Gene detail

Detailed information of amic_s0060.g31.t1 in Acropora microphthalma

Genomic Location: sc0000060_pilon:849216...873931
NR annotation: XP_015760956.1, PREDICTED: uncharacterized protein LOC107340119 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0060.g31.t1

ATGGAGAAATTTGTTCAACTTGGAGAAAAGTTTGGACTGGAAGGAGAAAAGCTGCTTGAATTCGTGCGTGAGCAAGAAGAAAAAGAAGAGAAACGTAGGCAGCTTGAAGAAGAAAAAGAAGAGAAACGTAGGCAGCTTGAAGAAGAAAAAGAAGAGAAACGTAGGCAGCTTGAAGAAGAAAAAGAAGAGAAACGTAGGCAGCTTGAAGAAGAAAAAGAAGAGAAGCGTAGGCAGCTTGAAGAAGAAAAAGAAGAGAAACGTAGGCAGCTTGAAGAAGAAAAAGAAGAGAAGCGTCGGAGATTTGAAGAAGAAAGAAGGCTAGAAGTAGaagagaaagaagaaagacgcagaagagaggacgaagaaagagaaacaaggcGacaagaacgagaattgaggaaattagaaatgGAGGCGGAACTCGTGAGACAGAAGGAGGCTGCTGAGGCCGCCAAGAGAGTGCACGAACTAGAACTTGCCCGTTTAGGACAAGGAAATTTGGATGATCGTCCTCGCGACAGAGAGGATCGAGCTAAAGCACCTAAACTCCCCTCGTTTGTGGATGGGAAGGATGATCTGGACGCATACCTGCAGAGGTTCGAGAGATTTGCGGAGACAGCTAAGTGGAATAAAATTGGGTGGGCATCAAAGCTAAGTGCTCTGTTGTCGGGACGAGCACTCGAAGTGTATTCACGTCTATCGGAGGAAGCAGCGAAAGATTATGACAAAGTGAAGATTGCGTTGATGAAGAGATATGATCTCACTGAAGACGGCTATCGTCGTAAGTTCAGAGCATCTAAACCCGAAGCTGATGAAAGCCCGGAACAATTTATTGTGCGACTGGACAGATACCTGCTACGGTGGTTAGAGCTCTCATATACTGACCAAACCTTTGGCGGTCTCAAGGACTTAATAGTGAAAGAACAGTTTATTGAGTCCTGTCCTAAAGATCTGGCCATTCACCTGCGAGAAAGGGCACCTGAAACCCTAGCAAAAATTGCGAAGATCGCTGACCAGTACTTGGAGGCTCATGGTAAACATTTGTTTAGCCCAGCGAGCAGAAAGCCAACAGTACAGCCTGAGAGGGACGAAGCCAAAAACATGCAGAGCAATCAAACAGCTCTCCATTGTTTTAAGTGCGACGCCCGAGGTCATAAAGCTGTCAACTGCCCAATCATAGCAAAGAGGTGTTTTCTGTGTGGCAAACAAGGACATGAAGCTAGAAACTGTCGTTTAGGTGGACAGAGATCAGGAGGACAAAGTAAGGATGGTAACCCCGTGCAGCGCGGTCAACAAGGAAAGTGCCCATCGCAAAGATTGATGTTGATACACCCTATCTCAAGGGCCAAGTGGAAGCGCAAGTGTCTACCCGATGCTGTTTATGACTTAAGTATTGGTAATGTGCCAAACGCTAGAGCTGCTGACGACCCAGACCCAGGCTGGCGAGATCATGTACAAGAAGCATGTGCTGTAACTACGAGAAGTCAAGCAAAGAAGGACGGAGAACGTATCCCGCTGATGGTACCAACTACCAATGAAAGTCCTGTGGTAGATAGAGAAAAGCTTAAACAAATGCAGCGTGATGACAAGAGTTTACAGAAATATTGGGAGAAAGACGATGTAGTTGTGAGAGGCCAGGCTGAGAACTTATTTGAAGTGAAAGGTGGAGTTTTGTACCGTGTCTACAAGCACCCTTATGTGAACGGAGGCAAACCTCTGAAGCAAGTTATGGTTCCTGTGCAGTTGAGAAACCGAATAATGGAACTAGCTCACGGATCGATTATGGGAGGTCACATGGGAATAAGGAAAACCGTTGATAAGATTCAGAGCGCATTCTATTGGCCAGAAGACATTGAAATATTTCACTCCAAAAAGATGACGAAAAAGCGACCACGATTCGTAATATCTCACCAGGGAGAAAAAACTAAAGAATTATCGGTGCGAAGACGAAATTTATGGCTTGCAAACATCAACCGCGATGCAGTGACGAAAGGCGAAATCAAAACTCCAGAGGTCTGCTCACGTCACTTTCATGAAGGAGAACCCGCCAAACTCTATAACGAATCTCATCCTGACTGGGCACCTACGATAGACATGGGACATAATTCAAGCACCATCAAGCAGACTTCCAAACCCTCTTCTCTAAAAAGGCATAAGCGTTGGGAGGATAGATCGGCAAGGCGTAGGCGATTGTGTTTAGAAGAGATTGAAGTCGATTGCAACGATAATCAGGAAAATACGAATCCTGCTTTGGTCCCCCAAAACGAACCTGAAATGGCAGAACTTTATCGTATTTTCGAAGAAACAGAGACAGAGGTGCCAGAGTAA

