Gene detail

Detailed information of amic_s0061.g27.t1 in Acropora microphthalma

Genomic Location: sc0000061_pilon:503594...511256
NR annotation: XP_015776007.1, PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0061.g27.t1

ATGGCGACTCATAATCCATTCAAACGCTTCTTTGAACAAGTGTACGAAAAGCTGGGTTGCTGTGAGAGTGAGAGTGAGAGTGAACTCCACCAAGCCGCCAAAGAGGGAAATATAGAAATGGTCGTAAAGTCCCTACAGGATCATCCATCAGAAATCAATTTGGAAGATGACACCGGTAACACACCGCTGTGCATAGCAACCAAAATGAGACACTTGGATGCAGTTCACATTTTGCTCCGTCACTCGGCGTCAATAAACAGCTCAGAAATAAATCCAATGCATCAAGTTCGCGACGCAAGTATTGCAAGGGCTTTGATTGAAGCTGGCGGTGACGTCCATGCCACCGATAACCAGGGAAACACTCCACTCCATAGAGCAGTTCTGGTCAAAGAGATATCGGTGATAAATGTTCTAATTGAACATGGCGCTAATGTAAATTTTCCAAATTCAAGAGGAGAAACTCCTTTGCATAATGCCTCTGAACCCATTGAGAAGGACTTAGATGTCATGAAAGCATTAATTTCATCGGGAGCATCGGTTAACATCAAAGACAACGCAAGAAAGGGACCACTTCACCACGCCTGCGAAATTCCTGTGATGAGCGAGCCTATAAAACTTCTGATACATCATGGAGCTCAAATGGACGCTCACGATCTGAAAGGCTACTGTCCGTTGCATTATCTTATCGACAGTTTTCCCTCTACCAATAATGAGGAAACGTTACTCGAGGTAATTGATTGCTTTCAGTTCAGAAGTGTTCAAGATGTAAATGTAACAACTGCAACTGGACAAACTGCTCTACATTTGGCAGCTTCCAGCGGCCTGCACCAGACAATCAGACACCTTATAAGCTGCGGATGCAATGTCCATTATCAAGATGGGCGTGGCAGAAATGCCTTGCACTTTGCTGTGGAAGAAAGAGAACATAGTATCAACACATTGGAGATTCTAGTCGCAGCTGGTGCCGACGTCCGCTCTTGCGATTGGTGGGGAATATCCCCTCTGCACGAAGCTGCAAGAAATAATAATGTCGCTGCGGTTGATTTTCTGATCGAAAACGGTGCACATGTTAATCAGCAAGACAAAAATGGCGCTATTGCACTTCACCTCGCAGTAACCTGTAATAGCCGTGAGATAGTTGAGCTTCTGATCAAGAAGGGTTCCTTAGTGAATGCAACAGACAAAAACTTGTCAACTCCCCTTCATTTTGCTGCATCAACGGACTCTAAAGATGTCGCAGAGGTATTATTAGACAAGGGTGCTGATGTAAGTATTAAAGATAGGTTAGGATCTTCTCCTCTGGAAACTGCAGTCCTCAACCGCTCAGAAAATGTTTTGCGTATTTTTACTGCAGACACAAAGTTCCATGGCATTCGTCCATTTTCAAATTTTGGCAACGTTCATTTATCAGAAGAAGACTTTACAAAGCTAGTCCTCTCATCAAGCAACAAAATAATGAGGTCAGAATCAGATATCCTGAAGTTTGTTGACAGGCTTTTGACTTCGCCAGGGGTTGGCCACGCTCTAGACTCAGACGAAGCTCAAGAAGTACATAGTGCTGTGGAATCAATGGCACAAGATGTTGTCAATAAGCTCGCTCATTTGGACCCAAGGTTTGCAACCACTTTGCTCAGAGCGGGAAGTTCTTCGGAAGGATCTAAAACAGCATTACCGAACGAGTTTGACTTTATGTTTAGTTTGGAGGAAATCAGTTTAAACATTCATCCCATTTTCTTTGAGGAAGATACGGCGCTTACCGTCGGAGTTCACACAAGTGGAAAAGATGGTAATACTATAGGGGAACGAATTCAAAACAAAGAACTATCAGAACACACTGGGGTTTTTTCTGATTACGTTCAAATAGTTTTAAATGAAGGCTATGAGGCGAGCCGCTTCCTAGACTTCTGTGACAGAACCTCGAAGGAAGTACCAAATGACGCAATGTACATTTATTTTAGTCAGATGCTGACCAACGTTTTGCTTAGTTCTTGCTTTCCCAAAAACCCTAACCTTTTTATAAAAGAAGTAACTATCGATCCTGCCATTATTTTAGAATGGAGAGGCTGCCGTTTCAAACTGCTGGAGATACATGTTGACGTTGTTCCAGCTATCAGGCTCCCACACTGGCCAGAGAAGACATATAGAAACCGCAGACTCTTTACGACTGACATTTTGACCATTCCTTGCCTTGCTGTGCCCAAATCGGGAAGTGTGTCTGACCAATTATGGCGTTGTTCTATGTCATTGCAAGAAACAGCAATATTTCGAAACCTTAGACCGTGTATTAGAAACAGCTATGTCGCTGCGAAGGCTATGGTTAATTCCAAAGCTGTCTGTCCATCTGTTGCTTGCAGAGACGACGAAGGTATAGAACTATTTCGCAACACATATTCCCTCTCCCCCGATGACGATGTTTATGTTACAAAATCAGCTGAAGATGTCGTACCTTCGTACATGCTGAAAATGATGTTTCTCTTCGCATTAGAAGACAAAGTGGCGTCAGAGGGACTGCAATCTGTATTTGAGACTGTTGGGGAAGAAAGAAAGCCAGCATTATCCAAAGCGGCAAACTACGGACCTGCTGAGCAAAGGAATATTTTCAGGCGGTTTCCAGAGGTTGATGTAGACCTTGTGAAAGACATATTTCGTCGATGTGAAAGCTGTCTTTTGGATGGATCGGTGCCGTCGTTTTTTAACCCAAAACAAAACGTCATCGAGAAAAAGGAAGACGGAGAAGTAAAATTGATTCTTTCCTTTGTGCAATTCATCAATAAGCTTCTGGCTTGA

