Detailed information of amic_s0062.g66.t1 in Acropora microphthalma

Genomic Location: sc0000062_pilon:1197438...1212733
NR annotation: XP_044180092.1, ubiquitin carboxyl-terminal hydrolase 48-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q86UV5Ubiquitin carboxyl-terminal hydrolase 48 OS=Homo sapiens OX=9606 GN=USP48 PE=1 SV=1
Q76LT8Ubiquitin carboxyl-terminal hydrolase 48 OS=Rattus norvegicus OX=10116 GN=Usp48 PE=1 SV=1
A0A0R4IB93Ubiquitin carboxyl-terminal hydrolase 48 OS=Danio rerio OX=7955 GN=usp48 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003580 (this species only)
Ubiquitin familyULD|UFD/UBQ|UBQ_Other · all ubiquitin genes in this species
Ubiquitin familyDUB|USP|USP · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00443
all species →		UCHUbiquitin carboxyl-terminal hydrolaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR028889
all species →		DomainUbiquitin specific protease domainInterproscan
IPR035927
all species →		Homologous_superfamilyDUSP-like superfamilyInterproscan
IPR000626
all species →		DomainUbiquitin-like domainInterproscan
IPR044743
all species →		DomainUbiquitin-specific-processing protease 48, Ubl domainInterproscan
IPR038765
all species →		Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR029071
all species →		Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR001394
all species →		DomainPeptidase C19, ubiquitin carboxyl-terminal hydrolaseInterproscan

 PANTHER
No PANTHER signature was detected for amic_s0062.g66.t1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0004197
all species →		Molecular Functioncysteine-type endopeptidase activityInterproscan
GO:0004843
all species →		Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0016579
all species →		Biological Processprotein deubiquitinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0062.g66.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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