Detailed information of amic_s0054.g72.t1 in Acropora microphthalma

Genomic Location: sc0000054_pilon:947582...966690
NR annotation: XP_044172898.1, uncharacterized protein LOC114960272 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96GW7Brevican core protein OS=Homo sapiens OX=9606 GN=BCAN PE=1 SV=2
Q99715Collagen alpha-1(XII) chain OS=Homo sapiens OX=9606 GN=COL12A1 PE=1 SV=2
Q5IS41Neurocan core protein OS=Pan troglodytes OX=9598 GN=NCAN PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008086 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13385
all species →		Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00188
all species →		CAPCysteine-rich secretory protein familyDomainInterproscan
PF00092
all species →		VWAvon Willebrand factor type A domainDomainInterproscan
PF00008
all species →		EGFEGF-like domainDomainInterproscan
PF00059
all species →		Lectin_CLectin C-type domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR036465
all species →		Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR000082
all species →		DomainSEA domainInterproscan
IPR002035
all species →		Domainvon Willebrand factor, type AInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR035940
all species →		Homologous_superfamilyCAP superfamilyInterproscan
IPR016186
all species →		Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR014044
all species →		DomainCAP domainInterproscan
IPR016187
all species →		Homologous_superfamilyC-type lectin foldInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan
IPR036364
all species →		Homologous_superfamilySEA domain superfamilyInterproscan
IPR001304
all species →		DomainC-type lectin-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47635
all species →		CUB DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0054.g72.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP