Gene detail

Detailed information of amic_s0064.g42.t1 in Acropora microphthalma

Genomic Location: sc0000064_pilon:830465...852917
NR annotation: XP_015776640.1, PREDICTED: uncharacterized protein LOC107354672 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0064.g42.t1

ATGGCACAGGATGGAACATGGGGAGAAAATGTTATTCTTTTTGCTGCAGCAAACTGTTATAAGTGTGATATCCGTGTGATTATATTAAACAGTGTTCCAAGTTACGACTGGACAGTCAGACCAGATCCACCAATCAGTGATGCTGTTCAACTGGTGCTGGGACATGTTGTCAAGGAACACTACGTTAGTCTCATACCCACAATGCCAGTTGGTGATAATTTGGTTTCTGAAGCCGTGACAAAGAATGTCCTTTTACTAGAGGAACTTTCAAAGCATCTGGACAAAGAGAGTAAAGTTTTCAAGTCTTGGGAGCATTTGGCTTTTGCTTTGCAAATACCTCCGACGGAGATTAAAAAAATTGGCTTTTACTCTAAACACAGCGTAACTGAGGACTTGCTTGGTGTTATTTCTGATGCTCATGATGTAAAAGTTGGGGAGTTAAAAGAGATGCTCAAGGATATGAACAGAAATGATGTCATAAAGGATTTACAAGAAGCTGGCTTCACTGATGATGATTGCCTTTTAAGTGACTTAGTGTCTAAGAACCCCAAATTCATTGCTCTTCTCTCATCCAAGCTTGATGTGGAATCCATTGCTAACTGGAGGCTTCTTGCAACTAAGTTTGGAATAGAAAGGCAAATATCAAATCAATTTGGTTTGTATGGAGCTGGGCCCACGGAAAATCTGTTTTTATACATTCAGACTGATGAAAAGCTTCGTTGTTTGACAATGGGAGAGCTTCGCAAACACTTTTGTGATATGGGGCGAATGAAATTGGTTAGTTTCTTGGAAAAGTCTGGTTTTAAAGAAGATGATACCCGCTTGGTGAGGAATGAAGTTGTGATTGGCTCTGACCTTTTAGCGGACATTGCAAAGAAAACTTTCCTCAAGTTGCATCGAGATGCTGACAAGCACCAAAAGAAAGGTGGTCTGTCACATGATTTAGAGACAAATGCTTCTATTAAGGGCTTTGAGATTGTTCGCAATGATGGAAAAGGAAATTGTATGTTTCATGCTCTCTGTGATCAGTTGAAATACAAGAAGCACTTGGAAATCTCTCATCAAGACCTTAGAAAAAATTTAGTGAAGTATCTCCATGAGCATCCTAAATTGTCAGATGACACTGAACTTGCTGGCTTTATAGTCACAGATGGTTTTCCATCGTGGACAGAGTATCTTGGAAAGATGGCACAGGATGGAACATGCGGAGAAAACGTAATTCTTTTTGCTGCCACAAACTATTACAAATGTGATATCCGTGTGATTAGTAGTGTTCCAAATCATGATTGCACCATCAAACCAGTTCAACCAATCAGTGATGCTGTGCAACTGGTGCTGGGACATGTCGTTGAGGAACACTACGTTAGTCTCAGACCCTCAATGTCAGTTGGTGATAATTTGGTTTCTGAAGCCGTGACAGAGAATGCCCTTTTACTAGAGGAACTTTCAAAGCATCTGGACAAAGAGAGTAAAGTTAACAAGTCTTGGGAGCATTTGGCTCATGCTTTGCAAATAACTCCGACGGAAATAAAAAAAATTGCCTTTTACTCTAGACTGAGCCCAACTGAGGACTTGTTTGATGTTATTTCTGATGCTCATGATTTAAAAGTTGAGGAGTTAAAACAGATGCTCAAGTGTATGTACAGAAATGATGTCATAAAGGATTTACAAGAAGCTGGCTTCACTGATGATGATTGCCTTTTAAGTGACTTAGTGTCTAAGGACCCCAAATTCATTGCTCTTCTCTCATCCAAGCTTGATGTGGAATCCATTGCTAACTGGAGGCTTCTTGCAACTAAGTTTGGAATAGAAAGGCAAATATCAAATCAATGTGGTTTGTATGGAGCTGGGCCCACGGAAAATCTGTTTTTATACATTCAGACTGATGAAAAGCTTCGTTGTTTGACAATGGGAGAGCTTCGCAAACACTTTTGTGATATGGGGCGAATGAAATTGGTTAGTTTCTTGGAAAAGTCTGGTTTTAAAGAAGACGATAGTCGCTTGGTGAGGAATGAAGTTGTGGATGGCTCTGACCTTTTAGCAGACATTAGTAAACAACTTAACATAGAATCTCGAACTGTTAAGAATTGGTGCAGTTTAGCTAACAAACTGGAAATCCCTCCTAAAGTCTATTGCGCATTTGACACATCGGAAGCCAAAGTAAAGAGTTCCACCAAGGAGATGTTTAAATGGCTTGCTCAACAGAGTCCAAATCTCAGTATTGATGATTTGTTAGCTGCATTAAAGAAAATTAGACGCTTTGATTTGGTAGATCTTGTGAGAGAGGAAACTCAAAGTTATTTTGCAAAGAAAACTTTCCTCAAGTTGCAAGAAATGCATCGAGATGCAGACAAGCATGAAAAGAAAGGTGGTCTGTCAAATGATTTAAATACAAATGCTTCTAACAAGGGATTTGAGATTGTTTACAATGATGGAAAAGGAAATTGCATGTTTCATGCTCTCTGTGATCAGTTGAAATACAAGAAGCACTTGGAAATCTCTCATCAAGACCTTAGAAAAGATTTAGTGAGGTATCTCCATGGGCATCCTAAATTGTCAGATGGCACTGAGCTTGCTGGCTTTATAGTCACAGATCGTTTTCCATCATGGACAGAGTATCTTCGAAAGATGGCACAGGATGGAACATGCGGAGAAAACGTAATTCTTTTTGCTGCAGCAAACTACTACAAGTGTGATATCCATGTGATTAGTAGTGTTCCAAATCATGATTGCACCATCAGAGCAGTTCCACCAATCAGCGATGCTGTGCAACTGGAGCTGGGACATATCGTTGAGGAACACTACGTTAGTCTCAGACCCTCAATGTCAGAAGATCGAGAGGGTCAGCTTCAACAGTCTCCTTCCAACTTTCCACAACTTGTCATTCAGGGACAGCATCAACCAGAAACCAATGGGAAGGAAGATTGTGCGTTGGGCAGTGGGACTCCTTCCTTGTAG

