Gene detail

Detailed information of amic_s0062.g13.t1 in Acropora microphthalma

Genomic Location: sc0000062_pilon:190686...200802
NR annotation: XP_044167636.1, guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0062.g13.t1

CCTCCGAGCTTTGCAGGGTCTCCGCCTTCGTTTGCAATCCGCCGAAAGGGAACCACTCCCAGCGATAGTTGTCCGAGATTCTCCCGCATGTTTCAGAAGAAGCTGTTGAAGAAAGGACATTAGTTCGCGCGGTTTTATCAGTTGATGCGGTAGCTGGGCTTGCTGCAGTGTTGATTTTGTGGTGTTTATCCGGACTGGAAGAGGCAGCAGGCGTTTTCGGGCGACTGTGGCCATCAGCCTTGTAAATTTCAGCGCAAGTTTGAGAAGCAAATCAGCACACAAATATGCAACAAAGCCAAAGCCACGGGCAAAACGAAATCGAAGCGTTAAGGCAAGAGGCCGAAATACTCAAGGCTCAGATCCGGGATGCAAGGAAGGCAGTCTGTGATACATCATTGTCACAAGTTACCCAAAATATCGAACCAGTGGGAAGAATACAAATGAGAACCAGGAGAACACTCCGTGGACACTTGGCTAAGATATATGCAATGCACTGGGCTACAGATTCGAGGAATTTAGTAAGTGCTTCTCAAGATGGAAAACTAATTGTATGGGATTCTTACACAACGAACAAGGTTCACGCAATCCCGCTTCGATCTAGCTGGGTAATGACATGTGCATATGCACCATCTGGAAACTATGTTGCATGTGGTGGACTGGACAATATATGCTCAATTTATAGTCTAAAAACACGAGAAGGAAATGTCAGGGTCAGCAGAGAATTACCAGGACACACAGGCTACTTGTCATGTTGTCGCTTCACAGACGACAATCAAATTCTCACCAGTTCAGGAGATATGACTTGTGCTCTTTGGGACATTGAAACTGGACAGCAGACCACAACATTCGCTGGCCACACAGGGGATGTGATGAGCTTATCATTATCTCCTGACAGCAAGTCTTTTGTCTCAGGGGCTTGTGATGCATCAGCAAAGCTATGGAGCATACATGATGGCATTTGTAAACAAACATTCACTGGACATGAGTCAGATATTAATGCAGTAGTGTATTTTCCCAATGGTTCTGCATTTGCTACAGGCTCTGATGATGCAACCTGTCGGTTGTTTGACATCCGCGCTGATCAAGAACTCATGGTTTATGCGCACGACAACATCATCTGTGGAATAACGTCAGTAGCTTTCTCAAAGAGTGGCCGTCTGCTATTGGCGGGCTATGATGATTTTAACTGTAATGTGTGGGACACATTGAAGGGCGATCGTGCAGGTGTCCTTGCTGGTCACGACAATCGGGTCAGCTGTCTGGGTGTCACTGAAGATGGCATGGCAGTGGCCACTGGAAGTTGGGATAGTTTCTTGAAGATCTGGAACTGAACATCTCTGTATGATCATCTTTTTCCCCTTAGAGAAAAGTTTTAGTGTTTATATTTTATATATTGCAATTTAAGTTGTGGTGCTGATTGCACCCGGCAGGGTGTACACACTTGTGTTCGTTTACTCCATCAACTGAGTCAGTGTGTTTTCATCTTCTACTATGAAGACAAAAGTACTAGGAATACCCCTCTTACATTTACCAAAACGACATTCAGGCCACACTGTATTGCAAAAACTGCCTTATCTAGATTTGTGCCTTCAAATGTTGTGCATTGTAATGAAAATCGAGAATGTAAAAAGAAAGAATCTAAAAAATTGCTCCCTATCTAACTAGTAGATTTTACCGTACCATTTAGAATTTGAAAGCAAATTGTCGTGTGATTTATGTTTTGAGTTGATTCCAGTAAAAATTTCTTGGCAGAAATAAAGGTTCTAAGAATATTACAGCACAATGAAGAAAGGTTTCTGCCCATTTAAACTGTTAATGAGCAAGAGTTATCCTTTTTCTGTTCTTTGTATTTGTTCTCCTGCAGTTTTCTGTAATTGTGAATATTATAGTAATATTGACATAATAATAATTGTGATAAAATGATGCGAAGTATATAAAAATGAACTCCTACTCAGCAGACTGGCTTTAGGATTGAATTTGGGTAGATTGTCAGTGATCGCAAACTCTCCTCACAGTCCATCCTTTTTTCATTAATTTTAAATGTAATGCATTTTTAGTTATCATCAGTTTGCTATCCAAGATTTCAATGAACGTTAAAGAAAGCTGACACTCAAATGACAGTGGAATATCTTGTTCAATCTTGTCCATTCTTGCAAGACTTATAACAGTCTTCAAGATGTGAATTAGGAATTTGACCCTTTAACTGTGCATGTTTGACTGACAGGTGAAGTTTCAATTGAATTTGCATTAGATTCTCATCAGGGTTGAACAGAATTCTCCCAGTTCAACATTTCAAGCTTTAGGTCTGCAGTCGTATAGTAGTAGCTAAGCAATAATTGATAGGGTTTGTAACTGTAAGAGCAGGTAGAGAAAGCTGTAATTTCTGTCTGGAGCCGACTTTGCATTGCATTGTGAAATGTGAGACAATAAAAATCTATTCATCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PH57	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Danio rerio OX=7955 GN=gnb1 PE=2 SV=1
P79959	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Xenopus laevis OX=8355 GN=gnb1 PE=2 SV=1
P62871	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Bos taurus OX=9913 GN=GNB1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002312 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR016346 all species →	Family	Guanine nucleotide-binding protein, beta subunit	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001632 all species →	Domain	G-protein, beta subunit	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19850 all species →	GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005834 all species →	Cellular Component	heterotrimeric G-protein complex	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0030159 all species →	Molecular Function	signaling receptor complex adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0062.g13.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.