Transcript

amic_s0061.g27.t1

GTAACATTTTAAAACAGCTTGATTGATGAAAGCTCTGTTTCTTTGCATATTGGTAGTTTTTATGCAGCACACTGGAATACATAATTTCTAGGCTTTTCCTTTTTGCTTACATCTCTTCGCTCTCTACAGGGCAGTGACACTGTAAGGACTGATGGCGACTCATAATCCATTCAAACGCTTCTTTGAACAAGTGTACGAAAAGCTGGGTTGCTGTGAGAGTGAGAGTGAGAGTGAACTCCACCAAGCCGCCAAAGAGGGAAATATAGAAATGGTCGTAAAGTCCCTACAGGATCATCCATCAGAAATCAATTTGGAAGATGACACCGGTAACACACCGCTGTGCATAGCAACCAAAATGAGACACTTGGATGCAGTTCACATTTTGCTCCGTCACTCGGCGTCAATAAACAGCTCAGAAATAAATCCAATGCATCAAGTTCGCGACGCAAGTATTGCAAGGGCTTTGATTGAAGCTGGCGGTGACGTCCATGCCACCGATAACCAGGGAAACACTCCACTCCATAGAGCAGTTCTGGTCAAAGAGATATCGGTGATAAATGTTCTAATTGAACATGGCGCTAATGTAAATTTTCCAAATTCAAGAGGAGAAACTCCTTTGCATAATGCCTCTGAACCCATTGAGAAGGACTTAGATGTCATGAAAGCATTAATTTCATCGGGAGCATCGGTTAACATCAAAGACAACGCAAGAAAGGGACCACTTCACCACGCCTGCGAAATTCCTGTGATGAGCGAGCCTATAAAACTTCTGATACATCATGGAGCTCAAATGGACGCTCACGATCTGAAAGGCTACTGTCCGTTGCATTATCTTATCGACAGTTTTCCCTCTACCAATAATGAGGAAACGTTACTCGAGGTAATTGATTGCTTTCAGTTCAGAAGTGTTCAAGATGTAAATGTAACAACTGCAACTGGACAAACTGCTCTACATTTGGCAGCTTCCAGCGGCCTGCACCAGACAATCAGACACCTTATAAGCTGCGGATGCAATGTCCATTATCAAGATGGGCGTGGCAGAAATGCCTTGCACTTTGCTGTGGAAGAAAGAGAACATAGTATCAACACATTGGAGATTCTAGTCGCAGCTGGTGCCGACGTCCGCTCTTGCGATTGGTGGGGAATATCCCCTCTGCACGAAGCTGCAAGAAATAATAATGTCGCTGCGGTTGATTTTCTGATCGAAAACGGTGCACATGTTAATCAGCAAGACAAAAATGGCGCTATTGCACTTCACCTCGCAGTAACCTGTAATAGCCGTGAGATAGTTGAGCTTCTGATCAAGAAGGGTTCCTTAGTGAATGCAACAGACAAAAACTTGTCAACTCCCCTTCATTTTGCTGCATCAACGGACTCTAAAGATGTCGCAGAGGTATTATTAGACAAGGGTGCTGATGTAAGTATTAAAGATAGGTTAGGATCTTCTCCTCTGGAAACTGCAGTCCTCAACCGCTCAGAAAATGTTTTGCGTATTTTTACTGCAGACACAAAGTTCCATGGCATTCGTCCATTTTCAAATTTTGGCAACGTTCATTTATCAGAAGAAGACTTTACAAAGCTAGTCCTCTCATCAAGCAACAAAATAATGAGGTCAGAATCAGATATCCTGAAGTTTGTTGACAGGCTTTTGACTTCGCCAGGGGTTGGCCACGCTCTAGACTCAGACGAAGCTCAAGAAGTACATAGTGCTGTGGAATCAATGGCACAAGATGTTGTCAATAAGCTCGCTCATTTGGACCCAAGGTTTGCAACCACTTTGCTCAGAGCGGGAAGTTCTTCGGAAGGATCTAAAACAGCATTACCGAACGAGTTTGACTTTATGTTTAGTTTGGAGGAAATCAGTTTAAACATTCATCCCATTTTCTTTGAGGAAGATACGGCGCTTACCGTCGGAGTTCACACAAGTGGAAAAGATGGTAATACTATAGGGGAACGAATTCAAAACAAAGAACTATCAGAACACACTGGGGTTTTTTCTGATTACGTTCAAATAGTTTTAAATGAAGGCTATGAGGCGAGCCGCTTCCTAGACTTCTGTGACAGAACCTCGAAGGAAGTACCAAATGACGCAATGTACATTTATTTTAGTCAGATGCTGACCAACGTTTTGCTTAGTTCTTGCTTTCCCAAAAACCCTAACCTTTTTATAAAAGAAGTAACTATCGATCCTGCCATTATTTTAGAATGGAGAGGCTGCCGTTTCAAACTGCTGGAGATACATGTTGACGTTGTTCCAGCTATCAGGCTCCCACACTGGCCAGAGAAGACATATAGAAACCGCAGACTCTTTACGACTGACATTTTGACCATTCCTTGCCTTGCTGTGCCCAAATCGGGAAGTGTGTCTGACCAATTATGGCGTTGTTCTATGTCATTGCAAGAAACAGCAATATTTCGAAACCTTAGACCGTGTATTAGAAACAGCTATGTCGCTGCGAAGGCTATGGTTAATTCCAAAGCTGTCTGTCCATCTGTTGCTTGCAGAGACGACGAAGGTATAGAACTATTTCGCAACACATATTCCCTCTCCCCCGATGACGATGTTTATGTTACAAAATCAGCTGAAGATGTCGTACCTTCGTACATGCTGAAAATGATGTTTCTCTTCGCATTAGAAGACAAAGTGGCGTCAGAGGGACTGCAATCTGTATTTGAGACTGTTGGGGAAGAAAGAAAGCCAGCATTATCCAAAGCGGCAAACTACGGACCTGCTGAGCAAAGGAATATTTTCAGGCGGTTTCCAGAGGTTGATGTAGACCTTGTGAAAGACATATTTCGTCGATGTGAAAGCTGTCTTTTGGATGGATCGGTGCCGTCGTTTTTTAACCCAAAACAAAACGTCATCGAGAAAAAGGAAGACGGAGAAGTAAAATTGATTCTTTCCTTTGTGCAATTCATCAATAAGCTTCTGGCTTGATTGGTTATGTTGCGCCAAGTTTCAGATGTTGTCTTCGTAAGACGGCATAGAAAATGAAAAGAAAAAAAAGGC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010036 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF03281 all species →	Mab-21	Mab-21 protein nucleotidyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR024810 all species →	Family	MAB21L/Cyclic GMP-AMP synthase-like receptor	Interproscan
IPR046903 all species →	Domain	Mab-21-like, nucleotidyltransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24141 all species →	2-5A-DEPENDENT RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0061.g27.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.