Gene detail

Detailed information of amic_s0060.g8.t1 in Acropora microphthalma

Genomic Location: sc0000060_pilon:253836...284792
NR annotation: XP_044172180.1, leucine-rich repeats and immunoglobulin-like domains protein 3 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0060.g8.t1

ATGCCGCGATCAAACATGGCGTCCGTTAATATTGTCACTGCATGGATTGTGATGTGCTTGGTTTTATTCGGAGCAGCGTTACGAAAGGATCCGAACGCCAAAGCATGTGCTTTTGCTAAACCTTGCATCTGTTTCGGGACAAAAGTGGACTGCAAAAATCGGAGTCTTAGAATGATACCAGAGGGAATTCCACGGAATACAACCCATCTAGATCTGAGTGTTAATCAACTCACTACATTAGACATGACAAAGCTTTCAAGGCTTACAAAGCTACGAGTATTACTGCTTCATAAAAATCAACTCAGGGAAGTTCCGCCATGGCAGGCCTTGCCTTCATCTCTGCAACGCCTCTGGTTGCACCAGAACTTGATCTCAGTTGTACCTTCACAACGTCTTACAAAGAAAATGTCACTGGCAATGCTGTCACTGAACAACAATAATATCTCAGTTATTGAGCCTTATGCCTTTGCCAACCTGACATCCATCTGGTCCTTGAAGCTTGGCAGAAATAAACTTGAGGCCATTCCAGTTGCGGCGTTGAGCCAAGTCACTGGGTTAGAAATTTTAGATCTTACAAAGAATTCCATCAGAGAAATCCGTGTGCGCTTATCACAGAGTATCAAGTCTGTTAGCCATCTGAAACTTTCAAAGAATAAAATCTACAATATTTCTGCTTTTGCCTTTTGGGAAATGGAAAAGATGCAGGAACTGCATCTGGATAACAACAATTTGACATCAATTTCCAAAACATGGTTCTTTGGAGTTCCAATGCTTCGAACTCTTGATTTCGATAACAATCGGATCAGGGTGATTGAAGAAAGCAAAATGCCTGGCGTGAATTGGAAATTGGCTTTTCGTCTTCAGATCCTCATTCTTGCCAACAATGAATTTACGCACATTTATTCAACAACATTTGCCCATCTTAAATATCTGAGGACACTAATTTTGAATACAAACAGAATTCATCACCTAGCCGATGAAGCATTCTCTGATCTGTTATCCTTGCGAACTTTAGACCTTCGATACAATGCCTTACCATCAACAGCATTAGAGGGCGGTGTATTTGCTAACCTTAATAGCGTGTGGTTGGTGAGATTAGATGGCAATCGTATTACCCGAATATCTGCCAATTCCTTTCATGGTCTAACAAATGCAATTAGTATGAACCTATCTGCAAATGCCATCTCTTCTATTGATAGATTTGCCTTCTATGAAATGAGATCTCTTCAATATCTATATTTTGATACAGAAAAACTCATTTGCAATTGTGAGATCAAGTGGCTGCCAGTATGGCTTCGTGAGAAAAATATTCAAGATGACGTGCGTGGATTATGTTCATATCCCGAGAATGTCGCTGGTAGAAGCATTCTCAACATTTCTTTGTCAAACCTCGAGTGTGATAATAGTGGCTCCTCACCAGAGGTAATCAAACATCCACAAGGAAAGAAGGTCCTGTTAGGTCAGAATGTGACTCTAAGGTGTGTCGTGTCATGGAAGAATTACTCAATCACGGTGAACTGGACAAAGAACGGCAGGCCACTGAAAGGAGCTCACTTGAAAATACATACCCAGTCAAAGGATGATTATCGAGGAGCATACACAAGTGAACTGCATTTGACATCAGTTTCCAGAAGAGACAGCGGGAAATATCAATGTGTGGCGTATTCAACAGAGTTTGTACCAGTGCGATCTCATTGGGCACAACTCTCTGTGTTAGGTTTTCCGAAGCTAACGCAGACGCCCACAGACGTGGTAGTTGAGCCTGGCAAGACTTTCAAACTGTACTGCAAAGCACAAGGCCACCCAGTGCCCACCCTGCTTTGGCAGAAAGATGGCGGCAGGAGTTTTCCTGCGGCAGATGACAGAAGAATTAAATATGCCGAAGGCCTCGAAGTTTGTGAAATTCGGAACGCTCAGTACAACGATAGTGGAAAATACACTTGCTTTGCTAAAAATGTTGCTGGCTCTGCGAATGCCTCAGCCACTGTCACGGTGCTTGAGCCGCCTGGTTTCACCGGTTCTTGGCGAAAGAAGGTCACAGTTTCAGCGGGTGACAGTTTGGTCTTGGAATGTTACGTCAGGGGTGCACCTCAACCGCTTGTGATCTGGTATAAAGACCGAATCAAAATACAAATGAATGATCACGTGGTGCTAACAGAATCAAGACAACTGCTTGTGATCACCAAGGTAAAAGATGGTGACAGAGGCCGCTATGATTGTGAGGTGGCAAATTCCCAAGGGAATGATACACGCACCATGATGGTCGCCATAGAACCAGAAAAATGCACCGGCGTTGTGAAGAAATCCAACTCAAATAATTCAAACTACGTGAAGTATGACAAGAAGACCTTCTTAGGAATCATTGTTGTTGTGGTGGTGGCCTGTATTGTAGTCACATCTATGGTTTGGTTGTTTATTCAATACAATACTTTGTCGTGCGGTAAAAGAAGAGCACCACGCCGCTCACTACACACAGGGCCATTCGGAGTCGATTACTCTGACGAGTCCAACTCGAAAGCATTGAATCAGGAAATCAGCTACATTCCACTGAAGTTATCCAGTTCAAGCAGTACACAGACAAGCAGAGAATCCCCGCGGTCCACCGCAACATTCCTCACTGCTTCTGAGTCGGCTCAAGGGCGATGCGCTGTCGCTACTCTCGCCGGCTGCTCGTCGGAAAATGCTTCGGGTTCCGAAGAGAAATCTTCGGGAAATGATAACATTTCGTCGGAGAACTCGCTGAAAGAGAGTCGCAGTTCTTTGGCGTCTTTTTGTCGGTCAGAAAGTTCGTTACCATGTTGTCAAGAGGTAGTCACTTCTGCGCAAGTGCACGGCTCAGACAGTGACTCCGAAAAAAGTAGACCAACACTCGCGATGTTTGCGAGAAATACTTCGTGTAGTGATCACGATCCTGGAGAACACAAACTTACTTTTCCAGACTGTATACCATACAACAAAAAGACTTGTACAGACCACGAGAAATTCTCGTCTAAAGATGTCACACCGGATGTGTGCGTGACTTTTTATCCTCCAAGTGAAAAGGAGACATCTTGCGATACAGATGTTGTGGAATCAACATTAATAGTAACGTAG

Transcript

amic_s0060.g8.t1

CGCGTAAAATTTTACATGAAAACTCCTACGTACAGAAGGACGTAATTTATCTCCACGATCTACGCGCGTGCTCCTATTGCGTGTGAAGTTCATCGCAGCTGTTTGTACAAGCAAATGAAATTACGTTCCATGCACTCAATTGACATACCGCAGAGCAAAGAAAGGTTTTGATTCTGGGTGAATGTTGTGGAGGAGTGATTGCTGATCTTTCCAAAGTGAAGGAACGCTGTGCAAACTTTTACGAAGATGCCGCGATCAAACATGGCGTCCGTTAATATTGTCACTGCATGGATTGTGATGTGCTTGGTTTTATTCGGAGCAGCGTTACGAAAGGATCCGAACGCCAAAGCATGTGCTTTTGCTAAACCTTGCATCTGTTTCGGGACAAAAGTGGACTGCAAAAATCGGAGTCTTAGAATGATACCAGAGGGAATTCCACGGAATACAACCCATCTAGATCTGAGTGTTAATCAACTCACTACATTAGACATGACAAAGCTTTCAAGGCTTACAAAGCTACGAGTATTACTGCTTCATAAAAATCAACTCAGGGAAGTTCCGCCATGGCAGGCCTTGCCTTCATCTCTGCAACGCCTCTGGTTGCACCAGAACTTGATCTCAGTTGTACCTTCACAACGTCTTACAAAGAAAATGTCACTGGCAATGCTGTCACTGAACAACAATAATATCTCAGTTATTGAGCCTTATGCCTTTGCCAACCTGACATCCATCTGGTCCTTGAAGCTTGGCAGAAATAAACTTGAGGCCATTCCAGTTGCGGCGTTGAGCCAAGTCACTGGGTTAGAAATTTTAGATCTTACAAAGAATTCCATCAGAGAAATCCGTGTGCGCTTATCACAGAGTATCAAGTCTGTTAGCCATCTGAAACTTTCAAAGAATAAAATCTACAATATTTCTGCTTTTGCCTTTTGGGAAATGGAAAAGATGCAGGAACTGCATCTGGATAACAACAATTTGACATCAATTTCCAAAACATGGTTCTTTGGAGTTCCAATGCTTCGAACTCTTGATTTCGATAACAATCGGATCAGGGTGATTGAAGAAAGCAAAATGCCTGGCGTGAATTGGAAATTGGCTTTTCGTCTTCAGATCCTCATTCTTGCCAACAATGAATTTACGCACATTTATTCAACAACATTTGCCCATCTTAAATATCTGAGGACACTAATTTTGAATACAAACAGAATTCATCACCTAGCCGATGAAGCATTCTCTGATCTGTTATCCTTGCGAACTTTAGACCTTCGATACAATGCCTTACCATCAACAGCATTAGAGGGCGGTGTATTTGCTAACCTTAATAGCGTGTGGTTGGTGAGATTAGATGGCAATCGTATTACCCGAATATCTGCCAATTCCTTTCATGGTCTAACAAATGCAATTAGTATGAACCTATCTGCAAATGCCATCTCTTCTATTGATAGATTTGCCTTCTATGAAATGAGATCTCTTCAATATCTATATTTTGATACAGAAAAACTCATTTGCAATTGTGAGATCAAGTGGCTGCCAGTATGGCTTCGTGAGAAAAATATTCAAGATGACGTGCGTGGATTATGTTCATATCCCGAGAATGTCGCTGGTAGAAGCATTCTCAACATTTCTTTGTCAAACCTCGAGTGTGATAATAGTGGCTCCTCACCAGAGGTAATCAAACATCCACAAGGAAAGAAGGTCCTGTTAGGTCAGAATGTGACTCTAAGGTGTGTCGTGTCATGGAAGAATTACTCAATCACGGTGAACTGGACAAAGAACGGCAGGCCACTGAAAGGAGCTCACTTGAAAATACATACCCAGTCAAAGGATGATTATCGAGGAGCATACACAAGTGAACTGCATTTGACATCAGTTTCCAGAAGAGACAGCGGGAAATATCAATGTGTGGCGTATTCAACAGAGTTTGTACCAGTGCGATCTCATTGGGCACAACTCTCTGTGTTAGGTTTTCCGAAGCTAACGCAGACGCCCACAGACGTGGTAGTTGAGCCTGGCAAGACTTTCAAACTGTACTGCAAAGCACAAGGCCACCCAGTGCCCACCCTGCTTTGGCAGAAAGATGGCGGCAGGAGTTTTCCTGCGGCAGATGACAGAAGAATTAAATATGCCGAAGGCCTCGAAGTTTGTGAAATTCGGAACGCTCAGTACAACGATAGTGGAAAATACACTTGCTTTGCTAAAAATGTTGCTGGCTCTGCGAATGCCTCAGCCACTGTCACGGTGCTTGAGCCGCCTGGTTTCACCGGTTCTTGGCGAAAGAAGGTCACAGTTTCAGCGGGTGACAGTTTGGTCTTGGAATGTTACGTCAGGGGTGCACCTCAACCGCTTGTGATCTGGTATAAAGACCGAATCAAAATACAAATGAATGATCACGTGGTGCTAACAGAATCAAGACAACTGCTTGTGATCACCAAGGTAAAAGATGGTGACAGAGGCCGCTATGATTGTGAGGTGGCAAATTCCCAAGGGAATGATACACGCACCATGATGGTCGCCATAGAACCAGAAAAATGCACCGGCGTTGTGAAGAAATCCAACTCAAATAATTCAAACTACGTGAAGTATGACAAGAAGACCTTCTTAGGAATCATTGTTGTTGTGGTGGTGGCCTGTATTGTAGTCACATCTATGGTTTGGTTGTTTATTCAATACAATACTTTGTCGTGCGGTAAAAGAAGAGCACCACGCCGCTCACTACACACAGGGCCATTCGGAGTCGATTACTCTGACGAGTCCAACTCGAAAGCATTGAATCAGGAAATCAGCTACATTCCACTGAAGTTATCCAGTTCAAGCAGTACACAGACAAGCAGAGAATCCCCGCGGTCCACCGCAACATTCCTCACTGCTTCTGAGTCGGCTCAAGGGCGATGCGCTGTCGCTACTCTCGCCGGCTGCTCGTCGGAAAATGCTTCGGGTTCCGAAGAGAAATCTTCGGGAAATGATAACATTTCGTCGGAGAACTCGCTGAAAGAGAGTCGCAGTTCTTTGGCGTCTTTTTGTCGGTCAGAAAGTTCGTTACCATGTTGTCAAGAGGTAGTCACTTCTGCGCAAGTGCACGGCTCAGACAGTGACTCCGAAAAAAGTAGACCAACACTCGCGATGTTTGCGAGAAATACTTCGTGTAGTGATCACGATCCTGGAGAACACAAACTTACTTTTCCAGACTGTATACCATACAACAAAAAGACTTGTACAGACCACGAGAAATTCTCGTCTAAAGATGTCACACCGGATGTGTGCGTGACTTTTTATCCTCCAAGTGAAAAGGAGACATCTTGCGATACAGATGTTGTGGAATCAACATTAATAGTAACGTAGCAGAATTAGAAGTTAAATAGATATATGTTAAAATAGACCACCTCAATCCAACTTCCCAGCTTTCGGTTTGCGCAATGCGCACGCGGTCCAAATCACATTTTAGCTACTTCACCGTGAGCGTGACACCGTTCACCGGATGTGAGCCTAACCGGAAGTCATCTTCGTTCCCGAGAGGACTTTCATTTCGTGTTGATACGCAGAAAAAAAAGACTAGAAGAATGACAGAAAAATCAAATGAAGTACTTTTTTTCCTTTGAAAAAGAGGAAATTTAGAAGAGATCTCCGGATTTTTTGTGCAACACCGAGCGAACCCCGAAACAATATGAAATTGCGGTAACTTAAGTCTTCGCAGCAGAGGTGAGTAATAAAGTCGTACTAGTAATATATAAATTATGTATTTTGTAAATAAGACATTTTCAACTCGTCTACTCACCTCGAATATTTGCATTTTTGATTGAATTGTAGTTAATTATGATCCTGTGTTTCTGTGCGAATGAATTTGCTCCAGAACACAAGTACGAAAGGTACCACGCCTTCTGGGGAAACGGGTGGAACCTGGGAAAACATTTCACGTGTTTCGCCCTTTCCGTTGTTTACGTTACAGagacctctttcgcaatgacgacccaatatttaatattcatttatttcagaggcgataagccttcccaagctcactgccatgtgctaaattccaaaggaaattagaaagaggttttatttaaccttaatgcagaggaatgagccaccattcgtggaattggtctgtaTTTCACTAATTAATTTTTACACCATTATTACAGCGCTATTTTAAGGTTAAAGCTGGGAGCTAGGAATAGAACCCAGTTCACAGATTTCTTTGGCTTGGCTACGACCAGTTTTACAGTTATTTCCAGTTCGTCACTTTTTTGTTTCCGCAATTCCAACAGCGTTGATGTCACAATCGGTTTTCTCTCATCTACGGCGTCTTTTTGTATCTTTTATTAATTTAGTTTCTACTGATCACCGATTTACATGAACGTTTTAAAACAGGCTTCCCATAATTCTGAAACAACGCAGACACTGTCGTAAATGTTCATTAACAAACTACGCATAGTGTTATCAAATTAACTTAAACGGAAACCAATATTACAATAAAAAGAACGAAAAGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70193	Leucine-rich repeats and immunoglobulin-like domains protein 1 OS=Mus musculus OX=10090 GN=Lrig1 PE=1 SV=2
Q96JA1	Leucine-rich repeats and immunoglobulin-like domains protein 1 OS=Homo sapiens OX=9606 GN=LRIG1 PE=1 SV=2
O89026	Roundabout homolog 1 OS=Mus musculus OX=10090 GN=Robo1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005677 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF13855 all species →	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR000483 all species →	Domain	Cysteine-rich flanking region, C-terminal	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR000372 all species →	Domain	Leucine-rich repeat N-terminal domain	Interproscan
IPR050467 all species →	Family	Leucine-rich repeat and fibronectin type-III domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45842 all species →	SYNAPTIC ADHESION-LIKE MOLECULE SALM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24610	LRIG1_3; leucine-rich repeats and immunoglobulin-like domains protein 1/3	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.