Detailed information of amic_s0064.g1.t2 in Acropora microphthalma

Genomic Location: sc0000064_pilon:546...16139
NR annotation: XP_015767597.1, PREDICTED: TNF receptor-associated factor 3-like isoform X4 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3ZCC3TNF receptor-associated factor 6 OS=Bos taurus OX=9913 GN=TRAF6 PE=2 SV=1
B6CJY4TNF receptor-associated factor 6 OS=Cercocebus atys OX=9531 GN=TRAF6 PE=2 SV=1
B6CJY5TNF receptor-associated factor 6 OS=Macaca mulatta OX=9544 GN=TRAF6 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000128 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02176
all species →		zf-TRAFTRAF-type zinc fingerFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001293
all species →		DomainZinc finger, TRAF-typeInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10131
all species →		TNF RECEPTOR ASSOCIATED FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0005164
all species →		Molecular Functiontumor necrosis factor receptor bindingInterproscan
GO:0009898
all species →		Cellular Componentcytoplasmic side of plasma membraneInterproscan
GO:0033209
all species →		Biological Processtumor necrosis factor-mediated signaling pathwayInterproscan
GO:0070534
all species →		Biological Processprotein K63-linked ubiquitinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0064.g1.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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