Gene detail

Detailed information of amic_s0063.g37.t2 in Acropora microphthalma

Genomic Location: sc0000063_pilon:789267...833015
NR annotation: XP_029211867.2, ras and EF-hand domain-containing protein homolog isoform X3 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0063.g37.t2

ATGGCTTCCTTAGAAACAGTGAGACCTGGTGATTTATTTGGAACGGTTGACTTGGATGGAAGCGGGTACATAGACAGAGAAGAATTAGCCGCAGTTTGTGACTTGGACGCTAAGGATTTGGCGGAGGTCTTTGACAAGCTTGACGCGGACAAAGATGGGAGAATAAGCATCGAGGAGTTTTCGGAAAATTTCAGAAAATTTCGATCTGTGGTGTCTGGAGTGAAACGAAAAAAGTCGGAGCAACCCTCTGACGCGGATGTGGACTACGAAGATTTGAAGGAAAAACTTGGAAGATCATACTCTCTGCTTAGTGGATCTGTCAAAAAGTACATGTGTGAGGTTACTACTCGGACAAACTTGATTTTGTCGATAACGATATCATTTATTTTGCTTCCAAACGATGGAATAAGTATGGAAACCGATGAACAAGCTTACACGGAAGACAACGTGAAAGAGATTTTCGAAGACTGGGATTTGGACAAAAATGGTTTTATCGACAATGAAGAGTTGGCTTCTTGCTGTTCTGAATTGAATTTATCACACGAGCAATTAAACAGTTTATTTATTGAACTAGACTGGGACGGAGATAACAAGATCAGTCTGGATGACTTTTCGAAGGGTTTTCAAAGGGTTTGTTCCCTGTTTCACACGGATGTTCAAGCTGAAAACGCAGAGTTAAAAGAAACAAGAAAATTAGACAGACTTCTTGAAGCCTTCGATCTTCGTTTATCGTCCGGGCAAGAGTATGTATCAGATTTATTCCACTACCTACACAATTCGGGTGACTCACCACAACTCTTGGCATTGCTGGAGAGCTTTCTCTTCAGTGTTATCAGAGATGTGAAGCATTATTCATCAGAAAATGAGAGACTGGAAGAAGCCCTCAAAAGGACATGCGAGAAGCATACAGAACACATGGATCAGCTGGATAATGAAATGGAACAGCAGATGCAGAGACTTGAATCACGGATCAGGAAAGAGGAGAAGAGTAAACAAGAAAGGGCAAATGTAGACATTGTTTGGCAACTGGAGAATAAGAATAAAGAGATTCAAACTCTGAATGCCAGAGTGCAGAAGCTTGAGGGAAGACTGAAAAGAAAGGAACCTGAAGAACAAAAGATAAAAGAAGAGGTGGATGAGAAAGTCCAGGAGATACGATTTCTACGAAGCCAGTTGACCGATGCACAGACCAATCTTGCGGTGCTTCGAAGTGAACTGGCACAGCTGAGAAATGACTATGAAGAACAAGAGACACAGCTTACAGCTGAGAAGGCAACTGTATTGGAATGTGTGCAGGAGCAAGAAAGCTTAACAAGACAGCTCCAGTTACTCCATGAAGCAAACAAAAAACTTCATGATACAAATGACGATTTACGTTCAGCTTTAGAGAGAACGAGACTTCAAGACAGACGAAGCCCATCGCCTAACAAAAGGCATTCAATATCTACTCTCTATTCGCCCACATCAAGTTTTACACGGAATACAAAGTCATCTGGCAATAGGTCCTCCCCAGCGTTTGCAGATGACAGCGTAGATGGCGGAAGGTCAGGGCATACATCACCATCAAGGCGTCTTCCTTCATCCACGCCACTGCCACTCAGCTCTACAAATTCACGAAGAGGATCGCTGCTTCCATCTCAACAGAGCTGTGAAGTTGACGATGAGAGCCTTGTCAATGAAAACTCGCTCATGACAGAGTTAACACAAGCCCAGCAATTTTCGAATTTCCACAAAGACTTAATcgacgacgaggacgacgacACTTACAGTTCAATGAAACCGTCACAGCGACAAACCTTCTCCAAACAGCTGGAAATCTTGCACAAGACCAACGAAAGATTGTGCAGTAGCAATGATGACTTGCGAGCAGCCCTTGAGGCTTTAACTGGTAGAAGGCCGTTCTCCTTAAAGTCAAAGTCTCGACGGAATGGTGAGAAGGGCCAGAGAAATCCCAGTGTCCATAGCGATTATGGTTCCATATCAAGTCGAAGCATTACTCCAAATCATTTTCAAGGCCCGAAGTCTGAGGATGATGTCGGCGATGGTGCTGAAGCGGACGAGCTCTCTGGTTACGATCCTGAATCTGATGCCACTACCATGACGACTGACTCTCCACCAGAATCGGACAATGGCAAACCAGATGCGCAGCTGAGCGCAGAACTTGAGGCGCAGTTTAAAAGTGTAATCGAAGAGGATGACGAAGATATCGACGAAGATGACGTGGGAGATGAGGAGCTGGCGAAATTGGTTGCCATGGCATCCGCTCTCACTGAATCCGAAGGAGAAACGGACACCGAAACAGAGGCCCCCGAGGGAGAGAGGGTTCCGGCTGTTGGTTCAGATTCCATTTCTGAAGCATCGAGTAATGCCCCTGTAAAAGTGACTGCATCGGTAGGCGCTGATCCTGAACGGATGTACAAGCTAGTGTTAGCTGGAGATGCCGCAGTTGGCAAATCCAGCTTTATTCTCCGACTTTGCAGAAACAAATTCCATAACGCTCTCAACTCCACCCTAGGTGTGGACTTCCAGACGAAAACTCTCTGTGTTGACGGCAAAACAATTGCGTTTCAGTTGTGGGACACTGCGGGCCAAGAAAGGTTCCGCAGTATTGCCAAGTCTTACTTTCGCAAAGCAGATGGTGTTTTACTTCTGTATGATGTCACTTGTGAAACCTCGTTCCTTGATGTGAGAGACTGGGTAGAGGCTATAGAGGAAAGCACGCCTACGCCTATTCCCATAATGATGTGTGGCAACAAGATCGATTTGCGCCAATCATTTCTCGACGAAGGCAAGACCGTCATAACGCAGGAGAGTGGAGAAAAATTAGCAAAGGAGTATGGCGCGCTCTTCTTAGAAATAAGCTCCAAGGAAAACACGAACATTACGGAAGCTTGCGTTGAACTGGGAAGGTTGCTCAGAAACATTGAGGACACCGAACTTAAGGAAAGCAGTGGATTAAAACTCACGGAAGGGGACAGTAAAAACAAGAAAAAGCCCAACTGTTGCCCAGTGTAG

Transcript

amic_s0063.g37.t2

AACCAGCAGTTAAACAAGCTGCTGGATACATAATGCATTTAGGCTATCTTACGCATCGTTTCAACGTAATGACGTAATCTCATCCCAGCAATAAAAGGAAAAAGACATTTCTTTCATATTGATATTTCTGCGCTATATGTTTCACATAAACGCGCGGTCACCAAAAGGGATCTCACAGGCAGGACAGAAGTTCAGAATACATTCTGAATTTTTCAGAAATGAATGATACGAAATTACCTTTCTTGACGAGTTTCACTGGCTATTATCGGAATTGAGACAGATCATCAAACAAAAAAAGCCTTCTTAATTGAAAAGAAAGATACATTGGTAAAGACCAAAACCAATAAATTGGCAGTCTTTTAAAAACTTTATGCTTCCAGGATTAATTAAAAAGACAAAAAAGTAAAACAAAGTCAAAAGTCTTTGTTGCTGCAATTACGAGCACTAATTCTGACGGTGCCAGGTCCTAAAGTACTTTTCCAGTTTCTCTTCTCTCTTTTTAGACTCATTTGAAATGGAAAACCATGTCACTCAGCTGTATGAGAATGAGAGATGAGAAAACAGTCGACATTGATGACACACTGAAGATCTGAAACTGCTTTTAGGTTTAAATGAATCTTGCCGTGTACGATTTGGTCATCTCCATAAAACTTCAAGCCCAGCGTCCTTGTTGTAGTAAGAGTTAAAAATGCAGCTTGATACCATGAATGGAGTGCGGTCCATGATCTTTCCAGAATCTTTGCCACATAATCGCCTGAGAATGCTTCGATGGTAAAAGTCTACTTTGCGCACATATCCTTTGTTGTTAACAAACGGAGCCTTGTGAAAGGTGTCAAATTTCCGTGCAAACACTGGCAAGAACTACGTTAGCAGTCCATTGTTAAGAAGTGCAGTTTCGATAGTTTCCCAAAACATAAAAAAACGTTCTGACACAACAGGTGGCGAAAACAATGAGTTCTAACAACACTATCCAACAGGAGTCAAGATTTCACAAGAAACTATTTCAACACACACTGAATTCCCAAAGGATGATATGTCAGGATATGACAAGTTACATTGGCGCTGAGCTCAAGTTTCATCACATGTTGGCGAGAGGAAATAAATTATATTTCCCACTGGCCAACACAAAAACAGACGCTTCGAAAAACGAGTACAGTGAAACGCTAACTTAGCGGCAGAAAATATCATTTCTATCTTCAAACCACGGTGCATTATCTGTTTTCAACTGAGGGATATAAAACTTAATTGCGAACTAAAGGCAAGAGATTCTTAGCTTATCTCGACAACTGATCTGGCTGACTTTCGCTCGCGTTACCTTGTCATGTCATTTGTTTCTTCCTCCATGTATTCTCTAAGTGTTCCATGATTTTTCCAGTTTGTAATTCTGTCTTTATGCTAGACAACTTCTGGCGAAAAACCATTCAAATAAATTGCTGAATATTCGTGGACAAACTGAGAAGAAACCGAAATTACGTCTGAAATATGGCGGGAAAAATCGCAGCGTGTTTACATCCGGGAGACGAGGTCAGGGAGGTCACAGTACAGGAGTAGGGTGAGGGAATTATGGAGTGATATTCGACGGGATGGCTTCCTTAGAAACAGTGAGACCTGGTGATTTATTTGGAACGGTTGACTTGGATGGAAGCGGGTACATAGACAGAGAAGAATTAGCCGCAGTTTGTGACTTGGACGCTAAGGATTTGGCGGAGGTCTTTGACAAGCTTGACGCGGACAAAGATGGGAGAATAAGCATCGAGGAGTTTTCGGAAAATTTCAGAAAATTTCGATCTGTGGTGTCTGGAGTGAAACGAAAAAAGTCGGAGCAACCCTCTGACGCGGATGTGGACTACGAAGATTTGAAGGAAAAACTTGGAAGATCATACTCTCTGCTTAGTGGATCTGTCAAAAAGTACATGTGTGAGGTTACTACTCGGACAAACTTGATTTTGTCGATAACGATATCATTTATTTTGCTTCCAAACGATGGAATAAGTATGGAAACCGATGAACAAGCTTACACGGAAGACAACGTGAAAGAGATTTTCGAAGACTGGGATTTGGACAAAAATGGTTTTATCGACAATGAAGAGTTGGCTTCTTGCTGTTCTGAATTGAATTTATCACACGAGCAATTAAACAGTTTATTTATTGAACTAGACTGGGACGGAGATAACAAGATCAGTCTGGATGACTTTTCGAAGGGTTTTCAAAGGGTTTGTTCCCTGTTTCACACGGATGTTCAAGCTGAAAACGCAGAGTTAAAAGAAACAAGAAAATTAGACAGACTTCTTGAAGCCTTCGATCTTCGTTTATCGTCCGGGCAAGAGTATGTATCAGATTTATTCCACTACCTACACAATTCGGGTGACTCACCACAACTCTTGGCATTGCTGGAGAGCTTTCTCTTCAGTGTTATCAGAGATGTGAAGCATTATTCATCAGAAAATGAGAGACTGGAAGAAGCCCTCAAAAGGACATGCGAGAAGCATACAGAACACATGGATCAGCTGGATAATGAAATGGAACAGCAGATGCAGAGACTTGAATCACGGATCAGGAAAGAGGAGAAGAGTAAACAAGAAAGGGCAAATGTAGACATTGTTTGGCAACTGGAGAATAAGAATAAAGAGATTCAAACTCTGAATGCCAGAGTGCAGAAGCTTGAGGGAAGACTGAAAAGAAAGGAACCTGAAGAACAAAAGATAAAAGAAGAGGTGGATGAGAAAGTCCAGGAGATACGATTTCTACGAAGCCAGTTGACCGATGCACAGACCAATCTTGCGGTGCTTCGAAGTGAACTGGCACAGCTGAGAAATGACTATGAAGAACAAGAGACACAGCTTACAGCTGAGAAGGCAACTGTATTGGAATGTGTGCAGGAGCAAGAAAGCTTAACAAGACAGCTCCAGTTACTCCATGAAGCAAACAAAAAACTTCATGATACAAATGACGATTTACGTTCAGCTTTAGAGAGAACGAGACTTCAAGACAGACGAAGCCCATCGCCTAACAAAAGGCATTCAATATCTACTCTCTATTCGCCCACATCAAGTTTTACACGGAATACAAAGTCATCTGGCAATAGGTCCTCCCCAGCGTTTGCAGATGACAGCGTAGATGGCGGAAGGTCAGGGCATACATCACCATCAAGGCGTCTTCCTTCATCCACGCCACTGCCACTCAGCTCTACAAATTCACGAAGAGGATCGCTGCTTCCATCTCAACAGAGCTGTGAAGTTGACGATGAGAGCCTTGTCAATGAAAACTCGCTCATGACAGAGTTAACACAAGCCCAGCAATTTTCGAATTTCCACAAAGACTTAATcgacgacgaggacgacgacACTTACAGTTCAATGAAACCGTCACAGCGACAAACCTTCTCCAAACAGCTGGAAATCTTGCACAAGACCAACGAAAGATTGTGCAGTAGCAATGATGACTTGCGAGCAGCCCTTGAGGCTTTAACTGGTAGAAGGCCGTTCTCCTTAAAGTCAAAGTCTCGACGGAATGGTGAGAAGGGCCAGAGAAATCCCAGTGTCCATAGCGATTATGGTTCCATATCAAGTCGAAGCATTACTCCAAATCATTTTCAAGGCCCGAAGTCTGAGGATGATGTCGGCGATGGTGCTGAAGCGGACGAGCTCTCTGGTTACGATCCTGAATCTGATGCCACTACCATGACGACTGACTCTCCACCAGAATCGGACAATGGCAAACCAGATGCGCAGCTGAGCGCAGAACTTGAGGCGCAGTTTAAAAGTGTAATCGAAGAGGATGACGAAGATATCGACGAAGATGACGTGGGAGATGAGGAGCTGGCGAAATTGGTTGCCATGGCATCCGCTCTCACTGAATCCGAAGGAGAAACGGACACCGAAACAGAGGCCCCCGAGGGAGAGAGGGTTCCGGCTGTTGGTTCAGATTCCATTTCTGAAGCATCGAGTAATGCCCCTGTAAAAGTGACTGCATCGGTAGGCGCTGATCCTGAACGGATGTACAAGCTAGTGTTAGCTGGAGATGCCGCAGTTGGCAAATCCAGCTTTATTCTCCGACTTTGCAGAAACAAATTCCATAACGCTCTCAACTCCACCCTAGGTGTGGACTTCCAGACGAAAACTCTCTGTGTTGACGGCAAAACAATTGCGTTTCAGTTGTGGGACACTGCGGGCCAAGAAAGGTTCCGCAGTATTGCCAAGTCTTACTTTCGCAAAGCAGATGGTGTTTTACTTCTGTATGATGTCACTTGTGAAACCTCGTTCCTTGATGTGAGAGACTGGGTAGAGGCTATAGAGGAAAGCACGCCTACGCCTATTCCCATAATGATGTGTGGCAACAAGATCGATTTGCGCCAATCATTTCTCGACGAAGGCAAGACCGTCATAACGCAGGAGAGTGGAGAAAAATTAGCAAAGGAGTATGGCGCGCTCTTCTTAGAAATAAGCTCCAAGGAAAACACGAACATTACGGAAGCTTGCGTTGAACTGGGAAGGTTGCTCAGAAACATTGAGGACACCGAACTTAAGGAAAGCAGTGGATTAAAACTCACGGAAGGGGACAGTAAAAACAAGAAAAAGCCCAACTGTTGCCCAGTGTAGTGGAAAATTGTAATAGATAGAAAGAGGAAATACCACTAGCTTGCCAAGCAACATGAATGCAGGCTTTGCCAAGCAGCGCGACGTAAGCTAATTTTGATAAAAAATTTTCGTACTCTCTCTCTCTTTCGCAACCTAGTTCCAAGGACCTCTCCGTGTCCTGGGAACGAGGCTAGCGATGATCATTGGAAGTAGTCGGAGCTTAGCGGAGATTCCCGAAAACAATAGTCGCGTAAACGATTGCGGTTTTCATTAGAAAAAAAAACCTCAGGGGTGGAAGGGTCTTTTAGTTGACGAAGAACCGATGGTGGTTTTTACAAAACTGCTGTCTTTTTTACTTTTCATTTCATGAACAAATCGGAGCAAATGCTTATGAGCTTTCAACACATTGCTAGAATATGCAGCCTTTTGGCATCTAATCTAAGCTAAGTGATGGAAAAAGAGTCGACATTTAAAGCAACTTTGTACTTTCACGTTTTCTCGCGTTTAGCGCTAGCCTCCTTCGCGGCCGTTTTTAGGCTCGTCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08CX1	Ras and EF-hand domain-containing protein OS=Xenopus tropicalis OX=8364 GN=rasef PE=2 SV=1
Q5RI75	Ras and EF-hand domain-containing protein homolog OS=Mus musculus OX=10090 GN=Rasef PE=1 SV=1
Q8IZ41	Ras and EF-hand domain-containing protein OS=Homo sapiens OX=9606 GN=RASEF PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001958 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR050227 all species →	Family	Ras-related protein Rab	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977 all species →	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17199	RASEF, RAB45; Ras and EF-hand domain-containing protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.