Gene detail

Detailed information of amic_s0058.g17.t1 in Acropora microphthalma

Genomic Location: sc0000058_pilon:857888...866572
NR annotation: XP_044168916.1, uncharacterized protein LOC114964162 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0058.g17.t1

ATGTGGGAAGACATCTGTGCATCGGAAAATAAGTGGGTAACACACACCTGCAAGACGGCGGGCTGCTCAGAAGGATACGTTACAGTTGATGGAAACGAATACTTAAAGAGATCGAAGTGCGCTCTTCCAATAGAGAAGGTGAAAATTCGGAAAGATTTGCCGCAAATATATAAATGTTGCCCGAGTTTGCCACTGCCCGGCGGAAAGAACCAAAAGCCATCTAAATTCTGTGCAACTCACCAGTCGCAGACTGCAGAAACATTAGCAGAAGAAGTTAATGTTCCGCCGGAATTTAATTCAGCCAGAGTGGAGGCGGGTCTGTTACCAGAAGATGAATGTGAAGCACACCAAAATGAAAAAGGGTGTAAAAAGAAAGAAAACATTTCGCTTTTCTTTCAAACAACAGCGGGTATGCTTGCTCTCATAAGGCCTTACGGCATTGTTGTAAGTATGACCGAAATGTTTACAAGTAAATCTTACACCCAGGTATTTCTGTTTATCCTTGGAACCTTTTGTGGCAATTTGGAGCATTTCAATAGACTCAGGTACTTAGGGTACGATAGGGCGTGTGGCTTGGTGCCTTTTTTAAAAAATCAGGCTCAAAATGGTAGTGCGGGAGCAAAGGTGCTATTGGATAACGTCCAATTTCTGGTAGACATTTTTCATGTATCCAAACACACTGAGGAAGTTTGTATGCCTCCTAAAAATCCGAACTGTCTTTATCACACGCATCTGCCAAAGTTTGATGAAATCAGGGGCGTGAATACTGAATCCTGCGAACAGGGATTTAAGAGATTGAATCAGTACTTTGAGCTTACTCGAAAGATGACTCAATTTAAGAGGAAAGTGTTGTTCTGGTTTGTCAACGAATGTTTTAATACTGACTTAGAGGCAGAGTTAAAACGGAAGAATTTTTTTTCGAAATTGCCTTCCTACTCAGGCGTTAAGTGGTGCCACCATGCCTTTGAAGTTAAGAAGAATTACGGACGAACAGTCACATTTCGAGATATCGTGAAGTTTGTTGAAACAGAAGCCGATCTTGCTACCGATCCGGTCTTCTCCCCAGACGCTCTTAAGGAAGAACGGAAGAAGGGCCCCGACAAGACCAAGATCTTTACTCATCGGAGACGACCACCAAATGCAAACAGCTCTACCACTTCTACTGCCCACTCTCAGAGGAACAACTACCCCGCTTCTGAGCCGAAGTCATCATCAAGGATGTGCCCTGTTTGTTCAAAGGCACCTACCCTTCACAACTGTGACGAATTTAGCAGGAAGAACCTTGAACAACGCCATAACTTGGTACAGTCGGCTGGTCTTTGCTTTGGTTGCCTCGGTAAAGGTCATTACTCCAAAGATTGCGGCAAGAGGTCGGCCTGTCATAAGTGTGGGAAGCCTCACCCGACAGTTCTGCACTATGATCCGAAAGACGACAAGGAGCTAGGGAATCAAGAGAAAATAGAAGTTCATGAGGATAGTGGTTCAAGCAACGTTTCGAGTGTCTGTCGCCATACAGTTGGTGACCGAGCAAACGTGACAAACTCGATGATTATTCCCGTGTGGTTACACCACAAGGACAATCCACAGAGAGAAATTTTAGTTTACGCCCTCCTAGATGATGCGAGTGACACGACATTCATCAAGTCTCAAACTCTTCGTGATCTTGGCTTATGCGGTCCAGAGATAAAATTGAACTTACACACGATGCTGGGAAAAGAAGAAATAACCGTCGAAAGGATGAACGATCTGGTGGTCAAGCGAGTCGACAAAAGAGTGGAAGTCGAGCTTCCCAAAACATATTCGAGGACAAAAATTCCTCACCGGAAGAAACAGATCCCTACACCAGACCCGAGAGAGGTCATCCTTGGAAAGGGGGACGATCCATATGCTGTTAGAACTCTGTTAGGATGGGGAATCATAGGACCAGTTACCCCGTATCCAGAAAGTCAAGACAAAGACGAAGAAGCCGTGTCTGCAACATGCAATACGATCATGTCTGgttgCgccaactttgcgttaaaagcggccGcAgatgataatgaagaGAATCTTGGTTGTGCAGCAGCTGAATTTGTCCGAAGGGACTTTTATGTAGATGATGGCTTAAAGTCCGTTGCATCAATACCCGACGCAATTGCCCTCATCGAAGATACCAAGGAACTGTGTAGAAGAGGAGGCTTTCGGTTGCACAAATTCACATCGAATTTCAAGGAAGTCATCGAAGCTATTCCGGTTGAAGATCGTGCTGAAGGTATCCAGAAGATTGATATGGATAGAGATGCACTCCCCATAGAACGTGCTCTGGGTGTGCAGTGGTGCATCGAGAAGGACTCCTTCCAGTTCAGGATCACCTTGAAGGATCGCCCGTGTACCAGACGTGGCATTCTATCAACAGTAAGCTCGATATATGATCCGTTGGGGTTTGCGGCGCCACTTCTTCTAAACGGAAAGAAGACTCTTCATGAACTGTGCAGAGGTCAAGTAGATTGGGATGACGAGGTTCCAGAAGACATCAAAGCAAGGTGGATGAAGTGGATAAGTGAATTACCTGCTCGACAAGAACTGCTGGTCCCTAGATGTTATAAGCCCACAGACTTTAGACGTATTGCTCGTGTGGAACTGCATCACTTCTCCGACGCAAGCACAAAATGGTATGGCCAGTGTTCGTATTTGAGGCTGAAGAACGAAAAGGACCAGTTCCACTGTTCATTCGTTATGGGAAAGGCAAGAGTTGCCCCACTCAAACCAGTAACAGTGCCTCGTCTAGAAATAACAGCAGCGGTGGTATCGGTAAAGACTAGTGCTCAATTGCAACAAGAGTATGAAGACGTGAAAgaggttttctggaccgacagtaaggttgttcttggctatatagccaacgaaaccaggagatttcacatcttcgtagcgaatcgggtccaacaaattcaagaacattcctctcctgatcaatggcggtacatagctcccaagagtaacccagctgatcacgcttctcggggtcttactccccaagggctttcagcatcgaactggatcacagggccagctttcctttggaatgatgagagcaaagaaggctgtcgtgctgtgtCTTACATAAGGAAACTCAGAGAAAGGATTGAGTGTAGAACCAGAGgaaagaatcatgtttcccacctcatcatcaaacgttgcctcgaagaagtggaacaccaagggaaaggcataacctggaccgaagtatgctcacgtggttattggcttgtgggtggatcaagtgtagtttcctcttacatttcaaagtgcatcaagtgtcttaagctaagaggtgtcgttaaggaccaaaagatgcctgacctaccaccagaccggttggaaccagcgcccccatttacttattgtgctgtggattactttggtccatggatcattaaagatggaagaaaagaattgaagaggtatggtgttctcttcacatgcatggtatcaagggccatacacctagaatgtgcaaactccatggatacagcctcattcattaatgcgctacgtcgcttcatctgccgcagaggtcccatacgccaaatgaaaattgaccaaggaagtaacttcattggtgcgaggcaagaactgaaggaagccttggctgagttggatcaccagcgaatcagtacagagctactcaaagtcaactgtgactggttcagctttagaatgaatgtgccttcagcaagtcatatgggtggggtctgggaacgccagatccgcactgtccgaagcgttatgtcagcgatattgcacaagaatggctcccagttggatgacgagtctcttcgtacattcctgtgtgaagcagaggcaatagtaaacagtcgcccattaacggtgaatactctcagcgacccagactttcctgacccgcttacccccaatcacctcctgactttgaagactaaggtagtactccctacaccgagcatgttcaaatctgcagacctgtattcaagaaagcgatggaggagagtccagcatttggcgaatgaattttggtgtcactggagaaaggaatatctggcaagcctgcaacagaaaagcaagtggaacaacgctcgaaaagacctcgctgtcggagatatcgtcatggtgaaggacgactccctccccagaaattgctggcagctggcacgcgtctctcaagctaacatcagcaatgatggacacgtgcgcacagtccaagttaAAGTAGGAGATCCTTCCCTCTCAGCTAAAGGAAAGAGAAACTGA

Transcript

amic_s0058.g17.t1

