCCTTGAATTAAAGTGTATTGTTTGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43903	Growth arrest-specific protein 2 OS=Homo sapiens OX=9606 GN=GAS2 PE=1 SV=1
P11862	Growth arrest-specific protein 2 OS=Mus musculus OX=10090 GN=Gas2 PE=1 SV=1
Q86XJ1	GAS2-like protein 3 OS=Homo sapiens OX=9606 GN=GAS2L3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001140 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02187 all species →	GAS2	Growth-Arrest-Specific Protein 2 Domain	Family	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036534 all species →	Homologous_superfamily	GAR domain superfamily	Interproscan
IPR003108 all species →	Domain	GAR domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46756 all species →	TRANSGELIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0008093 all species →	Molecular Function	cytoskeletal anchor activity	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0051764 all species →	Biological Process	actin crosslink formation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0054.g64.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.