Gene detail

Detailed information of amic_s0059.g61.t1 in Acropora microphthalma

Genomic Location: sc0000059_pilon:1010413...1022155
NR annotation: XP_029189647.2, serine palmitoyltransferase 2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0059.g61.t1

AAGTTATGCTAAAGTTCAAGATGGCAGCGGGGACGTACACAACGAGGCGTCGGCGGGCCGATAAATCGCACAAAAATGGCCTTTCTAAGCTAAAGCATGGGTTATCAGCACTTCAGGAAGAAAAGCTCCAAGATTTCAAAGATTCTTTTGTAGAGGAATTCGAAGATACACCTTTCCAAGTGGCTGTGTTGACATATTTGTCATACTTTTTTTTGATTCTGTTCGGTTACTTACGTGACTTCATGCGAAAATATGGACTGGAAAGATCAAAAGCACCTAAGGAATCTGGAAACGAGGGTTTTGTCCCACTTTATGCAGACTTTGAAAGTTTCTACACAAGAAACCTTTACACAAGAATAAGAGACTGTTGGAACAGGCCAATTTGCAGTGTGCCTGGTGCTAATATTGAAGTTCTTGATAGAGCAACCAATGATTATGGATGGTCCTTCAGGCTGACTGGAAACACTACCAAGGCCCTAAATCTGGGTTCTTACAATTACCTTGGCTTCGCAGAAAATGTTGGGCCATGTGCTGAAGCTGCAAAAGAAGCAGTGAAGAACTATGGACTTGCTGGTTGCAGCACGAGGCATGAATATGGCACACTTAACCTTCACAATGAACTGGAAACACTTGTGGCTCGATTTGTTGGGAAGCCTGCAGCAATAGCCTTTGGTATGGGCTTTGCAACCAACTCTACCAACATCCCCACCCTGGTTAACAAGGGAGACTTGATAGTCAGTGATGAGCTGAATCATTCTTCTCTGGTGCTTGGTGCCCGATTGTCAGGAGCAAAAATTAAAGTTTTTAAACATAATGATATGAAAAGTCTTGAAAATATTCTCCGTGAATCAGTTGTGCAGGGTCAGCCTCGCAGCCACAGGCCTTGGAGAAAAATCCTTATCATTGTGGAGGGCATTTATAGTATGGAAGGCTCAATTGTAAGGCTTCCTGAAGTGGTGGCTCTCAAAAAGAAATACAAGGCGTACCTATTCCTGGACGAGGCCCACAGTATTGGTGCATTGGGTCCTAATGGAAGGGGTGTGACAGATTTCTTTGGGGTGGACCCTGCTGATGTTGACATCATGATGGGAACTTTTACCAAGAGTTTTGGAGCAGCGGGAGGTTACATTGCTGCAACTCGGGAAATAATTGACCATATTCGAGGAAGTTCCCATAGTGCAGCATATGCATCCTCCATGTCGCCACCAGTTGTCGTGCAAATTATTTCATCCATGAAAATGATCATGGGAGAAGATGGCACAGATAAAGGACAGAAAAGACTGAGAGCATTGGCAGAAAATTCAAAGTATTTTAGGCAAAGACTCAAAGACATGGGCTTCATTGTGTACGGTCATGATGCCTCGCCTGTGGTCCCGCTTCTTCTTTTTATGCCCGCCAAAATTGCTGCATTTGGTCGTGAAATGCTGAAGAGAAACATAGCTGTCGTTGTCGTTGGATTTCCAGCGACTCCTTTGATTGAGTCTCGCACAAGATTTTGTCTTTCAGCTGCACACACTCGTGAAATGCTCGATAAGGCACTTGATGCCATAGATGAAGTCGGCGATATCCTCCTGCTCAAATACTCCAGAGAACATCAAAGGAAGTAAATGAGCAATTCCCAGCAGCTCGAAGTCTTCGTAATAGCGTGACGTGAACAAGTCGCCATTGTGGTCGCTTTCTTGTTTTTCTTAGCATTTTTCAAAGCAATTTTTAGGCTAGTATAAATGGATTTTAACGGGATTGTTGTCGTAGGAAAGCCAGACGAGTTACTATGGCCAGTCACAAGAGATACATGAAAAACAAGAAAGCCAATGAGAAAGTAAAGCAAATACATCTGTGGGAAAAGGCCTGTGAGCCAGTCACAGCTGCTTTTTCTTTTGCCGCTGATTGGTTGGGAATTCAGCGCCAAACTTCTTAGCCAATCGTTCTTCGATGTAATAATAAAACTAAAGTAATTGTGGTTGCGCATAGAAACGTCGTCGTCAGATGTAAGCTAGGGCTTGCAATACCAGCATAGCACACACAGGACAACCAGGGTGAAAATGTTATTGTTATTCGTCTACTCCTCGGTTTCTTTATTTCAAAGTGACACTTATACCTTAGCGTAAGCAATTCTAGAGAAGGTGACCCCTTCAATAAGAATAGCATCGTAGCAACTCATTCTGTAACATACATACAAGTTCAcatatacaagcaaaaactaacgaaaaagagtccgacgtttcgccgacatcttggcgccattgtcaaggaaaactaaattagatatgcagtctcaagagtaactaagagATGTGTTTAGATGTTACATACAAGTTGGTATTTTATTTTACTTGATGAAACAGTTTCCGCTAGGAGTTATAGAAAGTTTCAATGACAGCTTCAATAGTTTATCTAAACAGTGTGGCCAGTTTATTTGCAGCCTTTGAATGTTGTTTTTCACATCATATATCACAACCGAGGCGTTGCAAAAAAATGAGCAATGTAATTCTATAGTATTAGTTGCATATTTCTTAAAACATTCTATTGTATTTACCAGGCAGGGGTTGCTCGTCAAAAGTGCTGTGCAATATATATGAATTTGTAAATTTTGAATTTCCCCTAAATATTTTTACCCTTTGTCTCATATGGACGTGGTAGGATACATAGTTAAGCCAAGTCCAATCTCCAGAAATCTGAATTTATTTACTTAAGCGAGGGGAAATTATTGATGTATAACATTAAAAAGGAAGATACAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3B7D2	Serine palmitoyltransferase 2 OS=Rattus norvegicus OX=10116 GN=Sptlc2 PE=1 SV=1
P97363	Serine palmitoyltransferase 2 OS=Mus musculus OX=10090 GN=Sptlc2 PE=1 SV=2
O54694	Serine palmitoyltransferase 2 OS=Cricetulus griseus OX=10029 GN=SPTLC2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001566 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR050087 all species →	Family	8-amino-7-oxononanoate synthase class-II	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan
IPR001917 all species →	Binding_site	Aminotransferase, class-II, pyridoxal-phosphate binding site	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13693 all species →	CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004758 all species →	Molecular Function	serine C-palmitoyltransferase activity	Interproscan
GO:0017059 all species →	Cellular Component	serine palmitoyltransferase complex	Interproscan
GO:0046512 all species →	Biological Process	sphingosine biosynthetic process	Interproscan
GO:0046513 all species →	Biological Process	ceramide biosynthetic process	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00654	SPT; serine palmitoyltransferase	EC:2.3.1.50	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.