Gene detail

Detailed information of amic_s0056.g58.t1 in Acropora microphthalma

Genomic Location: sc0000056_pilon:955405...973304
NR annotation: XP_044181068.1, protein argonaute-2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UL18	Protein argonaute-1 OS=Homo sapiens OX=9606 GN=AGO1 PE=1 SV=3
Q8CJG1	Protein argonaute-1 OS=Mus musculus OX=10090 GN=Ago1 PE=1 SV=2
Q5ZMW0	Protein argonaute-4 OS=Gallus gallus OX=9031 GN=AGO4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000825 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16486 all species →	ArgoN	N-terminal domain of argonaute	Domain	Interproscan
PF16487 all species →	ArgoMid	Mid domain of argonaute	Domain	Interproscan
PF16488 all species →	ArgoL2	Argonaute linker 2 domain	Family	Interproscan
PF08699 all species →	ArgoL1	Argonaute linker 1 domain	Domain	Interproscan
PF02170 all species →	PAZ	PAZ domain	Domain	Interproscan
PF02171 all species →	Piwi	Piwi domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003100 all species →	Domain	PAZ domain	Interproscan
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR014811 all species →	Domain	Argonaute, linker 1 domain	Interproscan
IPR032474 all species →	Domain	Protein argonaute, N-terminal	Interproscan
IPR032473 all species →	Domain	Protein argonaute, Mid domain	Interproscan
IPR003165 all species →	Domain	Piwi domain	Interproscan
IPR032472 all species →	Domain	Argonaute linker 2 domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0016246 all species →	Biological Process	regulatory ncRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0035198 all species →	Molecular Function	miRNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0056.g58.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.