Gene detail

Detailed information of amic_s0055.g34.t1 in Acropora microphthalma

Genomic Location: sc0000055_pilon:943164...951688
NR annotation: XP_029212428.2, RNA-binding protein NOB1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4R537	RNA-binding protein NOB1 OS=Macaca fascicularis OX=9541 GN=NOB1 PE=2 SV=1
Q3T042	RNA-binding protein NOB1 OS=Bos taurus OX=9913 GN=NOB1 PE=2 SV=1
Q9ULX3	RNA-binding protein NOB1 OS=Homo sapiens OX=9606 GN=NOB1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007147 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17146 all species →	PIN_6	PIN domain of ribonuclease	Domain	Interproscan
PF08772 all species →	NOB1_Zn_bind	Nin one binding (NOB1) Zn-ribbon like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036283 all species →	Homologous_superfamily	NOB1 zinc finger-like superfamily	Interproscan
IPR033411 all species →	Domain	Ribonuclease, PIN domain	Interproscan
IPR014881 all species →	Domain	Nin one binding (NOB1) Zn-ribbon-like	Interproscan
IPR039907 all species →	Family	RNA-binding protein NOB1	Interproscan
IPR017117 all species →	Family	Ribonuclease Nob1, eukaryote	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12814 all species →	RNA-BINDING PROTEIN NOB1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0042274 all species →	Biological Process	ribosomal small subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11883	NOB1; RNA-binding protein NOB1	-	Proteasome	ko03051	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.