Gene detail

Detailed information of amic_s0062.g42.t1 in Acropora microphthalma

Genomic Location: sc0000062_pilon:790717...799687
NR annotation: XP_029207106.2, uncharacterized protein LOC114970800 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0062.g42.t1

ATGAGAAAGGTGAAATGCGTGTTGGTGGGCGACGAAAATGTCGACAAGCGAGAACTTTTCATCAAATATGTCGCCATGATGAATGCTGAATGCGAATCAGCAACTGAAGACGTGGAAACGACGTCAAACGCAGGGAGAACAAACCAAGGTCAATTGAACGATGCATTTAAAAATGGAGATAAAAAAGGCAGTAAAAGAAGCACGATGCGAGGTAGTTACGTGCCATCACATCCGAACTTCCGGGTCATTCATAGCAGGGATGAGAGAGGCAGCGTGACGAGTTCAGAGTCACCCGAGGAAGCTATCGACATTTGGTCTGGCAGCGTTACCATTGATGGACGTCAGTTTTTCGTAGATGTGCGTGACGCTCCCTGTAACGCAGCTTTTGATAACATCAGACGAGACAATTACCCGGATACGGACGTTTTCCTTGTTTGTTTTTCCGTTGTTCGTTTGTTGTCGTGGGAGAACGTTTTGAAAAAATGGATACCAGAAATTCAAAAGATCTGCCCCATAACTCCGTTTATTTTAGTCGGAACGCAAACAGAATGGCGCGAACTCTGGGACGAAAGAGATCCTTCCAGAAGACCGATTAATACTGTAATGGGAGAGTCTTTTGCCCATCAGGTCGGTGGTGTAAAGTACATGGAGTGTTCCACTAGTGATAATGAAATTAGGACAATTTTTGATACCGCTGTGCGCGTGAGTACGATGGATCGTATGAAACTCTCCACGTATTCGCCCGAATTTGAAACAGATGGAAGCACTTTGCTTCACCGCGCTGCTAAACTCAATCATATCCCATCTCTGGAAATCCTCGTGGATACAATCGACCTGACAGTCAAGGACAAACACTTTCTTACTGCCTTAGACGTCGCGCTGAAAGACGACAACTTGAACGCAACGCGCTTCCTCATTGAGAGCGGCTGCGAGATGCTCGCTCCTCCAGAACGCTGGAGGAAAGTGTGCGAATTCTGGATCGATGATAGCGCTGACTCTGAGCAAGTTGTGAATAGCGACATTACCGAGTTCACAAGACAGTTAACGTTCTTTTATACTTCCGCTTCGTTTCGCCCGCTAGGAAGAATCCTTTTGATTGGACAAAATGGTACAGACGTTGCCAAATTTGTCAACGAAACTGTCCCTATGCTTCCTGTGCGATCTTTGACCATAGTCAATGCTGAAGGACCGACGTTGTTTGATTTCTCGCAAGTGCAATCCTGCTTGGAATCTCTTACAATTACGAACTGCGATTTCGGCTCGCCGGAGTTACCTGGAACTGTGTATTCAGTGAAAAGTCTGAAGAGCTTGTGCGTCGTTAAGTCTGGCTTGTCGCGCTTGTCGGAACAACTCGGAGAGTTGAATGGCTTGCAGCGTTTGCGCCTTAGCTCAAACAAGCTACGGAGACTTCCCCACACCATTTCCAGACTGCAAAAGCTGAAGTTTGCTCATTGTGATCGAAACTTGCTGGATAATCTGCCCGATACTCTAGGATGCTTGGCCTCTCTGGAAACGTTGGACTTGAGTTATAACAAGCTGGAAAAGATGTCCCCATCCCTGGGCTTGTTGAGCAATTTGCGGAATCTTTGGTTCACGAGAAATCGCTTGAAATTTCCGCCCAATCACATTCTTAACAAAGAAACTGATTGCATTTTGGAATATCTCAGTGATTTCTTGGACGATCCTGTTGCCAACACACAGATTAAAATGATTGTGGTGGGAGGAAATCAGGTCGGCAAAACCTCCGTCGTTAAGTCTTTAAGTTTGACTAAAGATTGGAGAATTGGAGGTGTGGGAGATGTCGAGAGGACCCAAGGAGTCGAGATCTCATCGTTTGATCTCATGAGTTCGAAGTTGAAAGTATTCGATTTGGCTGGAGACGAAAATTTCTTTAGCACTCATCATTTCTTTCTTTCGGAGAACACTCTCTACCAAGTGGTTTTTGATATGAGCGCTTATGCTGTCAGCAAAACGTCGTTGTCAATGTTCCAGCTTGGAAGGGTAGAGCTTTGGCTTCAGTTTATCTACTCGAGGGCGCCGAATTCTCACGTTCTTATCGTTGGTACTCATGCCGACGACCCGAAGCTTAACGACGGAATCCGAACACGCATTCGTGAAGACATGGAAATCCTTCTCAACAAGTATCGTCGAGTGCATAAAGACCAGTTTGAAGGGGAAGCAGTTCCAAACTGTGGCTTGTGTGAGGGGCGCCCGATTTGCGAGGGCTCCATTGGCTCTTTTTTTTACGCCCGGGATCAAGAGAGCCCTCGAAGTTCGCCCCTTGTCCCAGAGCCCTGTATTCCTCACGTGATTGGTTATTACGAGGTGAGTTGTCAGGGTCAGTTTCCCAAGAATATTTTTAGTTCGAAGAACAGAAGCCTGCAGAAGCTCAAAGTTGCAGTGGATTCTGGTGCCCGCGTCCTTCTCAATACGAAGGTCAGTTCCCGAGTACCGCAAAAGTGCCTATACGTGCGTGATCGGATTCACGAGATGTGCAATGGGGAGAGCGAGTTAAAGAAGTGGCCGTTGCTCACATATGACCGACTGCGTGAGATTGCCAGTGGCTGTGGAGTCGAGCAGGAATTCAAGCTCAAAGCGCTTATGACGTATTTCCATTCCCAAGGAGAAATTCTATGGTACGAAGACATGCCTGGTGTCGGCGATGTCATTTTCATCGATCCTTCGTGGGTGTCGGCGAAGTTGTGTCATCTTGTCGGCTCAAATTCGGGCGCAAGCTCGGGAATGGACGGAATTTTACGCATTGACAACTTGGCCAAGACCTGGCCTGATGTACCCGACGGAGAGCGATTTTCCATGCTGACGTTGTTCAGAAACCTCGGTTTGTGCATTCCCCTCTCTGACACCGAAGAGCTTGTACCTTTTCAACTGCCCATTGGACACCCCGATAAGAGCACGTGGTCGGACCAACCTTCGGATGGCGAGCGACAGATCAGTTGTGAGTTTCAATTTAGTTTTCTTCCTCCGACATTCTTCAGTGACCTTATCGTTACCATTAAGAGACGTAATCTGCCCAACTGCTACGAAGTCGAGCCAACATTCTACCGCTTCCACATGGTATTCGCTACGACATCCATGGCCGACATGGGCTGCTCTTTACACTCCAAAAAAGCAGCAGATCCTCATTTGGCTGAAAACCTTAGAGTGCATAGAGTGAGCATCGAGGGTGTCCCGTTTGAGAATAAACTAAAGGTAGTCATTCGAGGATTCCAGCCCTGTTGTGTTCTCCCTGACTTAAGAGCTGCCATAAAGATGGTAGTGGACACGCGTTACCCGGGTGTCCGACACATCCGACGAATAGTCTGTCCCGTCTGCGAACGCACCGGACTCAAGAAACCTTCGCTACTCAACAACATCTACCCCGATGAGGTGAACTTTTGTTCTTGGGGCCACGCTCTGGGTAAAGAAGACGCCATCATCGCGGGTGATGTGCCAAGGATCGAAACTTGTCTTGATCTGCCATCTAAAGTAAGAACCAGTGAAGTTAGGCTCGGAGTATTTTACAGTGAAAGTGGAAGTATCCTGGATGACTGCTATTGTCCAAGACTTCTGGCAGTCTTCCCCATCGGCTTTGAAAGTGCGCCATTCAAAAGTCGCCTTCATGTGAATTCGCCCATTACCGATGGCTTTGCAGTGCATTTCCTTTGCGAATGTCCTGGTTACTGGCATCTCACCGATGCACCAGGCTTTCGCATTCCCAACATGCAGAATTTCCTTGATATCTTCGGTGCGCGCGCAAGCAAACTCTTAAAGCTGGCGTTCATGTTGCGTGACAATGACTCAGAAAATGGCTCTCGTGCGTCACGCGTCCCAGTGAATATTGTTTTATGGGATTCGCGTAAGTTTCGTGACATGCTTATAACAGACATTCAGGATCTTCTAGAACACTACTTCTGTTTGTTTCCCGAGCTTAAGGAGAGCTGTACGAGCTTCATGCAAGAAGACCTGAAATATCTTCTGAGCTACGACGGACTGAGCCGAACCACTCTGTGTAGGCTTTTGGGGATTTCGCCAGACTGGTGGAGAGTAGGCCCTCTTGTATGTTCGTATGACAGTCGCTCAAAAGAACATCTGTGGCTATGCGACAAGCATGCAGTGTAA

Transcript

amic_s0062.g42.t1

AATACAATCAATGGTGCCATTGTAAATGTGGTACTAGCTAAAGTGAAAGCCTCACATGGATCGTCTTTTTTCGGATGTGCATTCTTTCGAGAACCGTGTATATGTGTACAACTCTGATAAGATCTGAAAACTTCGGAACTCAAGATGAGAAAGGTGAAATGCGTGTTGGTGGGCGACGAAAATGTCGACAAGCGAGAACTTTTCATCAAATATGTCGCCATGATGAATGCTGAATGCGAATCAGCAACTGAAGACGTGGAAACGACGTCAAACGCAGGGAGAACAAACCAAGGTCAATTGAACGATGCATTTAAAAATGGAGATAAAAAAGGCAGTAAAAGAAGCACGATGCGAGGTAGTTACGTGCCATCACATCCGAACTTCCGGGTCATTCATAGCAGGGATGAGAGAGGCAGCGTGACGAGTTCAGAGTCACCCGAGGAAGCTATCGACATTTGGTCTGGCAGCGTTACCATTGATGGACGTCAGTTTTTCGTAGATGTGCGTGACGCTCCCTGTAACGCAGCTTTTGATAACATCAGACGAGACAATTACCCGGATACGGACGTTTTCCTTGTTTGTTTTTCCGTTGTTCGTTTGTTGTCGTGGGAGAACGTTTTGAAAAAATGGATACCAGAAATTCAAAAGATCTGCCCCATAACTCCGTTTATTTTAGTCGGAACGCAAACAGAATGGCGCGAACTCTGGGACGAAAGAGATCCTTCCAGAAGACCGATTAATACTGTAATGGGAGAGTCTTTTGCCCATCAGGTCGGTGGTGTAAAGTACATGGAGTGTTCCACTAGTGATAATGAAATTAGGACAATTTTTGATACCGCTGTGCGCGTGAGTACGATGGATCGTATGAAACTCTCCACGTATTCGCCCGAATTTGAAACAGATGGAAGCACTTTGCTTCACCGCGCTGCTAAACTCAATCATATCCCATCTCTGGAAATCCTCGTGGATACAATCGACCTGACAGTCAAGGACAAACACTTTCTTACTGCCTTAGACGTCGCGCTGAAAGACGACAACTTGAACGCAACGCGCTTCCTCATTGAGAGCGGCTGCGAGATGCTCGCTCCTCCAGAACGCTGGAGGAAAGTGTGCGAATTCTGGATCGATGATAGCGCTGACTCTGAGCAAGTTGTGAATAGCGACATTACCGAGTTCACAAGACAGTTAACGTTCTTTTATACTTCCGCTTCGTTTCGCCCGCTAGGAAGAATCCTTTTGATTGGACAAAATGGTACAGACGTTGCCAAATTTGTCAACGAAACTGTCCCTATGCTTCCTGTGCGATCTTTGACCATAGTCAATGCTGAAGGACCGACGTTGTTTGATTTCTCGCAAGTGCAATCCTGCTTGGAATCTCTTACAATTACGAACTGCGATTTCGGCTCGCCGGAGTTACCTGGAACTGTGTATTCAGTGAAAAGTCTGAAGAGCTTGTGCGTCGTTAAGTCTGGCTTGTCGCGCTTGTCGGAACAACTCGGAGAGTTGAATGGCTTGCAGCGTTTGCGCCTTAGCTCAAACAAGCTACGGAGACTTCCCCACACCATTTCCAGACTGCAAAAGCTGAAGTTTGCTCATTGTGATCGAAACTTGCTGGATAATCTGCCCGATACTCTAGGATGCTTGGCCTCTCTGGAAACGTTGGACTTGAGTTATAACAAGCTGGAAAAGATGTCCCCATCCCTGGGCTTGTTGAGCAATTTGCGGAATCTTTGGTTCACGAGAAATCGCTTGAAATTTCCGCCCAATCACATTCTTAACAAAGAAACTGATTGCATTTTGGAATATCTCAGTGATTTCTTGGACGATCCTGTTGCCAACACACAGATTAAAATGATTGTGGTGGGAGGAAATCAGGTCGGCAAAACCTCCGTCGTTAAGTCTTTAAGTTTGACTAAAGATTGGAGAATTGGAGGTGTGGGAGATGTCGAGAGGACCCAAGGAGTCGAGATCTCATCGTTTGATCTCATGAGTTCGAAGTTGAAAGTATTCGATTTGGCTGGAGACGAAAATTTCTTTAGCACTCATCATTTCTTTCTTTCGGAGAACACTCTCTACCAAGTGGTTTTTGATATGAGCGCTTATGCTGTCAGCAAAACGTCGTTGTCAATGTTCCAGCTTGGAAGGGTAGAGCTTTGGCTTCAGTTTATCTACTCGAGGGCGCCGAATTCTCACGTTCTTATCGTTGGTACTCATGCCGACGACCCGAAGCTTAACGACGGAATCCGAACACGCATTCGTGAAGACATGGAAATCCTTCTCAACAAGTATCGTCGAGTGCATAAAGACCAGTTTGAAGGGGAAGCAGTTCCAAACTGTGGCTTGTGTGAGGGGCGCCCGATTTGCGAGGGCTCCATTGGCTCTTTTTTTTACGCCCGGGATCAAGAGAGCCCTCGAAGTTCGCCCCTTGTCCCAGAGCCCTGTATTCCTCACGTGATTGGTTATTACGAGGTGAGTTGTCAGGGTCAGTTTCCCAAGAATATTTTTAGTTCGAAGAACAGAAGCCTGCAGAAGCTCAAAGTTGCAGTGGATTCTGGTGCCCGCGTCCTTCTCAATACGAAGGTCAGTTCCCGAGTACCGCAAAAGTGCCTATACGTGCGTGATCGGATTCACGAGATGTGCAATGGGGAGAGCGAGTTAAAGAAGTGGCCGTTGCTCACATATGACCGACTGCGTGAGATTGCCAGTGGCTGTGGAGTCGAGCAGGAATTCAAGCTCAAAGCGCTTATGACGTATTTCCATTCCCAAGGAGAAATTCTATGGTACGAAGACATGCCTGGTGTCGGCGATGTCATTTTCATCGATCCTTCGTGGGTGTCGGCGAAGTTGTGTCATCTTGTCGGCTCAAATTCGGGCGCAAGCTCGGGAATGGACGGAATTTTACGCATTGACAACTTGGCCAAGACCTGGCCTGATGTACCCGACGGAGAGCGATTTTCCATGCTGACGTTGTTCAGAAACCTCGGTTTGTGCATTCCCCTCTCTGACACCGAAGAGCTTGTACCTTTTCAACTGCCCATTGGACACCCCGATAAGAGCACGTGGTCGGACCAACCTTCGGATGGCGAGCGACAGATCAGTTGTGAGTTTCAATTTAGTTTTCTTCCTCCGACATTCTTCAGTGACCTTATCGTTACCATTAAGAGACGTAATCTGCCCAACTGCTACGAAGTCGAGCCAACATTCTACCGCTTCCACATGGTATTCGCTACGACATCCATGGCCGACATGGGCTGCTCTTTACACTCCAAAAAAGCAGCAGATCCTCATTTGGCTGAAAACCTTAGAGTGCATAGAGTGAGCATCGAGGGTGTCCCGTTTGAGAATAAACTAAAGGTAGTCATTCGAGGATTCCAGCCCTGTTGTGTTCTCCCTGACTTAAGAGCTGCCATAAAGATGGTAGTGGACACGCGTTACCCGGGTGTCCGACACATCCGACGAATAGTCTGTCCCGTCTGCGAACGCACCGGACTCAAGAAACCTTCGCTACTCAACAACATCTACCCCGATGAGGTGAACTTTTGTTCTTGGGGCCACGCTCTGGGTAAAGAAGACGCCATCATCGCGGGTGATGTGCCAAGGATCGAAACTTGTCTTGATCTGCCATCTAAAGTAAGAACCAGTGAAGTTAGGCTCGGAGTATTTTACAGTGAAAGTGGAAGTATCCTGGATGACTGCTATTGTCCAAGACTTCTGGCAGTCTTCCCCATCGGCTTTGAAAGTGCGCCATTCAAAAGTCGCCTTCATGTGAATTCGCCCATTACCGATGGCTTTGCAGTGCATTTCCTTTGCGAATGTCCTGGTTACTGGCATCTCACCGATGCACCAGGCTTTCGCATTCCCAACATGCAGAATTTCCTTGATATCTTCGGTGCGCGCGCAAGCAAACTCTTAAAGCTGGCGTTCATGTTGCGTGACAATGACTCAGAAAATGGCTCTCGTGCGTCACGCGTCCCAGTGAATATTGTTTTATGGGATTCGCGTAAGTTTCGTGACATGCTTATAACAGACATTCAGGATCTTCTAGAACACTACTTCTGTTTGTTTCCCGAGCTTAAGGAGAGCTGTACGAGCTTCATGCAAGAAGACCTGAAATATCTTCTGAGCTACGACGGACTGAGCCGAACCACTCTGTGTAGGCTTTTGGGGATTTCGCCAGACTGGTGGAGAGTAGGCCCTCTTGTATGTTCGTATGACAGTCGCTCAAAAGAACATCTGTGGCTATGCGACAAGCATGCAGTGTAATAGGCCATGCTTTATTGCTACTGAAGCAGCGCTCAGTGGGAATTAGGTTATTGGTGGTCCCGCGAAGACCAAAGATATAGGAATTCTTGATTTCTCTGTGAAGTTCACAGTTTGTTTCTGTCACtacggagtttaagatctacgacgcgacggaagcgacaacgccacaaattttgcatatttaatgaacaaaaacaaaacctttgcactcctttcacgtgcttttattattactgtacatttctttcccgttctcgacaaatctgcggcgtgaaaaaagttttaacgagaacgtgaacacacaggtgccaattgaaattttctttcctagcgttgacactgtacctctaaattcagttcctgagtagtcttgctagctttcaaaagttacacaaactgagatgatgacgaaaaagattgacaaacttgaacttgcaattttgagcgacgttttcgctaccgtcgcgtcgtagTTTAAGCAATCGCGGCGGCTGACGGCGATAGCAACGCCGCCCAACAGCGATATTGTCATTTTTAGGGGAAAGAAAGGATTCTGTGCGTGTGACGTGCACTGAAGAACCTTTTTTGACATACGATCCCATCTTCATCGTCTATCATGAGAATCGGTCTATGAGAATCGGTCTCCCTTATTCTGTTGCGTGATAACTCGCTCACAATGTGTTAAGTAGATGACGTTTTTTGCTAACTTGTCGCAAACTTCTGTTCTGGAGTGTCGTTCGTTTGTCGCCGCAGTTATTGTCGTTGTTTCAATTCCCTCTCGATTTTCTCGAAGTCAAGTAGGACTTCGAAGAACGTAATAATTCGTGAAAGAGTATATTAGCGAAAAGCCAAAATGCAATTGAGTGGCGTTGAATGAAATAGAAATTAATTCCGTTCATTAACCAATCGCAAATGTCAGAGACATTCAAATAAATCTATCGTATTGCAATGGGAAAGAATGCAGTCGGCGCAAAGCGCGGGAAACTGTGTGTAATCAAGACATTGGTCATTTTGCTTTTGTTTGATTGGCTAGAATGTGTACGAAAAAGTGTAAAATTAGTTTTGAAACTTTTATTAGCGGTGACTGTAGTAATGATGCCCTGTTACTCTGCTGTTAATTGAACTATTGTTTCGGTTTTACGATCATTGCAATAATGCAGTTACCAGAACAAGGTAAATGCACTGGGTGCAATTGCTGCTGTGTGTGTCACATAGAGTTGCAAAGATGAAAGCAGATCATCAAAAAAGAAAGATGAGAATTTGGATAAATTCTTGTTTAAAGTGGGCTGGGACCACAGTGATTAAAATATTTTGTTCCACTTATTCTGCTATTACTAAAAATGATACCACTTGTAATTTGCGACTAATACAAATGAGTGAAAAGAAAGTGGTACAGCGTGAAATAAGGAGAGCAATGTAAGATTTTTCCCTTTGAAAAATTTTCGTTTTCGATTTCGGGCGACAGAAATTTCTTAAACTTGTAGTTATCAAATTTGATAGATTGTTTACTGACAATCGAAAGAAAATGACGCCAGAACACAATTATATTTTTGTAACGGCATTGACGTGTAATCACTTTGAAAAAATATTTTAAATCAAAGGGTTTACAGAATTTTTGTGTCTTGCAATTAAATGATATTTCTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P60763	Ras-related C3 botulinum toxin substrate 3 OS=Homo sapiens OX=9606 GN=RAC3 PE=1 SV=1
P60764	Ras-related C3 botulinum toxin substrate 3 OS=Mus musculus OX=10090 GN=Rac3 PE=1 SV=1
P40792	Ras-related protein Rac1 OS=Drosophila melanogaster OX=7227 GN=Rac1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003176 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16095 all species →	COR	C-terminal of Roc, COR, domain	Family	Interproscan
PF08477 all species →	Roc	Ras of Complex, Roc, domain of DAPkinase	Domain	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032171 all species →	Domain	C-terminal of Roc (COR) domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003578 all species →	Family	Small GTPase Rho	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR020859 all species →	Domain	Roc domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072 all species →	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0007163 all species →	Biological Process	establishment or maintenance of cell polarity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0032488 all species →	Biological Process	Cdc42 protein signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0062.g42.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.