Gene detail

Detailed information of amic_s0064.g62.t1 in Acropora microphthalma

Genomic Location: sc0000064_pilon:1165078...1176595
NR annotation: XP_029185045.2, bromodomain-containing protein 3-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0064.g62.t1

ATGGAAACTCAAGGCCATCCGACAATCCAAAGCTTGCAGAACCCTCTAACAAACCTTATCGAACGGCCCAGCGCAGCTTTACAGACTGGCCTCAGTAATGAACATAACTCTGATGATTCATTGAATGGATTGCGCTCAGAGGCAAGCCCTGAGGGGCTCGGAAAGCGAGTAAGACGTTTATCTCACAAGTACGACGGTTTTGAACAACAAACAGTGCGAGGAATGGCTCAAACTCAATCAACCAGCCAAGAGCCTAAAAGCATTCGAACAACCAACCAACTACAGTATTTGTCAAAAACGATCATGAAGGCAATGTGGCGGCATCCATATTCCTGGCCGTTTCACGACCCTGTGGACGCTGTGAAACTGAATTTACCGGACTATTACACGATTATAAAGAAACCCATGGACATGTCCCAGATAAAGAAGAAACTAGAAAACCACGAGTATACATGTAGTCAGGAGTGCATAGATGATTTTCGGCTCATCTTTAATAATTGCATCACTTACAACAAGCCTGGAGAGGATGTAGTGCTTATGTGCCAAACAATGGAAAAGGTGTTCAATCAGAAGCTTGCTACAATGCCCCCTGAGGAGTATGAAATGATTCTTGGGCCGAAAAAGAAAGCTGAAACGGGAGGATCAGCTGCAAAAAGAGCTAAAAGAGGTGGCTCTGCAGTCAAATTGGAGCAAACAACTGTTGCTCCAGACAGTACCCCCATGATGAGCTTGTCATATCCCACCCCACCAGTAGCTGTCACAGCCACAACTGCACTCCCAACTCCAGTGGATGCAACTACTGTGTTACCATCACCGGCTATTTCTGCTGCTCCAGCCTTGCCCTCTGCTGTTCAGCCTGCCAAGGTTAAGAAAGGGGTGAAAAGGAAAGCTGACACCACAACTCCTACTACACCTGTTAGTGGAATGGTTGAGCCACCCCTCCCTGTTAAAACAAAGGCAGCAAAGATACCAACTCGTAGGGAGTCGACAAGAACAGTAAAAAAACCAAACCGTGATTTACCTGAAGAGCCTCAAATGGCACGTGGAAAAAAGAAACCCCTCTCTGAGCAGCTGAGATACTGCAGTAACATAATAAAGGAATTGTTTTCAAAGAAACATGCGACATATGCTTGGCCATTTTACAAGCCTGTAGATGCCTCTGCCCTTGGTTTACATGATTATCATGACATAATCAAGCAGCCAATGGATATGGGCACAATAAAGGTTAAAATGGAAGGAAGAGATTACAATTCCTCATCTGAATTTGCTGCTGATGTTCGCCTAATGTTTAGTAATTGCTATAGATACAATCCTCCAGATCATGATGTTGTCAAAATGGCAAGGCAACTACAGGATGTTTTTGAAATGAAGTTTGCCAAAATGCCAGAGGAGCCCGAGCTCCCAGCTGGCCCTGTAATCGAAGCTGCTGAACCTGAACTGGAGTCTGCTGCCACACCTCCTTCATCTTCACCTGCATCCGAAGACAATGAGACTGATAGGGCTGAGAAGCTTTCCCAACTTCAACAACAGCTGATATCTGTCCATGAACAACTCAGCAAGTTAACTGGAGAAACTGTTATCGGGCCAAACAACAAACCTAAGAAGAAGGTTGAGAAAAAACCTGCGGCCAAGAAAGAAGTCAAACCAGCTGTGTCGTCACAGTCAAAAAGTCAAGCAAAACAGAAGTCGTCAGGAAAAACTCAAACTCCACAAGCTCAACCAAAAGCTGAGAAGTCTGCAAAGAAACAGTCTGCATCCAAACGGTCTGCTAATAGCAAGATTGCAGCCAAGAAGAAGACAATGGAGGTGGATAGCGATGATGAAGAGGATACTGCCAGACCCATGACATATGATGAAAAAAGACAGCTTAGCCTTGATATCAATAAACTTCCAGGAGACAAGTTAGGGAGAGTGGTAAATATCATCCAGTCCAGGGAACCAGGCTTAAGGGATTCTAACCCTGATGAAATTGAAATTGACTTTGAAACTCTTAAACCATCAACCCTGAGGGAACTAGAGAAATACGTTCAGCAGTGCTTGCGAAAAAAAGTAAAACCTCAAACAAAGAAGGCCAAAAATGCAGAAGAAAGGGAAATTGAACAGGCGAAAAAGAAAGAGGAACTTGAACGAAGGCTTCAGGATGTTAGTGGCAAGCTTGGAGGAACAGGGCAAAAGAAAGCAACAAAGAAAGAATCACAACGAGCAGATCACTCTGTAGTAGATGTTGTTGGCAGTGAGCCTAGGCCATCAAGATTAAGCGAAAGCAGCAGTACTAGTGGAAGTGGTTCAAGCAGTAGTTCTGATTCGAGTTCAAGCTCTGGCTCATCTAGTTCAGCAAGCAGCTCTGACTCTGAATCAGGTAGTGAAGAATAG

