Gene detail

Detailed information of amic_s0058.g24.t1 in Acropora microphthalma

Genomic Location: sc0000058_pilon:1108171...1110985
NR annotation: XP_015777498.1, PREDICTED: uncharacterized protein LOC107355428 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0058.g24.t1

GGCACTTCAAAAGGAATAATCATATGGACACTGTACGATCATTCACTGTGTGACAGGATTGAAAGTGCTTGAATCACAGGCAATTGAATTTGCCAGTCTTATTTTGATCTTCTAAGACGATGTCAAACAGACTACCGAATCGCAAGACATCGGAAGAGATCGAGCGTAGCAATCCTTACGCGGACGTTGAAAAGATCAAGGATGATGGGAGCGAGGGGTGGCAAAGTCATATGCTACATGCTTTACAACAGAACGCAACTCCAGAGCCAATTTGCTTGGCATGCATGAAAAAGCTGCCTTCAAAACCTCCATTCTTTCAAGACGAGTTTCATGGTCGCATTCCCCGTGAAAAGGCGGAGGAACTACTGTCAGCAAATGGATTAGTTAACGGACGTTACTTGGTACGCGAAAGTAACAGTTGTCCGGGTGATTACAGCTTGTCATTAAGCTATGGTGGACGTGTTTTGCATTACAAGTTGAAGTATAAAAATGAGAGTTACTTTATCGATGAAAAAAAGTTTTACGCATCGATCACTGATCTTGTTGTGGATGTTCTGAGTATGTTTCGCGTAATTAAAGACGTCGATGGTCAGGTCCCGAAAGATGAGAAGAAAAAAGCGATTTCATGTCCCCATGAATTCAGACCTCATAGCTATAAACATTTCAAATGGTGTGAGTTTTGTGGCGGATTTTTGTGGGGAATCAGAGATCAAGGGATGAAGTGTGAAGGATGTGGCTTAGATGTGCATAGTCGTTGTATGAAGCACGTCGGAGAAGAGTGTAGTAAAAACCTTTCTTCCAAGGAACGGAGAATTGTTGTTCGGAAGAAATCCATCAGCACCAGCCCAATTAAGCAGTCAAGTATTTCAAGTGACACTTTCAGACCTAGCTGTGAGTATCAAGAGTGTTGTGTTCGATTTCTTGCATATCTAAATATTCCTTCTCGATATTTTGAGGTAGATGCGTTAAATCCTTGTTATTGCGAAGATTGTTGTGTGGATGTTGACACACCGTTATGCAAAAGTGGTGATCCACCTCAAATGTACTCACTGCCGACGGGATGGTGCCGCTTTCAGCTTGTACCTATTTCCAGTGCACCAGAAAGCAATGTTGTATCATCAACTTGGAATTTGGCATTCTTGTCACTAAAACCAGAGGAAGTAACAAGCATGTTGGAATCCAAATTTGCAGAAAACCAATCAGATGATATGAGTCAAGAAGGATACAAACCTCTCATCAAAATGACACCCTCCATAATATGTGCTGATTTGGACTCTCCTAAATTGAAGTACATTGATAGTGACAATGGTGTTAGCAAGGCAGGGCAAGTTGTGCTTCAAGCATACATCGAACCATACTCCTATCAAATGATGCGCAGACCAGGTTCAACTGATGAAATAGATCCTTATTTTAAAATGGACACCATATATTGGGTGACAAGGCAAGTTACTTCTATCATACCCTTTGCATTGCTAGTTAAAACTATGGATGCAACTTATTTGAAGTTGGAAAGAGACCTTTAAGGACCTCAACACATTAACTGGGTTTAATATCAGCAAACACAAAACATTGTTGATTGCAGATGTGTGACCAGAGGAATCAATGTTTGGTGTCTTGAACCATTTGCTTTCATGGAGTAATCATGTTGCATTTGCTTAAGAATTAGTCATAAAAAACAGGAAGAGGATAGCTCAGGCATGGAGTTGCATACAAATAATAATTTTTGTGGCAACCCCCCTGATAATAGGGGTGCATTGCCTCTAACCATATCACACCCCACGCGTCATCTTTTAAAATATAGGCAATACTCAAGTAACTGAGAAACTAGTATGAAGTAACTAAGCTTGCAAACCTTCACTTAATGTTTAGAGTTATTGTTTAAATAACTTACCCAACTTTCTCTTGGTCATTGCCAACTATTTTTTTTTTATTTTGGTATTTTAATGTTGTTTTACCTCTAACTGAAAAACAAATCATCTTGGGGTTTTGTTTGATTTGTTGATATAAATAGCTTTGCAATGTCCCTTcatgaatatatatatatagatttttacatgttaagagcctgatattgtttttattcatgagtttttaataccatattgtgaacgagtgagtcttcgagcgagtgagtgatatagtattaaaaacaagCCACCAAGTTAAAGTATTaagatcaagccacctagttgaagtacaagaaagcgttgataaaactgcaaagcaattattctcgccaaatttgacaccaagcgttagctaaaacataacgtgcaaccctattggtccaaccaaattattacaatctatttgactggacaattcaaagtcatgaagtgatatgatagcatttcactgcagtgaaatgataccatatgacttcacgggtatcatttttagtcacggctttatcacactgatatccacacattttatgtaataaaAATAGTTATTACGAATTAACCCCATCTGTAGTTGTTACTTGTATTACTCAAGCCCATGGCTTGTAGCTGGGAATGAATCCCTTAGGCCATTCTCTAGGACTTTGTTTGCTGCACATAACTGTATTTTCCTTGAAAAGTAATTGTTCAGTCTTATTTCTGTAAGGTATGATATTCCTACAAATAAGAGACTGCACCAATGGCAATCAGTCATAACTTTCCTTTTTTCCTTTGTAAATTATCTTATCTCTAAATGCAACCTTTGGCGTTCATATATTGATCTGGTATTTTTGTATCATACATTTTTTATTATATATATTTTTTAATTTAGTGATATGTGGAGAGGTCTAAGTGAACAAAAAGGGACTTAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P62993	Growth factor receptor-bound protein 2 OS=Homo sapiens OX=9606 GN=GRB2 PE=1 SV=1
Q60631	Growth factor receptor-bound protein 2 OS=Mus musculus OX=10090 GN=Grb2 PE=1 SV=1
Q5R4J7	Growth factor receptor-bound protein 2 OS=Pongo abelii OX=9601 GN=GRB2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008757 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00130 all species →	C1_1	Phorbol esters/diacylglycerol binding domain (C1 domain)	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR002219 all species →	Domain	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Interproscan
IPR051854 all species →	Family	Rho-type GTPase-activating protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46075 all species →	CHIMERIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0058.g24.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.