Transcript

amic_s0060.g31.t1

cgaacTcgtaacaTTGGGGGCCTGTCGCTGGAGAGTGGAATTCAAGGAACTGTTTGTTGTCTACCGTTAACCAGGAAAGGATCACAACTTGGAAGGAAGTAATTGTGCTGCGAAGGCGATTCGTACTAAGTGAAAGAGCCGTGGAATTTTAGCGCTGTGAAATGGAGAAATTTGTTCAACTTGGAGAAAAGTTTGGACTGGAAGGAGAAAAGCTGCTTGAATTCGTGCGTGAGCAAGAAGAAAAAGAAGAGAAACGTAGGCAGCTTGAAGAAGAAAAAGAAGAGAAACGTAGGCAGCTTGAAGAAGAAAAAGAAGAGAAACGTAGGCAGCTTGAAGAAGAAAAAGAAGAGAAACGTAGGCAGCTTGAAGAAGAAAAAGAAGAGAAGCGTAGGCAGCTTGAAGAAGAAAAAGAAGAGAAACGTAGGCAGCTTGAAGAAGAAAAAGAAGAGAAGCGTCGGAGATTTGAAGAAGAAAGAAGGCTAGAAGTAGaagagaaagaagaaagacgcagaagagaggacgaagaaagagaaacaaggcGacaagaacgagaattgaggaaattagaaatgGAGGCGGAACTCGTGAGACAGAAGGAGGCTGCTGAGGCCGCCAAGAGAGTGCACGAACTAGAACTTGCCCGTTTAGGACAAGGAAATTTGGATGATCGTCCTCGCGACAGAGAGGATCGAGCTAAAGCACCTAAACTCCCCTCGTTTGTGGATGGGAAGGATGATCTGGACGCATACCTGCAGAGGTTCGAGAGATTTGCGGAGACAGCTAAGTGGAATAAAATTGGGTGGGCATCAAAGCTAAGTGCTCTGTTGTCGGGACGAGCACTCGAAGTGTATTCACGTCTATCGGAGGAAGCAGCGAAAGATTATGACAAAGTGAAGATTGCGTTGATGAAGAGATATGATCTCACTGAAGACGGCTATCGTCGTAAGTTCAGAGCATCTAAACCCGAAGCTGATGAAAGCCCGGAACAATTTATTGTGCGACTGGACAGATACCTGCTACGGTGGTTAGAGCTCTCATATACTGACCAAACCTTTGGCGGTCTCAAGGACTTAATAGTGAAAGAACAGTTTATTGAGTCCTGTCCTAAAGATCTGGCCATTCACCTGCGAGAAAGGGCACCTGAAACCCTAGCAAAAATTGCGAAGATCGCTGACCAGTACTTGGAGGCTCATGGTAAACATTTGTTTAGCCCAGCGAGCAGAAAGCCAACAGTACAGCCTGAGAGGGACGAAGCCAAAAACATGCAGAGCAATCAAACAGCTCTCCATTGTTTTAAGTGCGACGCCCGAGGTCATAAAGCTGTCAACTGCCCAATCATAGCAAAGAGGTGTTTTCTGTGTGGCAAACAAGGACATGAAGCTAGAAACTGTCGTTTAGGTGGACAGAGATCAGGAGGACAAAGTAAGGATGGTAACCCCGTGCAGCGCGGTCAACAAGGAAAGTGCCCATCGCAAAGATTGATGTTGATACACCCTATCTCAAGGGCCAAGTGGAAGCGCAAGTGTCTACCCGATGCTGTTTATGACTTAAGTATTGGTAATGTGCCAAACGCTAGAGCTGCTGACGACCCAGACCCAGGCTGGCGAGATCATGTACAAGAAGCATGTGCTGTAACTACGAGAAGTCAAGCAAAGAAGGACGGAGAACGTATCCCGCTGATGGTACCAACTACCAATGAAAGTCCTGTGGTAGATAGAGAAAAGCTTAAACAAATGCAGCGTGATGACAAGAGTTTACAGAAATATTGGGAGAAAGACGATGTAGTTGTGAGAGGCCAGGCTGAGAACTTATTTGAAGTGAAAGGTGGAGTTTTGTACCGTGTCTACAAGCACCCTTATGTGAACGGAGGCAAACCTCTGAAGCAAGTTATGGTTCCTGTGCAGTTGAGAAACCGAATAATGGAACTAGCTCACGGATCGATTATGGGAGGTCACATGGGAATAAGGAAAACCGTTGATAAGATTCAGAGCGCATTCTATTGGCCAGAAGACATTGAAATATTTCACTCCAAAAAGATGACGAAAAAGCGACCACGATTCGTAATATCTCACCAGGGAGAAAAAACTAAAGAATTATCGGTGCGAAGACGAAATTTATGGCTTGCAAACATCAACCGCGATGCAGTGACGAAAGGCGAAATCAAAACTCCAGAGGTCTGCTCACGTCACTTTCATGAAGGAGAACCCGCCAAACTCTATAACGAATCTCATCCTGACTGGGCACCTACGATAGACATGGGACATAATTCAAGCACCATCAAGCAGACTTCCAAACCCTCTTCTCTAAAAAGGCATAAGCGTTGGGAGGATAGATCGGCAAGGCGTAGGCGATTGTGTTTAGAAGAGATTGAAGTCGATTGCAACGATAATCAGGAAAATACGAATCCTGCTTTGGTCCCCCAAAACGAACCTGAAATGGCAGAACTTTATCGTATTTTCGAAGAAACAGAGACAGAGGTGCCAGAGTAACCCTACTGCTTCTGTAATAGTGGAGTCTTGTGCTTTGTAGGGACACTTGATTTCCACACACCCAGTACCATGGCAACTGCAGTAGGATATGGCATCAGGACTAGCACCAAGATGTGGGTGTTCAGGGTTAATCACAAAACCGGGGTCCTTGATCTCGAAATCCTTGTGTTCATCTTGCATGACCTTAAAATAAAAGGAATTCCCCAAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF02023 all species →	SCAN	SCAN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR003309 all species →	Domain	SCAN domain	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR038269 all species →	Homologous_superfamily	SCAN domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46888 all species →	ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0060.g31.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.