Gene detail

Detailed information of amic_s0057.g30.t1 in Acropora microphthalma

Genomic Location: sc0000057_pilon:616178...626712
NR annotation: XP_029202132.2, LOW QUALITY PROTEIN: SE-cephalotoxin-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0057.g30.t1

ATGGTAAAGGTAGCTTCGTTGGCAGAAATTCTTTGGATTTTATGCCTTTTCAGCTCAATCAGTTCAGCGTTGGACCCTGGAGAGCAGGCTAAGGCAACTACAGCTCTTGATACCGCTCAGTTTGCAATAAACGCTATTAATGAAGAATATGTAGCTCAAGCAAAAGCCATCGAAGAGGCACTGAAGGTTTCGACTCAAGCGAAAAGCGCGGACCTTCTGAAGAGGCAGACGGAATTAGCTAAGTTCGGTTCCAAAGTTGGCAAAGCACTCAAAGCTGTGCAAGCTGCATCTGCTATTGCAAGTTTTGTCTTCACTTTCTTCATGCCAAGTGAACTAGATGTCATCACGAGCTTGATAAACGAACGCTTCAATGAAGTCAATGCCAAACTCGATCGTATAGACGAGAAACTCGATGAAATGGAGAAGTCTATCAAGGCGGATACTGCTTTCAACGTTTTCCTGTCTGCCTGGATCAAATGGGAGTATAAGGCGAGGAATGGGGCCAAGAAATTATCTGACATCCGCAAGGCAATGGGGACTAAAACACGAAGAATAGACCAAGTGAAGCTTGCCGAAGAATACGTTAAATATTACGAAACCAACAACTTGGATGGCAATGTCCTAAACCTCTACAGAATGGCAGCTCTGCCTGAGGGTGGAACCCAACGCAACATCTTCGACAGATTTATAGCTCAATTTGGCTGCGATATAACGAAGCTGTCAGAATTAATGATTCTCGTAAAAAATATAATGATCAGTGCTGGCCAACAAGAGTTAACCTACTATTACTTTAAGGGCGACCAAAGCAGAGCGAACAGTAGTTTCAAGGACATTCAGATGTACTTTTTCGAAATTCGTCGAGCATTTGACGATCGAGTCTGGCACTGCAGAAGAGACTCCCTAGACAACGCGAAGAGGGATGCTAACAAAATTTTGAAAAATATGAAGGGATCTTCGCGGGAAAGCATAGTTCGAGCCATCTTTAATGAACTGAAGCTTAAGTACCCCTGGTACACATGGGCTGTGGCAGCAGTCAAGAGTGATCGCCCAAGCATTCCCGATCTGGAGTTGAGAGGTAGTACGTATTTTCGGTTAGAAGATCGCTCAGATGCGAACAAAGTTAAGGGTTATTTTGTGGTCTACGAGGACACCAGGTCGTCCGCAAGTTGCAGTGACATCACACAAGCAAAGACCTTGCTGGTTTTCAAAAAATGCGACGGGTGCAATTCTGATTATATCTATGCTGCTGATAACATCCTGACCAAGAAGAGGTGCGGAGAGTCGACGTTGGAAAGGGTCGTTAATTTTAGAGACCAATGCCAACTATGCGGCTACGTAATCCCTTATCCCACTTGTTACTGTGCTGACCTTGTAAAAGAGGAAATCAAAACATGGGCCTTTATTGCATCAGCGGTCAACACCATTAAAGACATTTGTACGTCTGACAAGTGCAGTAGTCACGGACAGTGCAGGCAAATACCATTCACGACAACTCATCAATGTATCTGTAATAGGGGATATGAAGGCGAATCGTGTGAAAAACGATTAGACTTTGATGATACCATTGAAAAGTTTATCGCCGAATTACGAAAAACCTTTAAAGTCGTAAACTACGTTCCCACTACTGTGGACGTGTTCTTCTCCATAAGGTCTTTGTCCAAGAAGTTAAACGTGGTTCTACAGAAGATCAAGACATCCTTTGCTCATACCAATAACATCATCCAACATTCTCAAACCATTTACAACGTAGAAGATATTGCCGACCTTTATGCCAAACTACAGAAGAACGAGATGACATTTGATCAGTTCGGCCGAAGAATCGAAAATTATCTGAAGACAGTTCCAACTTTTAAGCTACAAAATAGATTGAAGAAGATGATCCTTGGTCAAGGTACTTTAGACACTCCTGGAAATGACATTTACAATTCGTACAAGCGAGAATACCTAAGTCACAATGGAGGTGGTTGTTCGGCAAAGTACAATGAAGATGTCAACGGCTTCAGGGACAGCTTAGCTTATTTGGATCAGGCATTGGGAGAGGCACTGTTACTTCATCAAAAATGGTTACTTGAAACGAGAGGAACGACAAAAACCCTCCAAACAAAGTACAAGAAAGAAGCTCAGTATATCCAAAATATCTTTAAGAGTCGACAGCTGAAGTACAACCAATACTGGAAGAATTACAGCTGTGGTTCTCTAAGTGTAGATGGTGCGGGTGTTTCGTGCAAGGATGAGTTGAGCTTTGAGGGCATGACTGTTACTTTAAGGTGCAACAAGCAGCGGCTCGCGACCCCAACACAAGTAACTTGCAAGAAGATCGGCAACGTCTTGAAATGGAACTCTCAACCAAAATGTAAATTTGTTTGGGGCAATTTTGGTGGCTGGAGCCGTTGTTCCAAGACTTGTGGTGGAGGATTCAAGCGCCGTTACAGATCTTGCTTAGGTACAACGAACATCCAACACTGCAAACGAGACCAGGGTGGATTAAACTACCAGACTGTTTCATGCGAGACCCAAGATTGTTGCTCTTCTCAGTATGGGAAGTTCAAGTGTTCCAACAGGAAATGCATATCGAAAAGTTTGATTTGTGATGGAAACAATGATTGTGGCAACAACGACGACGAAAGCAGATATCGATGTCCAAACTACATTCGATCGGGTGACTTGATAGCATTGAAAAGTAACGCTAAAACCAATCAGTGGTTGAGCTGTTATTGCACTGTCAACTGTGGTGTCAAACGTTGCAAACTTCGAGGTTGTCCTGGTAGTCAAATGACTGGCAGCGATTGGAATTCCTGCCGCGGTGAAGCATTCGTACTGTACTTGACCGGCTACGGTAACGGCGAACCTGTTAGAAGTGGTGACCGAGTCGCACTTTATTACGGAGCCGGTCACTGGCTGAGCTGCTCGGGCAGTGGGCGCGTTTGTCCAACACGGAGTTGTCCAGGATACGGCAGGTGGAATTCTGCACATACAAGGAAGTGCCGGGGAGAAATGTTCTGGATATATTCACCGGAACGTCAAGGCAGGTGCTCCAGCGACACAAGACAGACCTGTCAAGGAAAGCCAATACAGAAGGGTGACAACGTCTTCATAAAGTACTCTCTGAAGGACAGGAAAAGTTATTGGCTGAGCGGAGACGATAAGGCCATCAGAACCAGAACCTGCCCTGGCATTTATATCAGCAAATCTGACCGAAGATGTAGCTCGGAGAGCTGGAACATTTTTTCCCGCTAG

Transcript

amic_s0057.g30.t1

CAACCAGTTCATTTGCTCTATGACTCTTGGGTGAACATCTTTCAAAAGTATAATTGACACGGGATTTGGTTGTTGCCACAACAATGGTAAAGGTAGCTTCGTTGGCAGAAATTCTTTGGATTTTATGCCTTTTCAGCTCAATCAGTTCAGCGTTGGACCCTGGAGAGCAGGCTAAGGCAACTACAGCTCTTGATACCGCTCAGTTTGCAATAAACGCTATTAATGAAGAATATGTAGCTCAAGCAAAAGCCATCGAAGAGGCACTGAAGGTTTCGACTCAAGCGAAAAGCGCGGACCTTCTGAAGAGGCAGACGGAATTAGCTAAGTTCGGTTCCAAAGTTGGCAAAGCACTCAAAGCTGTGCAAGCTGCATCTGCTATTGCAAGTTTTGTCTTCACTTTCTTCATGCCAAGTGAACTAGATGTCATCACGAGCTTGATAAACGAACGCTTCAATGAAGTCAATGCCAAACTCGATCGTATAGACGAGAAACTCGATGAAATGGAGAAGTCTATCAAGGCGGATACTGCTTTCAACGTTTTCCTGTCTGCCTGGATCAAATGGGAGTATAAGGCGAGGAATGGGGCCAAGAAATTATCTGACATCCGCAAGGCAATGGGGACTAAAACACGAAGAATAGACCAAGTGAAGCTTGCCGAAGAATACGTTAAATATTACGAAACCAACAACTTGGATGGCAATGTCCTAAACCTCTACAGAATGGCAGCTCTGCCTGAGGGTGGAACCCAACGCAACATCTTCGACAGATTTATAGCTCAATTTGGCTGCGATATAACGAAGCTGTCAGAATTAATGATTCTCGTAAAAAATATAATGATCAGTGCTGGCCAACAAGAGTTAACCTACTATTACTTTAAGGGCGACCAAAGCAGAGCGAACAGTAGTTTCAAGGACATTCAGATGTACTTTTTCGAAATTCGTCGAGCATTTGACGATCGAGTCTGGCACTGCAGAAGAGACTCCCTAGACAACGCGAAGAGGGATGCTAACAAAATTTTGAAAAATATGAAGGGATCTTCGCGGGAAAGCATAGTTCGAGCCATCTTTAATGAACTGAAGCTTAAGTACCCCTGGTACACATGGGCTGTGGCAGCAGTCAAGAGTGATCGCCCAAGCATTCCCGATCTGGAGTTGAGAGGTAGTACGTATTTTCGGTTAGAAGATCGCTCAGATGCGAACAAAGTTAAGGGTTATTTTGTGGTCTACGAGGACACCAGGTCGTCCGCAAGTTGCAGTGACATCACACAAGCAAAGACCTTGCTGGTTTTCAAAAAATGCGACGGGTGCAATTCTGATTATATCTATGCTGCTGATAACATCCTGACCAAGAAGAGGTGCGGAGAGTCGACGTTGGAAAGGGTCGTTAATTTTAGAGACCAATGCCAACTATGCGGCTACGTAATCCCTTATCCCACTTGTTACTGTGCTGACCTTGTAAAAGAGGAAATCAAAACATGGGCCTTTATTGCATCAGCGGTCAACACCATTAAAGACATTTGTACGTCTGACAAGTGCAGTAGTCACGGACAGTGCAGGCAAATACCATTCACGACAACTCATCAATGTATCTGTAATAGGGGATATGAAGGCGAATCGTGTGAAAAACGATTAGACTTTGATGATACCATTGAAAAGTTTATCGCCGAATTACGAAAAACCTTTAAAGTCGTAAACTACGTTCCCACTACTGTGGACGTGTTCTTCTCCATAAGGTCTTTGTCCAAGAAGTTAAACGTGGTTCTACAGAAGATCAAGACATCCTTTGCTCATACCAATAACATCATCCAACATTCTCAAACCATTTACAACGTAGAAGATATTGCCGACCTTTATGCCAAACTACAGAAGAACGAGATGACATTTGATCAGTTCGGCCGAAGAATCGAAAATTATCTGAAGACAGTTCCAACTTTTAAGCTACAAAATAGATTGAAGAAGATGATCCTTGGTCAAGGTACTTTAGACACTCCTGGAAATGACATTTACAATTCGTACAAGCGAGAATACCTAAGTCACAATGGAGGTGGTTGTTCGGCAAAGTACAATGAAGATGTCAACGGCTTCAGGGACAGCTTAGCTTATTTGGATCAGGCATTGGGAGAGGCACTGTTACTTCATCAAAAATGGTTACTTGAAACGAGAGGAACGACAAAAACCCTCCAAACAAAGTACAAGAAAGAAGCTCAGTATATCCAAAATATCTTTAAGAGTCGACAGCTGAAGTACAACCAATACTGGAAGAATTACAGCTGTGGTTCTCTAAGTGTAGATGGTGCGGGTGTTTCGTGCAAGGATGAGTTGAGCTTTGAGGGCATGACTGTTACTTTAAGGTGCAACAAGCAGCGGCTCGCGACCCCAACACAAGTAACTTGCAAGAAGATCGGCAACGTCTTGAAATGGAACTCTCAACCAAAATGTAAATTTGTTTGGGGCAATTTTGGTGGCTGGAGCCGTTGTTCCAAGACTTGTGGTGGAGGATTCAAGCGCCGTTACAGATCTTGCTTAGGTACAACGAACATCCAACACTGCAAACGAGACCAGGGTGGATTAAACTACCAGACTGTTTCATGCGAGACCCAAGATTGTTGCTCTTCTCAGTATGGGAAGTTCAAGTGTTCCAACAGGAAATGCATATCGAAAAGTTTGATTTGTGATGGAAACAATGATTGTGGCAACAACGACGACGAAAGCAGATATCGATGTCCAAACTACATTCGATCGGGTGACTTGATAGCATTGAAAAGTAACGCTAAAACCAATCAGTGGTTGAGCTGTTATTGCACTGTCAACTGTGGTGTCAAACGTTGCAAACTTCGAGGTTGTCCTGGTAGTCAAATGACTGGCAGCGATTGGAATTCCTGCCGCGGTGAAGCATTCGTACTGTACTTGACCGGCTACGGTAACGGCGAACCTGTTAGAAGTGGTGACCGAGTCGCACTTTATTACGGAGCCGGTCACTGGCTGAGCTGCTCGGGCAGTGGGCGCGTTTGTCCAACACGGAGTTGTCCAGGATACGGCAGGTGGAATTCTGCACATACAAGGAAGTGCCGGGGAGAAATGTTCTGGATATATTCACCGGAACGTCAAGGCAGGTGCTCCAGCGACACAAGACAGACCTGTCAAGGAAAGCCAATACAGAAGGGTGACAACGTCTTCATAAAGTACTCTCTGAAGGACAGGAAAAGTTATTGGCTGAGCGGAGACGATAAGGCCATCAGAACCAGAACCTGCCCTGGCATTTATATCAGCAAATCTGACCGAAGATGTAGCTCGGAGAGCTGGAACATTTTTTCCCGCTAGAGGTCATGCAGACGGCAGGACAATTTTTTTTACAAGTATTTTCCTACCTCCTGTTGTTACTATCGTATCCGATCATTTGAAAGTTCACCAAAGTTTTATATTTACCATGATTTAGCCGTGTGTGACTTGACTTCCTTAAGGCCGATTTAAGCGGTTCGATATAATTGAATGCAGATGGCTCAGACACAAAGCCTTTATAACGCTACGCACTACTGGAAAACGACGACACTTAAAAAGAACCGGGATTTTTTAAACTGTTTTAAAACTTTTCAACAGCCGTACGTAGAAAAGATGAAAGTGAGAGTTATATTCACTGGCTGTGAATGCGCACCCTGTGGAAGCTGGATGCGATCGCGCGATACTTGTAAGCAAACGTCGTACTCTCTAAATCGGCCTTCAAGATTCTTCATTTGATAGTTTTTGGGTTGTTTAATGTTAAACTGTTTTTGAGGTTTGTAAGAACTGTGAAGCAACTATCTAAGAAAACACAAGTCACTAGTAATACATAATTAGTACACGTTCAGCACAGACCAGACTAGCACCTGCTCTATAAAATTTATTTTTTTAGAAGAGACTGCAGACCATGTCGCAAAAGTAGCCTAAAAAACGCCAGCATCACAAGTGAAAGGATGATTGAAAGTAAAAACTGACTGTCGGTACTTTTACGACCAAAGTAGGTTGGAGCTGTTTTAGCACAGAGGCCCCCTTTTCAGTTTTGCAACGATACGTGCCTGCATTTCTTGTCCAAATATATTCTGACTAGCGTGGTTTCTTACGCACTATGTTCTGCTACTAGATCTGCGCAAACGCTATCCAGTTAGAGCAAGTACAAGAAGACAGGCTGAATTCTCAATTCAAAATCTGTCATACAGAAAGATTGTTAGACTTGCTAGTTTAGTGATTTTCCTTACTTTGGCAAAAGCAAGATTCCACTGATTTTGTTGATTCGCTGGAAAGTTTTTGTGTGAGTAGGATGTAGTGATAGATTGAATGTATTGTCATTGATGATGATATCTTCAAGCCATGCTTATGTGTATTTGGTTTTGACCGTACTTGACGTTACGAACGGTCAACTGGGTCGAAGGATCAGTAATAAAGTTGTTGACCACCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B7W114	Cephalotoxin-like protein (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1
B2DCR8	SE-cephalotoxin OS=Acanthosepion esculentum OX=31210 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009818 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR039051 all species →	Family	SE-cephalotoxin-like	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR40472 all species →	RICIN B-TYPE LECTIN DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0057.g30.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.