Transcript

amic_s0064.g42.t1

GTTAAATGACACTGAGCTTTCTGGCTTCCTAGACAAAAAACATTATCCATCATGGACAGAATATCTTAAAGACATGGCAAAGGATGGAAACTGGGGAGACCATGTAATTCTTTTTGCTACGGCAAACTGTTTTAAGTGTGATTATCTTGCACACAAGACCAACGGATAACATTTTTATGATGGTAACTGTAGTAACTCGTCCTTTGTACTTGCCTTGCAGTCAAATGGCACTGAGCTTGCTGGCTTTGTAATAGAAGATCGTTTTCCATCATGGGCAGAATATCTTCAAAAGATGGCACAGGATGGAACATGGGGAGAAAATGTTATTCTTTTTGCTGCAGCAAACTGTTATAAGTGTGATATCCGTGTGATTATATTAAACAGTGTTCCAAGTTACGACTGGACAGTCAGACCAGATCCACCAATCAGTGATGCTGTTCAACTGGTGCTGGGACATGTTGTCAAGGAACACTACGTTAGTCTCATACCCACAATGCCAGTTGGTGATAATTTGGTTTCTGAAGCCGTGACAAAGAATGTCCTTTTACTAGAGGAACTTTCAAAGCATCTGGACAAAGAGAGTAAAGTTTTCAAGTCTTGGGAGCATTTGGCTTTTGCTTTGCAAATACCTCCGACGGAGATTAAAAAAATTGGCTTTTACTCTAAACACAGCGTAACTGAGGACTTGCTTGGTGTTATTTCTGATGCTCATGATGTAAAAGTTGGGGAGTTAAAAGAGATGCTCAAGGATATGAACAGAAATGATGTCATAAAGGATTTACAAGAAGCTGGCTTCACTGATGATGATTGCCTTTTAAGTGACTTAGTGTCTAAGAACCCCAAATTCATTGCTCTTCTCTCATCCAAGCTTGATGTGGAATCCATTGCTAACTGGAGGCTTCTTGCAACTAAGTTTGGAATAGAAAGGCAAATATCAAATCAATTTGGTTTGTATGGAGCTGGGCCCACGGAAAATCTGTTTTTATACATTCAGACTGATGAAAAGCTTCGTTGTTTGACAATGGGAGAGCTTCGCAAACACTTTTGTGATATGGGGCGAATGAAATTGGTTAGTTTCTTGGAAAAGTCTGGTTTTAAAGAAGATGATACCCGCTTGGTGAGGAATGAAGTTGTGATTGGCTCTGACCTTTTAGCGGACATTGCAAAGAAAACTTTCCTCAAGTTGCATCGAGATGCTGACAAGCACCAAAAGAAAGGTGGTCTGTCACATGATTTAGAGACAAATGCTTCTATTAAGGGCTTTGAGATTGTTCGCAATGATGGAAAAGGAAATTGTATGTTTCATGCTCTCTGTGATCAGTTGAAATACAAGAAGCACTTGGAAATCTCTCATCAAGACCTTAGAAAAAATTTAGTGAAGTATCTCCATGAGCATCCTAAATTGTCAGATGACACTGAACTTGCTGGCTTTATAGTCACAGATGGTTTTCCATCGTGGACAGAGTATCTTGGAAAGATGGCACAGGATGGAACATGCGGAGAAAACGTAATTCTTTTTGCTGCCACAAACTATTACAAATGTGATATCCGTGTGATTAGTAGTGTTCCAAATCATGATTGCACCATCAAACCAGTTCAACCAATCAGTGATGCTGTGCAACTGGTGCTGGGACATGTCGTTGAGGAACACTACGTTAGTCTCAGACCCTCAATGTCAGTTGGTGATAATTTGGTTTCTGAAGCCGTGACAGAGAATGCCCTTTTACTAGAGGAACTTTCAAAGCATCTGGACAAAGAGAGTAAAGTTAACAAGTCTTGGGAGCATTTGGCTCATGCTTTGCAAATAACTCCGACGGAAATAAAAAAAATTGCCTTTTACTCTAGACTGAGCCCAACTGAGGACTTGTTTGATGTTATTTCTGATGCTCATGATTTAAAAGTTGAGGAGTTAAAACAGATGCTCAAGTGTATGTACAGAAATGATGTCATAAAGGATTTACAAGAAGCTGGCTTCACTGATGATGATTGCCTTTTAAGTGACTTAGTGTCTAAGGACCCCAAATTCATTGCTCTTCTCTCATCCAAGCTTGATGTGGAATCCATTGCTAACTGGAGGCTTCTTGCAACTAAGTTTGGAATAGAAAGGCAAATATCAAATCAATGTGGTTTGTATGGAGCTGGGCCCACGGAAAATCTGTTTTTATACATTCAGACTGATGAAAAGCTTCGTTGTTTGACAATGGGAGAGCTTCGCAAACACTTTTGTGATATGGGGCGAATGAAATTGGTTAGTTTCTTGGAAAAGTCTGGTTTTAAAGAAGACGATAGTCGCTTGGTGAGGAATGAAGTTGTGGATGGCTCTGACCTTTTAGCAGACATTAGTAAACAACTTAACATAGAATCTCGAACTGTTAAGAATTGGTGCAGTTTAGCTAACAAACTGGAAATCCCTCCTAAAGTCTATTGCGCATTTGACACATCGGAAGCCAAAGTAAAGAGTTCCACCAAGGAGATGTTTAAATGGCTTGCTCAACAGAGTCCAAATCTCAGTATTGATGATTTGTTAGCTGCATTAAAGAAAATTAGACGCTTTGATTTGGTAGATCTTGTGAGAGAGGAAACTCAAAGTTATTTTGCAAAGAAAACTTTCCTCAAGTTGCAAGAAATGCATCGAGATGCAGACAAGCATGAAAAGAAAGGTGGTCTGTCAAATGATTTAAATACAAATGCTTCTAACAAGGGATTTGAGATTGTTTACAATGATGGAAAAGGAAATTGCATGTTTCATGCTCTCTGTGATCAGTTGAAATACAAGAAGCACTTGGAAATCTCTCATCAAGACCTTAGAAAAGATTTAGTGAGGTATCTCCATGGGCATCCTAAATTGTCAGATGGCACTGAGCTTGCTGGCTTTATAGTCACAGATCGTTTTCCATCATGGACAGAGTATCTTCGAAAGATGGCACAGGATGGAACATGCGGAGAAAACGTAATTCTTTTTGCTGCAGCAAACTACTACAAGTGTGATATCCATGTGATTAGTAGTGTTCCAAATCATGATTGCACCATCAGAGCAGTTCCACCAATCAGCGATGCTGTGCAACTGGAGCTGGGACATATCGTTGAGGAACACTACGTTAGTCTCAGACCCTCAATGTCAGAAGATCGAGAGGGTCAGCTTCAACAGTCTCCTTCCAACTTTCCACAACTTGTCATTCAGGGACAGCATCAACCAGAAACCAATGGGAAGGAAGATTGTGCGTTGGGCAGTGGGACTCCTTCCTTGTAGTGTTCACAGCAGGATTTGTAAAAGAACTTAACTTTAGACGTGACTCTTTTTATGATTTTGGAATGGTAGAAGAAAAACttgtggctaaattatagaggacggccactcatttccatatcattgcataacaaaagctgttattgttatctgtctcgttcaacaaaagattgtgaccaatttgcatgtgctggccctgtatggccctgaatattctataattgctccAAGCTTGGCATGAATAGATGTGACAGGGTCCCTAGACCTATAGTTTCACAGTTTTTAGTTATAACCAGAAAGGCATTACTTTTTTTTAGAGTACTTCTAATATTTTTTGCGCTTAGGAATTTTCTGGTTTGATTCAGCAAGCTTATACATCGCTGGAAATGCTGATGCCTGTGCCCGCAAACTCAAACATTATTGCTTACAGGCCTATATTTGGATATTCGGTTTCTTGGTTTTTCTTTTCGGTAGATTGTTTTAattcgttaataacatagaggacaaaattattgaatgctgattggtcaatgaagagagtgttttttcttagttttgctttgtgaagagggcaaaattacttgctcacgattggtcctcaggttgcctggcaacagcttcttcaatcgagaagttgtttttctgtcacaatggcacctcgtttcgagatagttgacgaggaatatagcgaagaattaaagggcaagagcgaaaatgaaaacacgaagaatagcacggaatggtgaaagaatgttttcaaaaagtgtgccaatgaaagaaacttgcaagcaaatttagaggagtacgagaacgatgtcctcgaccaacgactgtcgcagttttgggcattcagaaattcagtaattttgccctctatgtaatcgcaattgatcctcgtaaaattaagcagaagttgctgaaattgccgcggaacggttgctcagttggttgagcaacggtttgccctgcgggaggtcgtgaccaactctcagggtcttaaaataactgaggagaaggtgctgccttgtaattacatctgcaaatggttaagactttcaaatcttctcggataaggcctagaaaccgtaggccccgtctcacgacccttgaatgttcacaattctgtgggacgttaaagaacccacacactattcgaaaagagtagggcatgaagttcccggtgttgtggctgtcctctgtgaaagtatagcaggtccacagaagctaatagctgccaaaaaactcaacctgctcaatcaaataaaagaaagaaagaAAAATccctcgtcgccgcgcgactcgggcaatttcagcaacttctgaatacacgcctgatattaatccttaattatactcgcccccatgtgattacctatactTATAACCTTATCTTGTGAGTCAATCGAATTAACCTAAAGAAATCGTGACGCTTCGTTTTCACTGTGGTTTGGCAACATACCTCTTGCTGTTTTGTAAGGTGAAAAAATGTTTAATATTTCGTAttaatcataaccattaaaattttctcaaattt

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001014 (this species only)
Ubiquitin family	DUB\|OTU\|OTU · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050704 all species →	Family	OTU domain-containing ubiquitin thioesterase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12419 all species →	OTU DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0064.g42.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.