Gene detail

Detailed information of amic_s0064.g65.t1 in Acropora microphthalma

Genomic Location: sc0000064_pilon:1226822...1238205
NR annotation: XP_029185064.1, transcription initiation factor IIB-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0064.g65.t1

TAAAGATCTGCGGTGCAATTTAGTTGTACAATTGACATGGCGAGTAGCTCGCAGACAGTAAGATGTTCTCATCATCCCGAAGCACCGCTTATAGAAGACTATCGCGCCGGTGATATGATCTGTTCTGAGTGTGGACTTGTGGTTGGAGATAGGGTCGTAGATGTTGGTTCAGAATGGCGAACATTCAGTAACGAAAAATCAACCAGTGACCCCTCCCGTGTAGGGGCTGCACAGAATCCTTTATTAGATGGCGGAGACCTATCCACAGTCATTGAGAGGGGGCCAATAGGAGGCTCTGAGACAGATGGCTATTCCAAATATCACAATCGAGGCGGGTTAAGTGGTTCCGACAGAAGTCTGATGAATGCTTTTAGAGAAATTGGTGTAATGGCAGATAGAATAAATCTTCCCAGAAAAATACAGGACCGAGCCAATCAGCTCTTCAAACAAGTTCACGAACAGAAAAGTTTAAAAGGTAGAAGTAACGACGCCATTGCTTCTGCGTGTTTGTACATTGCTTGCAGACAGGAAGGTGTTCCCAGGACATTTAAAGAAATCTGCGCTATAAGCAAAATTTCCAAGAAGGAGATAGGACGCTGTTTCAAGTTGATACTCAAAGCCTTGGAAACAAGCGTGGATCTAATAACAACGGCTGACTTTATGTCCCGATTTTGTTCCAATCTCGGTCTACCTCCCAATGTACAGAAAGCCGCTACGCATATTGCCCGTAAAGCAGTCGATCTAGATTTAGTACCCGGTCGAAGCCCGATTTCAGTTGCAGCAGCCGCCATTTATATGGCTTCCCAGGCTTCAGAAGAAAAACGATCACAAAAAGAAATTGGTGACATTGCTGGAGTGGCCGATGTCACTATTCGTCAGTCCTACAGGCTCATTTATCTTAGAGCAGCAGAACTGTTTCCAAGCGACTTCAAATTTGCCACACCCGTTGATAAACTTCCGAATCTCTGATCCTCCAGTCCTTGCTTGAATATTTTCCAGACAGCAAAATGTTTCTCAACAAACAGAAACTTCACCCGCCGCTTTGTTGTTAAGTTAAATATCGGTGAACATTATCAAACTCATTGAAGGTGTAACTTTATCTTGCGGTTTACAGTTTTGCGAGGGTTTAAACAAAAGCTATCAGCTGATGCGAACTGTTTAAGAACACTTTTGCGATACAATCTTAAGATCACAACGGTTCTCTTATTTGGCTTTGCTTTTAGGGTTACGTAACCCTCAGCTACCAGTATCGACATGTTAAATTAAGttttaaaattcattaataatttataagagataagaccaatcagtgggcggtatttgggtcacatgtgcacctctgtgaaccccaatacaaatcaagtggggttgatgaattattaatcaatggatttctattttctaaagaaactttggtacttcgtcggtgagagagtgaaacaaaaatttggttttatcgaacgagttgataaaggtcgaattgccaccgtgaaagatttagaaagctgaagtttcgagcgttagcccttcgtcagagcgaagggttaacactcgaaacgtcagctttctaaatctttcacggtggtaattcaacttttatcaactcgtttgataaaaccaatttttggaattattaatacgttgtattaacttttgatacagaatcctacttagctaattagtattcattaacttttgctattgtttcatttcacaagtacgataaaatattcacgtccgatctgtatgggcgtttactcggctcgccattgttatcgcccatacagatcggacgtgtatatttcatcgcagtactacttTTAAATTTTTACTTTCATCCTACGTCAGTTAGTACGAGTCTCCGTATTGCACACGTGTTGCATTTTGTTTGGAGGTGGAAATTTGTTCGGGTGAACGAGGGTTAAACGCCCAAAGCAAAAATAAATACTGCTCCTTCTGACGTAATTCCGAATAACCAAAATATACTTCAAAGTAACTCTAAAATACCATTAGAAGTTTATTCATCAAAGGCGATGCTTTTCATTCTGCTTAAGTAATCATAATACGTTAGTCTGTGTATATAGAAAGCGTTTCTATCTCATGTGTATTGGTCTTACCAGAATCGTAGGATTAGATTTAGTGTCTGGGTTGTCTTGTGTCTTTCAGAAGTTTTCGAGATTACCCGTGCAATAAATGTAAGCCTACTACAGTGGCAGAACCTTTCTTAGAGTGCAAGAGGTCGCAAAATAAGAAAGCGAGAGAAATACACGGTTCGCGCGAAACTCGAAGGATGTGTGAAGCGATTTTCGAATTCCTGCGCTTCCCTCGTGTCGAGTGTCTCCTGAGTGTCGCAAATGCATTTTTCTCGCTCGTTACTATACGGAATTTCTTTCTTTTCTTTTGTTGAAAGAATTTCTAGTAGTGACTCCAAATTTACGGTTTCAGTTTTTTATATCGTTCTTTGCATTGTTTCCCGTTACTATTCAAATGTTTAAAAGTCGGACGTACTACTTAGTCAGCGCAATAGCATAATCTTTTAAACCATTTTTTCGAGATGACGCCAACGCCCATCCGTAATATATAACATAAAAATAGAAAAGAAATCAATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P62915	Transcription initiation factor IIB OS=Mus musculus OX=10090 GN=Gtf2b PE=1 SV=1
P62916	Transcription initiation factor IIB OS=Rattus norvegicus OX=10116 GN=Gtf2b PE=2 SV=1
P29054	Transcription initiation factor IIB OS=Xenopus laevis OX=8355 GN=gtf2b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006822 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08271 all species →	TF_Zn_Ribbon	TFIIB zinc-binding	Domain	Interproscan
PF00382 all species →	TFIIB	Transcription factor TFIIB repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023486 all species →	Conserved_site	Transcription factor TFIIB, conserved site	Interproscan
IPR000812 all species →	Family	Transcription factor TFIIB	Interproscan
IPR013137 all species →	Domain	Zinc finger, TFIIB-type	Interproscan
IPR036915 all species →	Homologous_superfamily	Cyclin-like superfamily	Interproscan
IPR013150 all species →	Domain	Transcription factor TFIIB, cyclin-like domain	Interproscan
IPR013763 all species →	Domain	Cyclin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11618 all species →	TRANSCRIPTION INITIATION FACTOR IIB-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0016251 all species →	Molecular Function	RNA polymerase II general transcription initiation factor activity	Interproscan
GO:0017025 all species →	Molecular Function	TBP-class protein binding	Interproscan
GO:0070897 all species →	Biological Process	transcription preinitiation complex assembly	Interproscan
GO:0097550 all species →	Cellular Component	transcription preinitiation complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03124	TFIIB, GTF2B, SUA7, tfb; transcription initiation factor TFIIB	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.