GGCAGACATTTGAACATCGAAGAGCTATGCAGAGTAATGTGGGAAGACATCTGTGCATCGGAAAATAAGTGGGTAACACACACCTGCAAGACGGCGGGCTGCTCAGAAGGATACGTTACAGTTGATGGAAACGAATACTTAAAGAGATCGAAGTGCGCTCTTCCAATAGAGAAGGTGAAAATTCGGAAAGATTTGCCGCAAATATATAAATGTTGCCCGAGTTTGCCACTGCCCGGCGGAAAGAACCAAAAGCCATCTAAATTCTGTGCAACTCACCAGTCGCAGACTGCAGAAACATTAGCAGAAGAAGTTAATGTTCCGCCGGAATTTAATTCAGCCAGAGTGGAGGCGGGTCTGTTACCAGAAGATGAATGTGAAGCACACCAAAATGAAAAAGGGTGTAAAAAGAAAGAAAACATTTCGCTTTTCTTTCAAACAACAGCGGGTATGCTTGCTCTCATAAGGCCTTACGGCATTGTTGTAAGTATGACCGAAATGTTTACAAGTAAATCTTACACCCAGGTATTTCTGTTTATCCTTGGAACCTTTTGTGGCAATTTGGAGCATTTCAATAGACTCAGGTACTTAGGGTACGATAGGGCGTGTGGCTTGGTGCCTTTTTTAAAAAATCAGGCTCAAAATGGTAGTGCGGGAGCAAAGGTGCTATTGGATAACGTCCAATTTCTGGTAGACATTTTTCATGTATCCAAACACACTGAGGAAGTTTGTATGCCTCCTAAAAATCCGAACTGTCTTTATCACACGCATCTGCCAAAGTTTGATGAAATCAGGGGCGTGAATACTGAATCCTGCGAACAGGGATTTAAGAGATTGAATCAGTACTTTGAGCTTACTCGAAAGATGACTCAATTTAAGAGGAAAGTGTTGTTCTGGTTTGTCAACGAATGTTTTAATACTGACTTAGAGGCAGAGTTAAAACGGAAGAATTTTTTTTCGAAATTGCCTTCCTACTCAGGCGTTAAGTGGTGCCACCATGCCTTTGAAGTTAAGAAGAATTACGGACGAACAGTCACATTTCGAGATATCGTGAAGTTTGTTGAAACAGAAGCCGATCTTGCTACCGATCCGGTCTTCTCCCCAGACGCTCTTAAGGAAGAACGGAAGAAGGGCCCCGACAAGACCAAGATCTTTACTCATCGGAGACGACCACCAAATGCAAACAGCTCTACCACTTCTACTGCCCACTCTCAGAGGAACAACTACCCCGCTTCTGAGCCGAAGTCATCATCAAGGATGTGCCCTGTTTGTTCAAAGGCACCTACCCTTCACAACTGTGACGAATTTAGCAGGAAGAACCTTGAACAACGCCATAACTTGGTACAGTCGGCTGGTCTTTGCTTTGGTTGCCTCGGTAAAGGTCATTACTCCAAAGATTGCGGCAAGAGGTCGGCCTGTCATAAGTGTGGGAAGCCTCACCCGACAGTTCTGCACTATGATCCGAAAGACGACAAGGAGCTAGGGAATCAAGAGAAAATAGAAGTTCATGAGGATAGTGGTTCAAGCAACGTTTCGAGTGTCTGTCGCCATACAGTTGGTGACCGAGCAAACGTGACAAACTCGATGATTATTCCCGTGTGGTTACACCACAAGGACAATCCACAGAGAGAAATTTTAGTTTACGCCCTCCTAGATGATGCGAGTGACACGACATTCATCAAGTCTCAAACTCTTCGTGATCTTGGCTTATGCGGTCCAGAGATAAAATTGAACTTACACACGATGCTGGGAAAAGAAGAAATAACCGTCGAAAGGATGAACGATCTGGTGGTCAAGCGAGTCGACAAAAGAGTGGAAGTCGAGCTTCCCAAAACATATTCGAGGACAAAAATTCCTCACCGGAAGAAACAGATCCCTACACCAGACCCGAGAGAGGTCATCCTTGGAAAGGGGGACGATCCATATGCTGTTAGAACTCTGTTAGGATGGGGAATCATAGGACCAGTTACCCCGTATCCAGAAAGTCAAGACAAAGACGAAGAAGCCGTGTCTGCAACATGCAATACGATCATGTCTGgttgCgccaactttgcgttaaaagcggccGcAgatgataatgaagaGAATCTTGGTTGTGCAGCAGCTGAATTTGTCCGAAGGGACTTTTATGTAGATGATGGCTTAAAGTCCGTTGCATCAATACCCGACGCAATTGCCCTCATCGAAGATACCAAGGAACTGTGTAGAAGAGGAGGCTTTCGGTTGCACAAATTCACATCGAATTTCAAGGAAGTCATCGAAGCTATTCCGGTTGAAGATCGTGCTGAAGGTATCCAGAAGATTGATATGGATAGAGATGCACTCCCCATAGAACGTGCTCTGGGTGTGCAGTGGTGCATCGAGAAGGACTCCTTCCAGTTCAGGATCACCTTGAAGGATCGCCCGTGTACCAGACGTGGCATTCTATCAACAGTAAGCTCGATATATGATCCGTTGGGGTTTGCGGCGCCACTTCTTCTAAACGGAAAGAAGACTCTTCATGAACTGTGCAGAGGTCAAGTAGATTGGGATGACGAGGTTCCAGAAGACATCAAAGCAAGGTGGATGAAGTGGATAAGTGAATTACCTGCTCGACAAGAACTGCTGGTCCCTAGATGTTATAAGCCCACAGACTTTAGACGTATTGCTCGTGTGGAACTGCATCACTTCTCCGACGCAAGCACAAAATGGTATGGCCAGTGTTCGTATTTGAGGCTGAAGAACGAAAAGGACCAGTTCCACTGTTCATTCGTTATGGGAAAGGCAAGAGTTGCCCCACTCAAACCAGTAACAGTGCCTCGTCTAGAAATAACAGCAGCGGTGGTATCGGTAAAGACTAGTGCTCAATTGCAACAAGAGTATGAAGACGTGAAAgaggttttctggaccgacagtaaggttgttcttggctatatagccaacgaaaccaggagatttcacatcttcgtagcgaatcgggtccaacaaattcaagaacattcctctcctgatcaatggcggtacatagctcccaagagtaacccagctgatcacgcttctcggggtcttactccccaagggctttcagcatcgaactggatcacagggccagctttcctttggaatgatgagagcaaagaaggctgtcgtgctgtgtCTTACATAAGGAAACTCAGAGAAAGGATTGAGTGTAGAACCAGAGgaaagaatcatgtttcccacctcatcatcaaacgttgcctcgaagaagtggaacaccaagggaaaggcataacctggaccgaagtatgctcacgtggttattggcttgtgggtggatcaagtgtagtttcctcttacatttcaaagtgcatcaagtgtcttaagctaagaggtgtcgttaaggaccaaaagatgcctgacctaccaccagaccggttggaaccagcgcccccatttacttattgtgctgtggattactttggtccatggatcattaaagatggaagaaaagaattgaagaggtatggtgttctcttcacatgcatggtatcaagggccatacacctagaatgtgcaaactccatggatacagcctcattcattaatgcgctacgtcgcttcatctgccgcagaggtcccatacgccaaatgaaaattgaccaaggaagtaacttcattggtgcgaggcaagaactgaaggaagccttggctgagttggatcaccagcgaatcagtacagagctactcaaagtcaactgtgactggttcagctttagaatgaatgtgccttcagcaagtcatatgggtggggtctgggaacgccagatccgcactgtccgaagcgttatgtcagcgatattgcacaagaatggctcccagttggatgacgagtctcttcgtacattcctgtgtgaagcagaggcaatagtaaacagtcgcccattaacggtgaatactctcagcgacccagactttcctgacccgcttacccccaatcacctcctgactttgaagactaaggtagtactccctacaccgagcatgttcaaatctgcagacctgtattcaagaaagcgatggaggagagtccagcatttggcgaatgaattttggtgtcactggagaaaggaatatctggcaagcctgcaacagaaaagcaagtggaacaacgctcgaaaagacctcgctgtcggagatatcgtcatggtgaaggacgactccctccccagaaattgctggcagctggcacgcgtctctcaagctaacatcagcaatgatggacacgtgcgcacagtccaagttaAAGTAGGAGATCCTTCCCTCTCAGCTAAAGGAAAGAGAAACTGACCTGTAAGACTGTTGGACCGTCCCATCCAGAAGTTAATCTTGCTACTGCCAAGGGACGCAGTTAATGAATGAAGACCACGGTG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000000 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18701 all species →	DUF5641	Family of unknown function (DUF5641)	Domain	Interproscan
PF05380 all species →	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF18758 all species →	KDZ	Kyakuja-Dileera-Zisupton transposase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040676 all species →	Domain	Domain of unknown function DUF5641	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR008042 all species →	Family	Retrotransposon, Pao	Interproscan
IPR040521 all species →	Family	Kyakuja-Dileera-Zisupton transposase	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22955 all species →	RETROTRANSPOSON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0058.g17.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.