Gene detail

Detailed information of amic_s0064.g15.t2 in Acropora microphthalma

Genomic Location: sc0000064_pilon:356776...395085
NR annotation: XP_015778264.1, PREDICTED: TNF receptor-associated factor 3-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0064.g15.t2

ATTACATTCGTTTCCCAGGTTAGCTTTGTGGTAGCAAAGGTTTCTTTGATAGTGCACTGGCAAAACCCTTCAAAATCAAGCATAACAGTGTGCATCGGGATTTCTCCGATTGGCTCTACCGCGGCAATTAACATGCCTGGATATATTCTGGCTCCTATTGATCGATTAAAAATCGACGAAAACAGTTTATGTCCGAAATGCGATGGACTTTTGAGAGAAGCTGTGCAGACAATAGCATGTGGTCATAGATACTGCAAATCGTGTGTGGATATAATTCTAAGGCAGGAAGTTGGAAAATGTGTCATTGATGGATCAGTGATTTCCGAAGAACAGATTTTTGTCGACCGATTTGTAGAACGTGAGATTCAGTCACTCATAGTCCATTGCGAAAATCATGAACATGGCTGCGCTTGGAAAGGGGAACTTAGGAATCGAGAGGCTCATGATACCGTATGTGAATTTATCACCGTACCCTGCGTACACTCAGATTGTGGTCAACTGGTAACTAGAGTAAATCTTGCGCAACATCTTGAGACGGAATGCCAGTACAGGATGGAAATATGCGATTACTGCGAATCTTCAGTTGTGTTCGCTGCTATGCAGGAGCATCAAGATAATGAATGTCCATCTGTACTGATTACTTGCCCATCATGCAACAGGGAAGGTATACCACGAATTCAGAGCTCCACCGCGGCAATTAACATGCCTGGATATATTCTGGCTCCCATTGATCGATTAAAAATTGACGAAAACATTTTATGTCCGAAATGTGAGAGACTTTTGAGAGAAGCTGTGCAGACAATAGTATGTGGTCATAGATACTGCAAATCGTGTGTGGATATCATTCTGAGACAGGAAGTTGGAAGATGTGTAATTGATGGATCAGTAATATCTGAAGAACAGGTTTTTGTCGACCGATTTGTAGAGCGTGAGATCCAGTCATTCGTAGTCCACTGCGAAAATCATGAACATGGCTGCCCATGGAAAGGGGAACTTAGGAATCGAGAGGCTCATGATACCGTATGTGAATTTACCGCCATACCCTGCGTACAATCAGATTGTGGTCAACTGGTAACTAGAGTAAATCTTGCACAGCACCTTGAGACGGAATGCCAGTACAGGATGGCAAAATGCGATTACTGCAAATCTTCAATTGTGTTCGCCGCTATGCAGGAGCATCAAGAAAATGAATGTCCATCTGTACTGATTACTTGTCCATCATGCAACAGGGAAGGTATACCACGAATTAAGATAATGAAGTTACACGAAAGGAAACTCCACGAAGAGACGAATGCACCTGGTCATCTGATGCTTCTTTTTCAAACTGTTCTGCAACTTTTCCCTGGAATCAATACGCACGATTTAAGACATATGAATAAGAATGGCACAAGGTTTCCTTCCCAAACAGAGTTGGAACACTTTGCGAAACAAGTTGAACGTATATTGAAAGAAAATGGCGAATTGAAGTCAAAAATAGCTCAGCAAGAGGAGAGAATACAGCTCATGGATAGTAAACAGCAAAATTTGTCAAGCTCAGCATCCGTTGAGAATGCGCACAATCTTTTAGAGACGGAGCTCTCACGAAAGTTAAACAGTGAAGAAGCGAAACTGGCTGATCTGGAGTTTTTGCTATTTGAAGGAAATAAAGTCAACGAAGATCTTCAGCGTCAGGTTTCCAAAATAGTGAAAGAACAAGAAGCTTTCAGTGGAACAGTTGACAGGCTTCAAGGACAGGTCGCGTCCATGGGTCCTCCACTGTCTTTGCATAATGTGATGATGGGCTATTCCCAGTTGAATGATCACACAAATCAGCAGCAAGTAACCAGCTATAACGGAGTCTTGATTGCAAGCATGTCCACGAATGTTGAAGCTAACGATGAAGGTTCATTCAAGGATGTCTTGTTGGATGTTAGGAGCGATGAATCATCCAACAATTGGTAACACAAATTCCACACGAATTTGTGCACCTAATCAAATGCTTTCGGAAAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000128 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF02176 all species →	zf-TRAF	TRAF-type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR001293 all species →	Domain	Zinc finger, TRAF-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131 all species →	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005164 all species →	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0009898 all species →	Cellular Component	cytoplasmic side of plasma membrane	Interproscan
GO:0033209 all species →	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0070534 all species →	Biological Process	protein K63-linked ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03175	TRAF6; TNF receptor-associated factor 6	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.