Gene detail

Detailed information of amic_s0062.g23.t1 in Acropora microphthalma

Genomic Location: sc0000062_pilon:319896...328602
NR annotation: XP_015759571.1, PREDICTED: caspase-8-like isoform X2 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0062.g23.t1

CTTCTTACTTACTCAAGATGAAGATCCACGCTGTCGTGATTTCATTGTCGAAGGCTCATCATCAGAATCATACTTCCAAAGTTTATTGTTTGAGATTGAAACATCAGGGAAATCTAGAGGAAGCTCGTCCATGCGGGCATCCCTTTCGGTTGCACGCAGAGGGAAACAGGTTTATCATCAGAAACGATTTTCTTAGAGATGAAGCCATCGACGTGGGCAAAGTAATCATTGTTGTCCTCTCGAGCAATGGATGTCGTTACCTCAGTAACACCGGCTATCACTTGAGTATTCCTAGAATAATGCAAGGCATAAGGTTTGATAACCTCCAAAGTGCTGTGGCCTATAGGGGGATTAAGGAAGCTCCCTTATGCTACCATATACAATAGTTCAATTGGCCAGAATTCTCCTGGTCCCAATCAGAAACATGCGCTAGTTAGTGTGCATGAGATATCATTAAAGGATAACAATTTGGAAGCAGTAACCCGCTTGAGGGAGAGAATAAGTATAAATAATAGAAGCAGGAATGACTTTCAGAACAGCAGTATTCAAGAAACGAAATTGTCTATCAGGAAGCCAATGTCGGAGGAGGATGTTGGTGATTTAATCCTCATATCATTTGATTCAGATGGACAAAGCCCTTACTGGGGAACATGTGCAGGAATTCTCTTGAGTGGAGTATCAACAGAGCCTAAGCACTATAAGATGCACAGCTGTCCTTGTGGACATTGTTTGATAATAAATAACATGTCCTTTGATGATGAGGAGCTAAATCGTCAATGTGCTATACAGTACATGATGAGCAGCACCTCCAAGCCCTTTTTGAGAATGATCTACATTTTCTGGTGCACATAGTAAATGACTTGCAAAACTTCCAGATGGAGGACATCTGTACAGAATATAGCAAGAAAGACCATAGCAAGTTTGATGCTTTTGTTTGTATCGTCATGTCCCATGGGGATATTGGTGACAAGATCATTGGCGTAAAGGGAAGAACAATCGGCATTGAACAGCTAATGTCTAAATTCACAGCAAAGAGATGCCCCTCTCTAGCTAACAAACCCAAGGTGTTCTTCATTCAAGCCTGCAGAGGTTCTGCAGAAGATGAGTTTTTTACTCAAAGCAAAGATCACAAAGACTATGTTGCAGGGTTAACTTGTGACTCTACCCTTGCAAGATGCATTTCAAGTTGTCTACAACAGAGTGATTTTCTCCTGGGATTTGCAACTGTTCCAGGATATGTTGCATACAAACAGACCAATTATGGGTCGTTTTACATGCAAGCCTTGACAGATATCATCAAAAGTAATCATAGAAGATACCATTTGGAAGAAATGCTTGTCGAGGTCAATAACAGCGTTTCTGACAAGTGTAACCAGGTGCCAGCAAAACACAGCACTTTGAGAGGGAAAGTGTTTTTGTGATGTGTAGACATCATCATCAAAGAGACATTCAAAGCAAAGAAGATATTTGAATCACAGGAATTTTATTGGTAACATGTCAAAGTTAAATTTTAATACTTCAGCCAAGCGAAGATTAATTAGACCTTAATTAACTTTCAAATTATGCACTATACAAAAATTCAATATTGTTGAATGGAGTTTGGATTAGGGTCTTTCTATTTGTTCTGCATCCATTCTCCTTGTGGCTTGAATTGGAGGACTTCAATTAATAAGCATGGATCATTCTGGGCTCTGACCTTTATCTTGCCACTTGCTCAGTCTTTTGGTGATACAATGTTTAACTTGGCTTCATTGTCTGCCATGTTTGAAAACACAAAATTAATGTAAATCTGAATTACCTTTTGCACTTGAACATGGCAAATTGACCAAGTGCAAGTACCATGAAAATTAATGGTGTAGGACCAAATACTGTATTTTAAGTTGATACAACATCTTGCAGTAAATCACTGCAATCCAGGTTAGTGCGCAACAGTGTTGCAACTTTTTTGTGAGCATTGATAAGGCATTAACGATAAATTAGTGAAATACTAGACGATTGATTAATTGTTAAAGCCAGGGAGATTATACAAGTAAAAAATAACCAAAAACAGACCTACACTAGATTAGACATTTTAAACTTACAGTAGATTCAAGTTGTATTTCTTCTTGTGAAATTCGTTCTCAGATATGAGTTTTTTTGTGCAAGGGTACTTTCAGTAGAGAATTGAAGTTGTTAGTAGGGTAATAGACTGGTAATAATATTGTTATTTCACTGGTTATTTCATGACCATAAATATTTTACACTAGCTGTATACACTGATAAGTAGAAGTATTTGGATTTTTGGACACGTTTTTAAAATTGAAGAGGAGAATGAATCATGTGGGAGCTCAGGTTAAAATCAGTACCTTTCTTTGTTTAAATATAAATCAGGTCATTGTGAATGATACTGGAAGCCCAATAAAATAATAATATTCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JHX4	Caspase-8 OS=Rattus norvegicus OX=10116 GN=Casp8 PE=1 SV=1
Q14790	Caspase-8 OS=Homo sapiens OX=9606 GN=CASP8 PE=1 SV=1
Q08DY9	Caspase-3 OS=Bos taurus OX=9913 GN=CASP3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000405 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00656 all species →	Peptidase_C14	Caspase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001309 all species →	Domain	Peptidase C14, p20 domain	Interproscan
IPR015917 all species →	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR011600 all species →	Domain	Peptidase C14, caspase domain	Interproscan
IPR029030 all species →	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR002138 all species →	Domain	Peptidase C14, caspase non-catalytic subunit p10	Interproscan
IPR051290 all species →	Family	CASP8 and FADD-like apoptosis regulator	Interproscan
IPR033139 all species →	Active_site	Peptidase family C14A, cysteine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48169 all species →	DED DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0062.g23.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.