Gene detail

Detailed information of amic_s0064.g28.t1 in Acropora microphthalma

Genomic Location: sc0000064_pilon:552568...555639
NR annotation: XP_015765612.1, PREDICTED: uncharacterized protein LOC107344471 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0064.g28.t1

ATGTTTCTTGCGTTTTGTTTGGTCCACCAAAATCATTCAAGTGAAAACACAACAACGGCCAGGCCACACCAGGTTGATAAGCCACGAATACCATCGTTGGTCTGCAACGAAAAATTGTCCTGTCGCAACAGATGCAACGAGACGACAGAAGGGAATGATCTTTCAAGCGATCCTGCGCATTGCCACTGCGACATTGCCTGTACGAAGTACCATGACTGCTGTGCAGACTTCGTTCAATTTTGCCAGACGAATAATTCAGTGAATCAAGGAAATGAAAGTATTGCTTATACATGCTTTAAATTATCTACCGAACCCGGACAGACGCACGGCGTTTTTATGATCTCAACATGTGCAAAAGGCTGGATTGACGAAGACGTGCGTGCTCAGTGTTTAGCAGGATCAAGTCACGGAGAAAATCGAACATTTACCTCTGCCAACATCTTGGAAGATATTCCTGTGAGTATTCTTTCCTACGATCATCTTCCACCGAGTTACAGAAATATTTATTGTGGTTTTTGCAACGGCGAAAGCGATATCCTTCTTACCTTCTGGACGTTGAAATTTAGATGCAACATCCAACCACCCTCAGATCACAACGCTACTCAGGTACTGGACTTTTTGTTAAAGTATTGTCCAAATAGGATCGTCAAACCGGGTCAAGGTTTTGGTGTTCGCACTTGTGTACAAACGGTATCCACTTGTCGTATCTCTAATCAAAGTAACATTAAAAGCAAGTGCTTAGGCGGCCCAAGCGGAGTTGTCTATTCCAAAGAGACGAAGGAAAACTTCAAAAATTACTACTGCTTGCTTTGCAATGGTTTGTCAACAAACGATGTCAAATGTGGACCTCGAATTAAAGACAATATCTTTAATCCCAAATCGTTCGAAATCGTTCTAGAATTCAACCCCGAAAGCAAGCAAGTCACCGAACCAACAGTTACCCCCACATGTGCAACAGGCCAAGTTTATGATCCCCATCTCGAAACTTGTGAGCCTGGCATTTATACGCCCCTTCCCCCTTCACGTGCTATTCGTGATAAATATCGTATAAAACTTTGGATGAACCCAGTGGATAGCTTCATTGTACTCATATCTTCAAATCAATTTAGCAACGCACTTTGCACAGCATTTTCCCTGGATCCATCACAGATTGACGAAATATCAATTGGCATCGAAGACTTGTCTCTCGCTGTGACTTTTAATCTGTACGCTGGCGGCGCTGCTCCCTCACCCTCCCAAGACAAGGTGGCACAAGAGGAAACCCTCGAGATAACGCTCCTCCTTAACTTCAATAACTCCTTCAAACTCACCATCCAGGACAAGAGATGGGATGTCCTTCGAGTTACTCAAAGACAATTAACCTGCGCTCAATCAGAAGAATTTCTTCCTGGAGATTTTATTCCTCCTACAGATCCAAAAAGCTTTGCTATCGTGAGAAAAACTGGGCAACAAGTTCCTCCAAACAGGTACTTTCTTCTCAAAGATAGCAAGACTGGCAATGAATCATTGTTTGTGTGCAGCTCTAAGTTCCTCGTCATGTGCCCTTTCTTGTTGCTTCCCGTTAGAAGCTCCGACTATAAGTTATTTTCCAACAAAAGTTTGCAACACATTGCCACAGGTCGATTATACACAACTGGAGATTACGAACTAAATGACAAAACGGCCTTGATTTGTACAAACTATACAACAGAAAATAACTCAACCATCCTTGTGCCTCACGCTAATGTAACTGTCTTTGGGCAATCTGATAGACCTTTTCTCTGGTACTTCACGGTTGTTGGATTTTCCGTGTCAATTGTGGCTCTGATTCTGACTTTGATAGTACACTTCATTGTAAGTGATCTCCGATCACCTCTTCCCGGAAAGAATCTCATGAGTTTATGTATGGCCCTTTTCCTCGCACAATTTATGTGGCTATTCGGCTCCGGTGACACTGATCAGCCGATCTTTTGTACTGTGGTTGCAGCTGTCCTGCATTACCTCTTCCTCGTTTCCTTTGCCTGTACTGCCGTTATAGCATATGACACTCGTCGAACCTTCTCCGTTCAGATGTCCAAAGCTCCCGGTCGGTCAAACGGGGAAGGGAACCTTCGATTCCTGACGTACACGTGCATTGCATGGGGTCTTCCGATGATTTATGTGGGCTCCTGTTTCCTCCTTGATAACTTCCGAGTGGTTGGGATCGGATACGGAGACGAAGAGGCTTGCTGGTTGGCCAAAGGTAATGCAAAGATCGTGGTCTTTCTCACTCCAATAGCTTGCGTACTTCTGTACAACGTTGCAGCGTTTTCCCAAACCATATGGGCTATCAACACCGCTAGGAAGCAAACAAACAGAGTCAAAGCGAAATCAAGTCGACGAGACCGTGGAGCCGTCGTCAAAGTCTACATCCGCCTCCTTACCCTAATGGGTTTTACTTGGTTTTTCGCTTTCACGGCTGAGCTCATACACAAGACGATGATCTACCCCTTTGTGGTGCTAACATCTCTTCAGGGTGTTTACATCTTCGTGGCCTTTGTTTGCAAGACCCGAGTACTCAAACTGATAAGAGATGCTTTTCAAATGTCTAAGAGAGATGTTCTTGCTTCTACACAAAACTCCGCTAGCACGCTTAGCAAAAGCTTCCATCCAAACCACTCCAGATCGGAAACGGAGGAAACGCATATGTAG

