Gene detail

Detailed information of amic_s0063.g43.t1 in Acropora microphthalma

Genomic Location: sc0000063_pilon:917626...940905
NR annotation: XP_029211887.2, ras-GEF domain-containing family member 1B-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0063.g43.t1

TTGTCAAATCCATCCTCCCCAGTCCTAACTATTCCAAATTTCCTTGCGTGTGGTTTATTCCTCCTGCGAAACATAGAAAGAGGATATTTCAATAGAAAGGTGACGGAGTCTTCTCATGGAATGTACAGTATTTTGAAGGCCTGGGGCATCCTTTATTTGTGCTTCGTTTATACAAGACAATGCTTCTTGAAATCAGTGTGATGAGGATTTGACAGCATTCTTTTGAGGCTAATGATGGCTGCGGCTTGTGTGTCCATGGAGAACCTTGGGCAAGGTCTTTTTGGTGTTCAGTTAGAGGTGACAGAAAAATTACTTGAAGCAGAAAAGAAGAAACTGACACAAATAGAGTTGCAGCTTGATGAGGAAATACGTTGCGGGACAAGTAGTGTTGAAAAGGCCAAGGAATTAACACAGCAAAAATCTAACTATGTACGCCTTTCATTACAGCACCGCCAATTAGCCAAAGAATATGAAGAAGCTGCTAGAGGACTTCTTCGAAGAACTACAAAACAGAGAAAGTCTTCAAGAAGTGTACCTTCACTTGGATTTAAGCAAACTGTAAAGGCAAGGCCGACAATATTTGGAAACCTTGTTGAGGAAGACTACAAAAACCACAACACAGAATCTGACAAACAAGTTAGCCTGGTCCCAGCAAGGGGACCTGCTCATCCATCAGACTTGTCCGGGGACATTGCATTTAGAGATGGACATGTTATATCTGGTACATTAGATGGATTGATTGAACGCTTGGTTCCCCTTCCAAACTATTATCCAGATAGAACTTATGTTTTTGCATTTTTGCTGTGTTCAAGGCTCTTTGTTCTTCCAAGCAATTTGTTGTCCACAGTTTCAAAGTCTTGTGCTGAACAGATCAAAAAGTCTACCACAGAGGAGGCCAAGGTTCTTGCTTTCAATTTAACTCAACTTCTGAGTGAATGGACAGAAACATTTCCCAATGACTTCAGAGATGAGGTGATGATGATGCACATAAAGGACATCACGAGCTACTGTGCATCTCTCTCGGTGGAACTGAGAAACATGGTTGGCCAGATGACGCAGTCATTGTTTAAAAAACTCGCCTTGTTGGTGAAGTATGAAGAGATCTTACAAAAGGCGACGGCAGCTGCTGAGGACCGAAAGCTCTCGGGTTCGATCAAGTACAAGTGCTGCCTAGAAGTTTGCCCAAATCCAGTGGTTCTCGCGCAACAGTTGTGTCACATAGAAATGGAAAGGCTTGTTAACATCGGACCAGAAGAGTTTGTGCAAACTTTTATTCCGCGAGATGACGCAGACTTGAGAatggttggaaaACTTCCCAATGGACATGTTAACTTTGAGAAGTTCTGGCGACTCTCCAAGCTCATTACAGACTTCGTTACTTGGAAGCAAGTTGTTTGTGAATATGAGCGGGATCGAACTGTTTTGAATCACCTCATGACCGTGCCAGTGTTATCAGATAAAAATTTGGCGTATATGTCGTATGAATGCGAGGCTCCTGAAAATGAGTTTGAAAAGGAAAGACGAAAATCTCTTAGGTTTGAAAGAAGTGTCGACAAAAGGTAACTGGTGAAAGTCGCGTCAATTGCCTTTAAGTCAACATCAGCCTTTTTGGATGACTGCCGACAACGAAAGCACAGTGCATGAAATTCTCATTCCTCGTATGAAACGCTTTTTTAGATGCATTGATCGCTTCGCCTTTTTTTGCGCATGTGTGGTTGTTCTCCTGTTACCTTGAAGCGGTTTTTAATTCAGCTCGGTAAATAATAGGCTAGAGTTCTGAATTATTTTGACCAACCACAACAGAAGGGAACCATCAAATGAGCCAATGATAACGCACTACAAGTTCATACCAGCCGGTGCCAAGCGCGGGAAAAAACGTGAGCGAAATTTACCAGCTGGCTTTTATCGTACCACTGATTGGTCGAGGATTTGGGCGTGGTGTGAATTTTTTTAACCCAATCAGGAGTAGCTgttatcggtggttttcacgcataaacgaggcgaatgagtcattttccattgtattgacatataagcctcgtaggcatgtagctgtaaacaaaagagactgcctgtgggcgcaactgcaatgagaactattGAAATCCGTCTCGCGTATAAAATTTAAATTAACAAGTTGTGTGGTAGTTCGAATATTCTCAATTTGTGGTTGGGGCGGTTAATTTTACATGACCCCGGAATGCCAATTAGGTGTATAACATTCCGTGGTTGTTGAGCAGATTTACGAGGCGTGTTGTTTTGTGTTCTTTAATGTTTGGTAAGAAAAAATTCTACACGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IFE4	Ras-GEF domain-containing family member 1B OS=Bos taurus OX=9913 GN=RASGEF1B PE=2 SV=1
Q5RC04	Ras-GEF domain-containing family member 1B OS=Pongo abelii OX=9601 GN=RASGEF1B PE=2 SV=2
Q8JZL7	Ras-GEF domain-containing family member 1B OS=Mus musculus OX=10090 GN=Rasgef1b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007066 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00618 all species →	RasGEF_N	RasGEF N-terminal motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000651 all species →	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR023578 all species →	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR036964 all species →	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR008937 all species →	Family	Ras-like guanine nucleotide exchange factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113 all species →	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0063.g43.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.