Gene detail

Detailed information of amic_s0065.g24.t2 in Acropora microphthalma

Genomic Location: sc0000065_pilon:319386...349426
NR annotation: XP_029213675.2, L-fucose kinase-like isoform X2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0065.g24.t2

ATGAGGCGAAAAGATGATAGAAGAAATTCGTGGGACGCCATTGTACTTACTTGTCAAAGGAAAACCAGTGCTCGAGCTATCCAGAAAGAACTTGAAGTACACCAGGGCAAGGGGTTTATTGGGAAAGATGTTGTGCTCATAACTTTGGAAGATCCTAAAGGTGGCGTTGGGAGCGGTGGTGCAACACTTAATGCCTTGCTTGTGGTTACAGAACATTTAAGTGCTAAAGCTGGTTTTCGGGTTGTCACAGAAAGTGTTTTGGAGAATGCAAGAATACTCATAATGCATTTGGGGTTTAGTTTCCCATTCAGCTCTTGTGGGAGATTCTTCAATCAACTTCCAGCAAAACACTCGGAAGAATCTAAAGAGAACCTCTGTGATTCCACTGTCCTGAATTTTGATTTAGTACTGTACATCCTTTCAAACACGTTGTCGCTGAATGCCCCCCCAGGTGTATGGATTTGCAATTCAGATATGATACCTTCAATTCCACTCAACCAAAGGATAAACTGGGAGCAATGTTCAGGAGGGACAATTTTGTTTCTCTCACAAGGAGATGTGCAGTATGCTAAGGACCATGGTGTTGCTAAACTTGGTGAAGATGGCAACATCAAAGACATCATTTTCCGAGAAAGTGAGGATAAAATAAAAAGCTTTGCTCTGGAGAATGGGAAGGTTCCTGTGGTGAGTGGTTGGGTGTACATGAGTAGTAGAGTGGCTTTTAAAGTGTTGAGTCTCCATGTCTATCATCCTTTAGATGCTTGTAGTTATTATGGACTGGATAATGGTGCAGAGGCCATCCAGTTATCCATGATCTTCGACATTCTCCTTTGTATGGCTGAGGATGTTATTGAATCAGCTTTTGTTGATGGAGACAGGAGTGGTACTTATTCAAAGCGACGCCAGGTGGAGACGAGTCGAACCGCACAACAGGAAGCGATGTTAATGAGGAGTGCAAGGGCACAGCTGTGGAACAATCTACGCGGACTGCAGTTGAAAGGAGTTTTAATTGAAAATGGATCATTTTATTACATGAAGGCATCCGCAGAGTGTTACAGGAGACAAATGTTGGAAAGCCCCCAAATTCTACAGTTTAGTGGTTTACCCTATAATTCCAGCAATGTTATGCATGTGACCTTTTGTAAGGATGGAAAATTGAGTGATGGTAATCACGTGCCGAAGTCGTGTATCGTCATCAATTCCAATTTGGATGATGTCATTAAGATTGGAGAGAATTCTGTCATCACCAACTGTGAATTAAAGGGTGATATAACTATTGGTCAAGGCTCTGTTTTCGTCGGCGTTTCCTCAGATATCATGAAGGATGTTCCAGCCGGTTTTGCTTTTCCAGATGAATTGTGTGTCATGCAGTTCAAAGTTTGTATTCCAAAACTCAGTGATAAAGCACAGCAAGTTTTGGTAGTGATGGGCGTCCATGATGATTTTCAGTTGCCGTTTTCGTCGCCCAAGAGCACATATTGCAACGAGCCCTGGGAAACATTTTTCAAGGAGGCTGGAAATAGCCCCGAAGAGATCTGGTTCGGTGTGCGTGAAGATGAGCGATGCCTGTGGAACGCAAGGCTGTTCCCTGTTGTTCATTTCTTCTCGGCCGCAAACGAGAACACTGGCAAAGACGATGTGTTGTGGTTAGCTATGGCCACTTGCGGTGCTTTGGGATCGTCCAACAAAAGGATAGACATCAACAGAAATTTCAGATGGCGGTCCTCCTTGAGGTTATCTTTAAAAGAAATTATGGCATTGGACGATTTGCCAGCAGAGTTCGAATGGACGAAGAAATTGTGGTTTCAAATTGGCAAGGCTCAAGTCGAGGACACGTTAAGGAACTGTAGAAGTGAATGCCTCCTCCCTTTCTTTAGGAGCTGTATCCATGAAGGATTTGAAAAAGATCTCTTGGAAACCTTAGATCATGTTGTATCAAGCACCAGTTCTCCAGGCGTGGCTGCGCGAACTCTTGCCTGTGTTGCTGACGTTTTGGGTGCGATGGCAGGAGAGAGAGCTGGACTGAGAAGTGGCCCGGCGCGCAATGAATCCTGGATGGAGGCATTAGAGTTTCTTGAGAAAGAGGATACCGAAGCTGGAGTGAAAAGACTTGCAAAGGAGAGGAATCTATGGTTTGATAGACCTGATCTTCTGATTCGAGCGGCTCGCCATTATGAAGGAGCGGAGCAGATTTTAAGAAGGCAGGCAGTTTTCACTGCTAAAAAGTTTTTTGACACTGAAGAATGCGAACCCCTTCCCATGGGTGATTGGGTCTACGCTGAAGCTCCTGCTCGTGCGGATTTGTCAGGATGTTGGACGGACACACCTCCTATCACATACGAACATGGTGGGGCCGTGCTGACAGCAGCCATAAACCTCAATGGCAAGAAAGTAATGGGAGCCAAAGTGAGAAAAATACCCGAGTTCGAGATTGTTCTTGTGATCCATGCCGGAGAACACAGTGTTAAGGTTGTCTGTAGTGAGTTGAGTGATTTGAAAAACTATACTCAACCACACGCCCCAGGTGCTCTTCTTAAAGCGTGCTTTTGCCTCTTGGACATTGTAACACTTCCATCAAACGAATCTTTGCCTGAGCAATTAAGAAAAAGGTTCAAAGCGGGCTTCGAACTCCACACCTGGTCAATTGCGCCTCAAGGAAGTGGTCTTGGAACCAGTAGCATTTTGGCAGGAGTTATCCTTGCAGCGTTGCTAAGGGCAACAGGACGAAAAGCAAGTCTGGATTCTCTCGTGCACGCGGTTTTGTTGATCGAACAGATGTTGACGACCGGTGGCGGTTGGCAAGACAATGCGGGTGGACTGTTTCCTGGTTTTAAGATGACTCGATCCAAGGACTCCTTGCCTTTAAAGGTTGAAGTTGAACAACTGAACTTGTCTCAAGAAACTGTGGACAAGTTTACCGAGAGACTGATATGCCTCTACTCAGGGAAACCACGCCTTGCTAAGAACCTTTTGCAGGACGTTGTCAGGAACTGGTACGCGAGGTTTCCGCAAATAACTCGAAACGCTGATGAGCTGATAAGCAATGCAGAAGAAGCGGCGACAGCTCTGAAAGAAGGGGACATCGAGAAGCTCGGCGCATGCATAAGCTGCTATCGCAAACAGAAATGCATTATGGCACCTGGAACTGAACCAGATTCAATTCACGAAGTGATGGAGGCAATAGATCCATTGGTTTTGGGACAAACTTTGACCGGAGCGGGTGGGGGAGGGTTTTTGGTGCTTATCACGAAAGAACCAAACATGGCGGACAAAGTTAAAGCTGTTATTCAGGAAAAGAAGGCTTCTGATGACTTTACTTTTTATGATGTGAGCGTAGACTGGGAAGGATTGACTGTCAGAGTGGAGTCATCTCATCAGGGAACCTCATGA