Transcript

amic_s0064.g62.t1

GGGTCATTCGAGAATTCAAAAGGGCGGCTTTCGCTCTGTAGCGGGCTGGTGAAACCCGTGAAGGAGGACAAGATTTTTGAGGGATCTGCGGTCGTGCATGGAAACTCAAGGCCATCCGACAATCCAAAGCTTGCAGAACCCTCTAACAAACCTTATCGAACGGCCCAGCGCAGCTTTACAGACTGGCCTCAGTAATGAACATAACTCTGATGATTCATTGAATGGATTGCGCTCAGAGGCAAGCCCTGAGGGGCTCGGAAAGCGAGTAAGACGTTTATCTCACAAGTACGACGGTTTTGAACAACAAACAGTGCGAGGAATGGCTCAAACTCAATCAACCAGCCAAGAGCCTAAAAGCATTCGAACAACCAACCAACTACAGTATTTGTCAAAAACGATCATGAAGGCAATGTGGCGGCATCCATATTCCTGGCCGTTTCACGACCCTGTGGACGCTGTGAAACTGAATTTACCGGACTATTACACGATTATAAAGAAACCCATGGACATGTCCCAGATAAAGAAGAAACTAGAAAACCACGAGTATACATGTAGTCAGGAGTGCATAGATGATTTTCGGCTCATCTTTAATAATTGCATCACTTACAACAAGCCTGGAGAGGATGTAGTGCTTATGTGCCAAACAATGGAAAAGGTGTTCAATCAGAAGCTTGCTACAATGCCCCCTGAGGAGTATGAAATGATTCTTGGGCCGAAAAAGAAAGCTGAAACGGGAGGATCAGCTGCAAAAAGAGCTAAAAGAGGTGGCTCTGCAGTCAAATTGGAGCAAACAACTGTTGCTCCAGACAGTACCCCCATGATGAGCTTGTCATATCCCACCCCACCAGTAGCTGTCACAGCCACAACTGCACTCCCAACTCCAGTGGATGCAACTACTGTGTTACCATCACCGGCTATTTCTGCTGCTCCAGCCTTGCCCTCTGCTGTTCAGCCTGCCAAGGTTAAGAAAGGGGTGAAAAGGAAAGCTGACACCACAACTCCTACTACACCTGTTAGTGGAATGGTTGAGCCACCCCTCCCTGTTAAAACAAAGGCAGCAAAGATACCAACTCGTAGGGAGTCGACAAGAACAGTAAAAAAACCAAACCGTGATTTACCTGAAGAGCCTCAAATGGCACGTGGAAAAAAGAAACCCCTCTCTGAGCAGCTGAGATACTGCAGTAACATAATAAAGGAATTGTTTTCAAAGAAACATGCGACATATGCTTGGCCATTTTACAAGCCTGTAGATGCCTCTGCCCTTGGTTTACATGATTATCATGACATAATCAAGCAGCCAATGGATATGGGCACAATAAAGGTTAAAATGGAAGGAAGAGATTACAATTCCTCATCTGAATTTGCTGCTGATGTTCGCCTAATGTTTAGTAATTGCTATAGATACAATCCTCCAGATCATGATGTTGTCAAAATGGCAAGGCAACTACAGGATGTTTTTGAAATGAAGTTTGCCAAAATGCCAGAGGAGCCCGAGCTCCCAGCTGGCCCTGTAATCGAAGCTGCTGAACCTGAACTGGAGTCTGCTGCCACACCTCCTTCATCTTCACCTGCATCCGAAGACAATGAGACTGATAGGGCTGAGAAGCTTTCCCAACTTCAACAACAGCTGATATCTGTCCATGAACAACTCAGCAAGTTAACTGGAGAAACTGTTATCGGGCCAAACAACAAACCTAAGAAGAAGGTTGAGAAAAAACCTGCGGCCAAGAAAGAAGTCAAACCAGCTGTGTCGTCACAGTCAAAAAGTCAAGCAAAACAGAAGTCGTCAGGAAAAACTCAAACTCCACAAGCTCAACCAAAAGCTGAGAAGTCTGCAAAGAAACAGTCTGCATCCAAACGGTCTGCTAATAGCAAGATTGCAGCCAAGAAGAAGACAATGGAGGTGGATAGCGATGATGAAGAGGATACTGCCAGACCCATGACATATGATGAAAAAAGACAGCTTAGCCTTGATATCAATAAACTTCCAGGAGACAAGTTAGGGAGAGTGGTAAATATCATCCAGTCCAGGGAACCAGGCTTAAGGGATTCTAACCCTGATGAAATTGAAATTGACTTTGAAACTCTTAAACCATCAACCCTGAGGGAACTAGAGAAATACGTTCAGCAGTGCTTGCGAAAAAAAGTAAAACCTCAAACAAAGAAGGCCAAAAATGCAGAAGAAAGGGAAATTGAACAGGCGAAAAAGAAAGAGGAACTTGAACGAAGGCTTCAGGATGTTAGTGGCAAGCTTGGAGGAACAGGGCAAAAGAAAGCAACAAAGAAAGAATCACAACGAGCAGATCACTCTGTAGTAGATGTTGTTGGCAGTGAGCCTAGGCCATCAAGATTAAGCGAAAGCAGCAGTACTAGTGGAAGTGGTTCAAGCAGTAGTTCTGATTCGAGTTCAAGCTCTGGCTCATCTAGTTCAGCAAGCAGCTCTGACTCTGAATCAGGTAGTGAAGAATAGACTGACTTGTGGCAACAGCGACAAAACAATGCCTCAAAAACTGGTGTCTTGAATTTCAAGACGTACAGGAAAAAAAAATTGTGTGTAGGCTCTGTCCATAGCTTTTGTTTTTAAATTGTAAATAATGTACAAATGAACAGATATGATTAGGTGCTTATGTTTCTTGTTTAAGTGTACTGTGAATGTGTATAGGTAGGATGTCCAGAAAAAGAGAATGCAAAAGATTGGTATTTGTTTCAACTCAACATATTAAAATTGTTGAAGTTGCATATTCCATGGTACAGGAGCTGTCAATATAGTATCAAGCATAGTGCAAAAGTTGTTTGTGTAATCTGCCAAATCCAGATAGAAGCTTAATAGTATAGGAAAATAAATATTGTATTTTTAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7JJ13	Bromodomain-containing protein 2 OS=Mus musculus OX=10090 GN=Brd2 PE=1 SV=1
Q6MGA9	Bromodomain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Brd2 PE=1 SV=1
Q5TJG6	Bromodomain-containing protein 2 OS=Canis lupus familiaris OX=9615 GN=BRD2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002591 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF17035 all species →	BET	Bromodomain extra-terminal - transcription regulation	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR050935 all species →	Family	Bromodomain-containing chromatin reader	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR043509 all species →	Domain	Brdt, bromodomain, repeat II	Interproscan
IPR027353 all species →	Domain	NET domain	Interproscan
IPR043508 all species →	Domain	Brdt, bromodomain, repeat I	Interproscan
IPR038336 all species →	Homologous_superfamily	NET domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22880 all species →	FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0070577 all species →	Molecular Function	lysine-acetylated histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0064.g62.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.