Gene detail

Detailed information of amic_s0062.g7.t1 in Acropora microphthalma

Genomic Location: sc0000062_pilon:119857...132465
NR annotation: XP_044168430.1, mitochondrial division protein 1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0062.g7.t1

CATCTCTAGTTTTTATTTCTCAACTTTCCTTCTGAACCTAAAATGCGTTGATTCATTTTATAACAATGCGCGAAAAGTGATACTCACGCGGGATCATATCGAAGTCGACCGCCAAATTCAAGTAAACAGCTCTCGTTCCAGTCCTTCCCGTTCTCTATGTTTGTAATGGCCGACAAAGAAGACCAGCTAAAACTCACCTCCAATGAAATCAAGAAATTTCGGAAAAAGCTTCGCCAGATAAAGAATCTCGAGGAACTAGATCGTGATCTTTCAGAGGAGGAACTTTTGAAGATTTCTAAGAAAGATGAATTTCGCTCCAAAGTTCAGCATCTGGTAGCAAAGTTTGAGGAATTGAAGTCTGATGCACAAAAAATGGAAACCGAACAAACGCATGTTGAAGCAGCTTCGATCGATCAAGAGGAACAAAGAGCCAATGAAAGCACAGAACTTTTAGCAGAGACCAACGGCAACAGCCATGAGGATGCTCCCATCGAGATTCCTGAGCAGGATACAAATGAGGCTACCGTAAGTCAAGCTGATGACCAAGCCTTTGTGTTAGAAGCTCGCCCACCTATCCGTATTCCAGATGTAGTGTTAGAGGCCCAGACCCGGAGAGCACCTCTTTTGCCGTCTGATAGCATGACCATGAGATTTCATGTCAGGAATTTTGAGGGCCACAATGACATCATTTATGGTGTTGATTGTCAAGGATCTGTTCTGGTGTCTGGAGGGCGGGACACGATGCTGAAATTCTGGAATGCAGACACTGGCCGAGAGATTAAAAGCATGGGTGGACATTCAGGAACAATAACATCGGTGTTGCTTGTACCAAAAGAGAACAACGCTTCATCGCCTGGCTTCCAAACTGAACAATACTCCGTGCTGACAGGCTCAAAAGATTGTTCCATGAAAATATGGTCTCTCGCGAAAGAGGGTGGGAAGGTGGAGTTATGGGATCTGGAGTCGGGAACTTCTTTGAGATCTGTGCGAGGTCACGACGAAGATGCTGTAACAGCTATCAAGTTCCAGGACGACCGGGTGGTGAGCGGCTCAGCTTGCGGGGTGGTTAAAATTTGGGACGTTCGTGACAATTCTCTCAAGCCCGTAATGAGCTCAGAGCATACCTCTGCGAGTAACGCCGCCGAAGGCGTCACTGTTAAACCAAGACGCGTGCGCTGCTTAGCTACGACTCAGGACGCGGTGTATTGGGGAGATGACGGAGTGAACATGAAAGCAATGGATTTAAAGACAGGTAAACTTCGCAAGATTCCTAACCACGTGACAGAGTTTGGATGTACCGGTGCTATGGCAACCACTGGCAAGTGTCTTGTGAGCGCGGGGTACGATTTGGATCGTGGAAATGGATATCTGAATGTTCGCAGTCTTCCCTCCGAGGAATACTTGGCAACCGTTGATGACGAAAACACTGGTTGTATCACGTGCTTATCGTGCACCGAGACGACGAGTGACAGGGTGACGCTCCACAGGATGTGCTCGGGAGGACTGGAGCTGAAAGTTTGGGATCAGCTGCCGAGATCAAAGGTCAAGAAGCGCACCAGACCGGAAACTGATGACGTGTGCGTCACGGCGAAACACGTTCGCCGTTACGGTCTCCCCGATATTAGTGATACGGAGAGTAGCGAAGAGGACGAGGACCAACCGGAAGGAGATGATTCTGATGACGAAGATGACGTCAGTAACACCGGAAGTACATCACGATCTTGGTGCGCAATATCATAACGAATGAGAGCCTGTCAGAAAGTGGCCAGCACTCGCCGTGTCAAGGAGCGTGCGCAGATTTCGTTGTGTGAAGTACCACAAATATTTTGAATGCGTTTGTCAGAAACCAACGTATACTTTTTCTCTGCACTCTGTTTCGAATCAGTTTAAGTATGAAAAGGTAACGTCACGTCGACACTTCACACCGTGTAACAAGGAAGCAATTTGGAGTTCCTTCGGAAATATCCTCGGCGAAAGAAAAGATTCGAACCAGGGAAACGTCATGAAATGGTATTGGATCGTCAACTGCTAAAGTTTCAGCTGTGAAGGTCTTCCATGACTGGGATTCACAAACGAGAATATGAGGCAAAGCTGACTTGTAATGAGACACAAATTGCCTGAAAAATGCACTCTAACGAAACAGTGCTTCGCTTATCTTCTCCCTTTTATGCCGTGGCTCACAACAATTGAACAATTTGAGATTAATTTCTCTTTGAAATTCGTTACTTTGTTATTAACGTGGTTTTATTTAAGTTTTTGTTTCGTTTCTGGATGCGAAATACTTCTCTGGAATGGGAAAAAAAAACTTTTATTCAGGTGACGAAAAGCTTCTGAAGTTTGCAAAGCAATATCGAGCACTAATATCCGAATTGAAGGACCACGAATTTTTGAGAACGTTCTAGACTTCCAATACGAGGTTAGATTCCAGTTCTTGTCGTTTACAACCTGGTGCGACCCCAGCAAATTTGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P87060	WD repeat-containing protein pop1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pop1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003284 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22847 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14793	RRP9; ribosomal RNA-processing protein 9	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.