Gene detail

Detailed information of amic_s0059.g35.t1 in Acropora microphthalma

Genomic Location: sc0000059_pilon:594306...601469
NR annotation: XP_029189582.2, uncharacterized protein LOC114956590 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0059.g35.t1

CGGTGGAAGTGAACTTTCTCCTCAATTTGAGCTAAATTATGTCAGCTGTCGTCTTGTAGTCATTGAACACAAAGGATGAGGATGCCTTTTGTATCAAAGTACTTCTTGAAAAAGAAAGGGAAGGGACTGAAGCAACGTCTTCAAGGAAAATATAGAAAGCGTGAAAATACCACCGAAATTCTCGAAGAACGTTTAAAGAGATGTACTTCTACTCCTTGCATCAATGCTGTTTCAGATGTGGAATGTTCCGAATTATATTCTCCAGACTGCTCCACAGAAAATGCGGGAATTTTGATGGTTCCACAGGATCAAACTCCAAACAGCCATGTGCATGTTGACATGTCAGATACAAGTGATCAAATTTCACAAAGTTCTGAAAGTAGCAGAATGAATAATGTTTCTGAACTCTTGCACAAATTTCGGTTAAATAATTCAGAATCTTCATGCCAGGCATGCAATTTAAACCAGACTTCTTCTGAAGTTCAGAAAATGGGTTATCGCCATCCTCCACCTTATCCGGAACAAATGGAGCAAAATATTTCGATTCCATTGCAGAAATATAGGCATCCACCTCCTTATAGAGAGCCAGAGGATAGCATAGACAGTGGAAGATTTTATGGACAAGATGGTGGCAATTATAGTGCATTTTATAGCCTTGAGGAGAACTACCGGCATCCTCCTTCGTATGGACATGTGGGTGATCGCTTTTCTCTAGACAGCAGACTGGCTTATGGAGGGGCAAAGCCACCTAATGTTCCTAAAAAAGCTATGAGTGAGTCACTGATCTTTAATCATAATGGTTATAGCTACGCCCAGAATGTTTCAAGCAATGTGTCAGGCTTTTACAACGGCAAAGGCTTGTATAATGCAAATGGTTCTAGTCCTTTATCAGCAAATGCACCAGACTCACTGAGTTACAGTCTATCGTATGGTGACACCTACATCTCAGATGCATCATCATTTGGTTATGGATTTCATGCAGATTGGGGAACATCTACAAATAATTTACTTGGTGAGACCAGGAGTGACATGTTTAACAGTAAAGACCCTCCAAAAATGCCTGCTTTAGGACAAAACCCATCTGTTTATACTGCACAGACTCAGTCTCTCACAAATCGAAATGCATCATCTTTTTCCATGCAACAACCTTCAGTCCTTGGTGAGAGTTTTTTTCCAGCTGTTAAGAAGAATCTAGCCTTTAATGGGAGCCAACTTAATCGCTTGGATTTTTCTCTTCCACCTGGATTTGAAGTTGCATGGACACCATATGGGAGGAAGTACTACATAGATCATAACTCTGAAACCACAGACTGGTGCCATCCCCTTGAAAAAGCAGGTTTGCCGCATGGCTGGGAGAAAATTGAATCTCCTAATTTTGGAGTTTACTATGTCAATCACAACACTAAGATGACTCAGTATGAGCATCCAGCCAAGACTCAGTTCCTCCAACAACAACATCCACAGGAGATGCACCCATCTGAAAATGGATGTCAAGACTCACAAGCTATTCCAGCACAAAATCCTTTAGTTCCAGCCAGTCCGTACATTAGTGAAGAAATTCCAGAATGGCTGCAAGTTTATGCGAAAGCGTCTCCAGAGTATGACTGTTTTCTAAAGTGGGATTTGTTCAGATATGCAGAGTTGGACTGTTGGCAGACAATGCTGAAGAGGTTATACAAGAAAGAAGCTGAACAAGTAGTGATGCGACATGAAGAGTATAGACAAGCTCTGCAGAGAGAATTGGAACTGAAACAAAAACAGCAAGAAGAAGAGGAAGCTCTTGCAGATCTTGATGAATTAGATAAAGAACTTGCAAAGTACTAGCATTACTAATTTTAATCAGTTTTTCAGTGTATATAGAAATGCTTGAAATGAGATGTAATGCAATTTTGATGAATACTTGATTTCACAATGTGTCCCTTTCTCCTTTAGGGACAGTGTAATGCCATTCAGGTAAAACTCTAGTTGGGTGAAAATGTGAAAATATCAATGGAGAGAAAAAGTAATGCTAAATTAAGATACCTTTACAACACTTTGTTAGTCCACTCAGTATTACATTATCTGTCATCTAAAAGAAATAGCTAAGGATATTGAGGGTGGAAAAAGATTGAAAAATAATTATGGTGTCCAATTTCATACTCCTAAATCCCTCAGATTATAATGTCAATAGCTTTTACAAACCCGCGCTCCATCTGTTTCACTGCTCCATCCTCCATATTTACCCTACTGCAAAGTATGATCGTCTACCCCGTCAGTTTTTCATTGAGGAAAACGTTTTTCGTTCCTGGCAAAATCTATTTAAACTCCTCTTTTTGGGGTAAATTATGGCAGAGTTGCTGCTGATAGGCAATTTAGCTCTGACGATTGGGACAGTGGTACATTGCTTGTAAGCCTGCTTCTAAGTTATAATCTTCTGAATTAGGTGTCTGCAATCAAATTTATGCTTCTACGTCTTTTTGAATGTAATTCAATTTTTTAGAATTATAAGAAAAGCATAAGCTAAGACTTTTCACAAATCAATATTTATAGATCAATAAATTATTGCATTCAGTTAGTGCAAGTGAATTTATATGATGTCTCTTGCACTGATACCAGCATCAACAATATTATTTGAATCTGACAAATGAGGAATTGTATGATATTCATAGAAAAATGAATGTTAATATTGTAGTGCACAGTAGAGAGCACTAATAGACCAGCTATCAACAATGTTACCACAACAGTATTTTGTTTCATTTTGTTATGTGATGTGTTTCGTTGCGTTTAAGGCAGATTGTTCTAAGTTTTAACCTGAAAATGAAGAAAAGAAAGTGCTTAAAGCGAGTTATTAAACCCTGTGTTTGCATCAATACAAATGACAGCAGGCCTGTTGGTAATGAATGCAATGGTTTTTGTTAATTATTAATGGCTTGTTTTTGCATTAAAAAGATAAACATCAGACGGAAGGTATCTTTGCACGGGTGTTCATGGAACCTTTTTTCTAGATTATGAAAATGACAGCTGGCCTGTTGGTAATAAGGAAACAAGGTTTTAAGAAAACAATTTGTGAGTGGCAAAGATTGGCTGTTTGTCTTTTAAAAAAGTCTCAGTAAATAAGGTCTAGTGTTTTCAGGTTGAGGGAAAAGTAGGATCATGCAAGTATAAAGTCATGTTTACTATTATAATAAAAAAATTTAAATAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H4B6	Protein salvador homolog 1 OS=Homo sapiens OX=9606 GN=SAV1 PE=1 SV=2
Q8VEB2	Protein salvador homolog 1 OS=Mus musculus OX=10090 GN=Sav1 PE=1 SV=2
A4V8B4	Protein salvador homolog 1 OS=Rattus norvegicus OX=10116 GN=Sav1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007668 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan
IPR011524 all species →	Domain	SARAH domain	Interproscan
IPR030030 all species →	Family	Scaffold protein salvador	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47522 all species →	SALVADOR FAMILY WW DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006915 all species →	Biological Process	apoptotic process	Interproscan
GO:0008285 all species →	Biological Process	negative regulation of cell population proliferation	Interproscan
GO:0035329 all species →	Biological Process	hippo signaling	Interproscan
GO:0042127 all species →	Biological Process	regulation of cell population proliferation	Interproscan
GO:0043065 all species →	Biological Process	positive regulation of apoptotic process	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16686	SAV1, Sav; scaffold protein salvador	-	Apoptosis - fly	ko04214	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.