Transcript

amic_s0064.g28.t1

AATCATTGCTTGGCAACAGAGATAAACATTTCTCCGCTTTGAGATATAAGATTAGTGTAGACAAGCCTATGTTTTAATCAAGTACTAAAGAGACAGACAGCAACTTCAAATCATTATGGTGGGAAAAATTTACACACATTTCGTGATTTCTGTCATGTTTCTTGCGTTTTGTTTGGTCCACCAAAATCATTCAAGTGAAAACACAACAACGGCCAGGCCACACCAGGTTGATAAGCCACGAATACCATCGTTGGTCTGCAACGAAAAATTGTCCTGTCGCAACAGATGCAACGAGACGACAGAAGGGAATGATCTTTCAAGCGATCCTGCGCATTGCCACTGCGACATTGCCTGTACGAAGTACCATGACTGCTGTGCAGACTTCGTTCAATTTTGCCAGACGAATAATTCAGTGAATCAAGGAAATGAAAGTATTGCTTATACATGCTTTAAATTATCTACCGAACCCGGACAGACGCACGGCGTTTTTATGATCTCAACATGTGCAAAAGGCTGGATTGACGAAGACGTGCGTGCTCAGTGTTTAGCAGGATCAAGTCACGGAGAAAATCGAACATTTACCTCTGCCAACATCTTGGAAGATATTCCTGTGAGTATTCTTTCCTACGATCATCTTCCACCGAGTTACAGAAATATTTATTGTGGTTTTTGCAACGGCGAAAGCGATATCCTTCTTACCTTCTGGACGTTGAAATTTAGATGCAACATCCAACCACCCTCAGATCACAACGCTACTCAGGTACTGGACTTTTTGTTAAAGTATTGTCCAAATAGGATCGTCAAACCGGGTCAAGGTTTTGGTGTTCGCACTTGTGTACAAACGGTATCCACTTGTCGTATCTCTAATCAAAGTAACATTAAAAGCAAGTGCTTAGGCGGCCCAAGCGGAGTTGTCTATTCCAAAGAGACGAAGGAAAACTTCAAAAATTACTACTGCTTGCTTTGCAATGGTTTGTCAACAAACGATGTCAAATGTGGACCTCGAATTAAAGACAATATCTTTAATCCCAAATCGTTCGAAATCGTTCTAGAATTCAACCCCGAAAGCAAGCAAGTCACCGAACCAACAGTTACCCCCACATGTGCAACAGGCCAAGTTTATGATCCCCATCTCGAAACTTGTGAGCCTGGCATTTATACGCCCCTTCCCCCTTCACGTGCTATTCGTGATAAATATCGTATAAAACTTTGGATGAACCCAGTGGATAGCTTCATTGTACTCATATCTTCAAATCAATTTAGCAACGCACTTTGCACAGCATTTTCCCTGGATCCATCACAGATTGACGAAATATCAATTGGCATCGAAGACTTGTCTCTCGCTGTGACTTTTAATCTGTACGCTGGCGGCGCTGCTCCCTCACCCTCCCAAGACAAGGTGGCACAAGAGGAAACCCTCGAGATAACGCTCCTCCTTAACTTCAATAACTCCTTCAAACTCACCATCCAGGACAAGAGATGGGATGTCCTTCGAGTTACTCAAAGACAATTAACCTGCGCTCAATCAGAAGAATTTCTTCCTGGAGATTTTATTCCTCCTACAGATCCAAAAAGCTTTGCTATCGTGAGAAAAACTGGGCAACAAGTTCCTCCAAACAGGTACTTTCTTCTCAAAGATAGCAAGACTGGCAATGAATCATTGTTTGTGTGCAGCTCTAAGTTCCTCGTCATGTGCCCTTTCTTGTTGCTTCCCGTTAGAAGCTCCGACTATAAGTTATTTTCCAACAAAAGTTTGCAACACATTGCCACAGGTCGATTATACACAACTGGAGATTACGAACTAAATGACAAAACGGCCTTGATTTGTACAAACTATACAACAGAAAATAACTCAACCATCCTTGTGCCTCACGCTAATGTAACTGTCTTTGGGCAATCTGATAGACCTTTTCTCTGGTACTTCACGGTTGTTGGATTTTCCGTGTCAATTGTGGCTCTGATTCTGACTTTGATAGTACACTTCATTGTAAGTGATCTCCGATCACCTCTTCCCGGAAAGAATCTCATGAGTTTATGTATGGCCCTTTTCCTCGCACAATTTATGTGGCTATTCGGCTCCGGTGACACTGATCAGCCGATCTTTTGTACTGTGGTTGCAGCTGTCCTGCATTACCTCTTCCTCGTTTCCTTTGCCTGTACTGCCGTTATAGCATATGACACTCGTCGAACCTTCTCCGTTCAGATGTCCAAAGCTCCCGGTCGGTCAAACGGGGAAGGGAACCTTCGATTCCTGACGTACACGTGCATTGCATGGGGTCTTCCGATGATTTATGTGGGCTCCTGTTTCCTCCTTGATAACTTCCGAGTGGTTGGGATCGGATACGGAGACGAAGAGGCTTGCTGGTTGGCCAAAGGTAATGCAAAGATCGTGGTCTTTCTCACTCCAATAGCTTGCGTACTTCTGTACAACGTTGCAGCGTTTTCCCAAACCATATGGGCTATCAACACCGCTAGGAAGCAAACAAACAGAGTCAAAGCGAAATCAAGTCGACGAGACCGTGGAGCCGTCGTCAAAGTCTACATCCGCCTCCTTACCCTAATGGGTTTTACTTGGTTTTTCGCTTTCACGGCTGAGCTCATACACAAGACGATGATCTACCCCTTTGTGGTGCTAACATCTCTTCAGGGTGTTTACATCTTCGTGGCCTTTGTTTGCAAGACCCGAGTACTCAAACTGATAAGAGATGCTTTTCAAATGTCTAAGAGAGATGTTCTTGCTTCTACACAAAACTCCGCTAGCACGCTTAGCAAAAGCTTCCATCCAAACCACTCCAGATCGGAAACGGAGGAAACGCATATGTAGCATAGTGCACTGCGAGTAGCTCTCAAAGTAGAACTCTTACAATGATTGTATTGTTCATTTCGACAGAAAAGAAAGGCCGTCTTAAAGTAGAAATTTTAGAATGCTACTTATATGTGATTTTATTTTCTAAATTAGATCAGAACTCTGATTGATGTAAAGTGTTGTTAACTGCAAACGAAATTGTATTGGGAAACATATTCACGAAAAACATGAAAACGTATCATATGTAATAAACCGTTCATAAAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NYQ6	Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens OX=9606 GN=CELSR1 PE=1 SV=1
O35161	Cadherin EGF LAG seven-pass G-type receptor 1 OS=Mus musculus OX=10090 GN=Celsr1 PE=1 SV=3
Q86SQ3	Putative adhesion G protein-coupled receptor E4P OS=Homo sapiens OX=9606 GN=ADGRE4P PE=5 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000178 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01033 all species →	Somatomedin_B	Somatomedin B domain	Family	Interproscan
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001212 all species →	Domain	Somatomedin B domain	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR036024 all species →	Homologous_superfamily	Somatomedin B-like domain superfamily	Interproscan
IPR053231 all species →	Family	G-protein coupled receptor LN-TM7	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45902 all species →	LATROPHILIN RECEPTOR-LIKE PROTEIN A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04599	MTH; G protein-coupled receptor Mth (Methuselah protein)	-	G protein-coupled receptors	ko04030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.