Gene detail

Detailed information of amic_s0063.g34.t1 in Acropora microphthalma

Genomic Location: sc0000063_pilon:763867...771065
NR annotation: XP_015757635.1, PREDICTED: ADP-ribosylation factor 3-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0063.g34.t1

ATGCGGCTTTTCGCGCTGCAGTTTGCAAGAGGGCTGGACTCTAACGATGCAGTACGCTAAGGTGTGTTTCAATTTGTAAAAATGGCGGAGCATTTTATACTTCAGTAACCAGATTTCCAAAGTCGTAAAGCCACCATTTCTTCAAATACTGACCCTAATTCGCGGACTAAGCGCCCAGGCTTAATACGTTACAATATGGGGAAGTTATTGTCCAAGATCTTTGGTAACAAAGAAATGAGAATTCTGATGTTAGGCCTAGATGCTGCTGGAAAAACAACTATTTTATACAAACTGAAACTTGGTCAGTCAGTCACAACTATACCAACTGTTGGTTTTAATGTGGAGACAGTTTCCTACAAAAATGTCAAATTCAATGTTTGGGATGTTGGTGGACAAGATAAGATTCGCCCATTATGGCGTCACTATTACAATGGAACCCAGGGACTAATTTTTGTAGTGGATTGCGCTGATCTTGACCGCATTGATGAAGCAAGAACAGAACTTCACCGAATAGTTAATGATAGAGAGATGAAAGATGCACTTATTTTGATATTTGCTAATAAACAAGATTTACCTGATGCAATCAAGCCTCATGATTTACAAGAAAGATTACACCTCACTAGACTAAGAGATAGAAATTGGTATGTGCAGCCATCTTGTGCTACCTCTGGTGATGGCTTATATGACGGATTAACCTGGCTGTGCTCCAATCACAAACACTGATCACTGTTATCTCACATTAACTGTGCAGATTGCAGTGTACTTTAATTATTCAGATTTTCTGTGGCAAACTGTACAACTTTGAAGTCCACAGAGTGATTTTATCCAAAGGTACTGAGAGTAACAAAACAAATGTAGGAAACCAGAAAAGCTATGGGCCATTCACGTTCCATAGACATCATGAATTTTGCATAGCCAATGGAAAGAGAACAAGTCATTGTGACAAGATCTATTTCTGACAGTGATTAGCAAGCCTCCAGAAAGATAGAGGTTTATAATATAACCTAAAGATTTAATTATTTGTCCTCCAAGTCGTTGTCAGTGTTATTAGATATTACTGCTAACTAGCAGCCAAATTTACTGCTGGACATGACTCAAAGACAAGCCAGCGCAGAAGATTAACAACAATTATTATTACGTATATTCAGACAGCTTTGCATTCTACCAATAATCTTGCAGTACAGTATTTGAGATGTTTTACTAGCAAGCTAGTTTACAGTACATTGCACAAAAAGCCTGCGTGGATAAAGCTGGTTTCAGAACCACTGAGTGTGTATCAGTTTTCCACTCTATCCCTTAGTTTGTTAGGTCATGTGTTAACTTTCTGGTTTTTGTTTTCTAACCCTTGATCCGTCCGTTATGCCAGCTAAATAGCACCTTTATTATTCTAGAGTATAACTTTGAACTGTGGCAATTTCCAGCCCCCTCATCCTTTACTGTAGCTGGTGTCTGATCCTCGAGCATCTGTCTTACTATAATGGAATCCTTTTTACTTACTGACTGATTTAACAACAGAATTGTTATGTTGTTGACCACAGCATGTGCTGCAAAAATTAAGTCAAGTAATAATTATCATTATTAGAATGAAGTCCAAATTGTTGTAAAATGCCGACTTGTGATCTCTGAGTATTTGTTGCTAAATCAGGCTACTGATTGTTAAATAGCACCTTTGGAAGAATATTGTTTTATTGTGGGTGCACAAGATAACTGTAACATGCCCTTTCCCCCCATGTCTCTTCTCTGTTTTTTTCTTTACGAATTGAACAGTTTAGTTCAAAGCAGTTCAAGCAGGCACAAATCCACATGAGGTCAACTTGGCTCACTGCAAGTTATCCTTTCTGTTTTGCACATCAAATTCTTCTTATCCTGTCATTTCTTTAATGTCCCTTTTTTGTGGGAAAAAAAATTAAAATAATTATAATTAAAGGCATCACATTTTTAATAATATTTGCAACCTGAATTGCACCATATCTATTGCTACTAATAGCATGATTTTAGTTTTATTTGGCATAAATAAACTTATGATATTTCAGAATAATCTATTGTAATGCATAAGTTGAGTATATCTGGAACAATAATTATTTTGAAATACCATGAGCATTAGTATTTATGCTGAATAGCAGCTATAGCAATGGTACTATAAATAGTTTTGTTTGCATGAGATCTTAAGCAAATTTGACATGCCTACACATCTTTAAGTATTTCAATATTTAGGTGAAAGACCATAGCTCCTGAGAATTGTGTTGCTAAAATTACTCTGGTTGTGGTATAAGATTTGCAAAGTGCACTGTGCAAATTCTTTTGGTGGATAAGAGTAGTGGCTAAACTATCTGTTGTCATTAAACAACACAGTCACAGAACAAGTTTAGAAACAATTTTTTTTTTTTTGAAAATTGGTTTTCCTTCTTAAAAAAAGTGAACATTTTATCAGCATAAAAAGttttgtttttttttgtttgtttttttACAATTTTGTTGAAAAGGACTTAAAATAGTTAAAAGTTGTTCCTGCAGATATATGTGCTATTTGATGCTTGGTCTTGTTTAAACAGATAGTTAATTAGACATTGAAAAAGTTAATGTCATATTTTATTTCTAGGGTAGTGATGTAAGCTTTTATTCATATCACGGTATTTTTCTTTAAAGAAGGTTATACAGATGGTGTGATTTTTATGGGGAAGTGTCTGATTCTGTTATGAAATTTAATCCCTATTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P40946	ADP-ribosylation factor 6 OS=Drosophila melanogaster OX=7227 GN=Arf6 PE=1 SV=3
P62330	ADP-ribosylation factor 6 OS=Homo sapiens OX=9606 GN=ARF6 PE=1 SV=2
P62331	ADP-ribosylation factor 6 OS=Mus musculus OX=10090 GN=Arf6 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000273 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00025 all species →	Arf	ADP-ribosylation factor family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024156 all species →	Family	Small GTPase superfamily, ARF type	Interproscan
IPR006689 all species →	Family	Small GTPase superfamily, ARF/SAR type	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041838 all species →	Family	ADP-ribosylation factor 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11711 all species →	ADP RIBOSYLATION FACTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07941	ARF6; ADP-ribosylation factor 6	-	GTP-binding proteins	ko04031	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.