Transcript

amic_s0065.g24.t2

GAATATGCATGTGCAGTGACTGGCTTTCATCTTACAAATTCTTGGAATTAAACGACGATAGCACGGAGATAAAATCGGCGAACACGACGTAACTGCTAACGAGGAAACAGGACTTTGTCGGGTCGGTCTGCTGCAAAATGAGGCGAAAAGATGATAGAAGAAATTCGTGGGACGCCATTGTACTTACTTGTCAAAGGAAAACCAGTGCTCGAGCTATCCAGAAAGAACTTGAAGTACACCAGGGCAAGGGGTTTATTGGGAAAGATGTTGTGCTCATAACTTTGGAAGATCCTAAAGGTGGCGTTGGGAGCGGTGGTGCAACACTTAATGCCTTGCTTGTGGTTACAGAACATTTAAGTGCTAAAGCTGGTTTTCGGGTTGTCACAGAAAGTGTTTTGGAGAATGCAAGAATACTCATAATGCATTTGGGGTTTAGTTTCCCATTCAGCTCTTGTGGGAGATTCTTCAATCAACTTCCAGCAAAACACTCGGAAGAATCTAAAGAGAACCTCTGTGATTCCACTGTCCTGAATTTTGATTTAGTACTGTACATCCTTTCAAACACGTTGTCGCTGAATGCCCCCCCAGGTGTATGGATTTGCAATTCAGATATGATACCTTCAATTCCACTCAACCAAAGGATAAACTGGGAGCAATGTTCAGGAGGGACAATTTTGTTTCTCTCACAAGGAGATGTGCAGTATGCTAAGGACCATGGTGTTGCTAAACTTGGTGAAGATGGCAACATCAAAGACATCATTTTCCGAGAAAGTGAGGATAAAATAAAAAGCTTTGCTCTGGAGAATGGGAAGGTTCCTGTGGTGAGTGGTTGGGTGTACATGAGTAGTAGAGTGGCTTTTAAAGTGTTGAGTCTCCATGTCTATCATCCTTTAGATGCTTGTAGTTATTATGGACTGGATAATGGTGCAGAGGCCATCCAGTTATCCATGATCTTCGACATTCTCCTTTGTATGGCTGAGGATGTTATTGAATCAGCTTTTGTTGATGGAGACAGGAGTGGTACTTATTCAAAGCGACGCCAGGTGGAGACGAGTCGAACCGCACAACAGGAAGCGATGTTAATGAGGAGTGCAAGGGCACAGCTGTGGAACAATCTACGCGGACTGCAGTTGAAAGGAGTTTTAATTGAAAATGGATCATTTTATTACATGAAGGCATCCGCAGAGTGTTACAGGAGACAAATGTTGGAAAGCCCCCAAATTCTACAGTTTAGTGGTTTACCCTATAATTCCAGCAATGTTATGCATGTGACCTTTTGTAAGGATGGAAAATTGAGTGATGGTAATCACGTGCCGAAGTCGTGTATCGTCATCAATTCCAATTTGGATGATGTCATTAAGATTGGAGAGAATTCTGTCATCACCAACTGTGAATTAAAGGGTGATATAACTATTGGTCAAGGCTCTGTTTTCGTCGGCGTTTCCTCAGATATCATGAAGGATGTTCCAGCCGGTTTTGCTTTTCCAGATGAATTGTGTGTCATGCAGTTCAAAGTTTGTATTCCAAAACTCAGTGATAAAGCACAGCAAGTTTTGGTAGTGATGGGCGTCCATGATGATTTTCAGTTGCCGTTTTCGTCGCCCAAGAGCACATATTGCAACGAGCCCTGGGAAACATTTTTCAAGGAGGCTGGAAATAGCCCCGAAGAGATCTGGTTCGGTGTGCGTGAAGATGAGCGATGCCTGTGGAACGCAAGGCTGTTCCCTGTTGTTCATTTCTTCTCGGCCGCAAACGAGAACACTGGCAAAGACGATGTGTTGTGGTTAGCTATGGCCACTTGCGGTGCTTTGGGATCGTCCAACAAAAGGATAGACATCAACAGAAATTTCAGATGGCGGTCCTCCTTGAGGTTATCTTTAAAAGAAATTATGGCATTGGACGATTTGCCAGCAGAGTTCGAATGGACGAAGAAATTGTGGTTTCAAATTGGCAAGGCTCAAGTCGAGGACACGTTAAGGAACTGTAGAAGTGAATGCCTCCTCCCTTTCTTTAGGAGCTGTATCCATGAAGGATTTGAAAAAGATCTCTTGGAAACCTTAGATCATGTTGTATCAAGCACCAGTTCTCCAGGCGTGGCTGCGCGAACTCTTGCCTGTGTTGCTGACGTTTTGGGTGCGATGGCAGGAGAGAGAGCTGGACTGAGAAGTGGCCCGGCGCGCAATGAATCCTGGATGGAGGCATTAGAGTTTCTTGAGAAAGAGGATACCGAAGCTGGAGTGAAAAGACTTGCAAAGGAGAGGAATCTATGGTTTGATAGACCTGATCTTCTGATTCGAGCGGCTCGCCATTATGAAGGAGCGGAGCAGATTTTAAGAAGGCAGGCAGTTTTCACTGCTAAAAAGTTTTTTGACACTGAAGAATGCGAACCCCTTCCCATGGGTGATTGGGTCTACGCTGAAGCTCCTGCTCGTGCGGATTTGTCAGGATGTTGGACGGACACACCTCCTATCACATACGAACATGGTGGGGCCGTGCTGACAGCAGCCATAAACCTCAATGGCAAGAAAGTAATGGGAGCCAAAGTGAGAAAAATACCCGAGTTCGAGATTGTTCTTGTGATCCATGCCGGAGAACACAGTGTTAAGGTTGTCTGTAGTGAGTTGAGTGATTTGAAAAACTATACTCAACCACACGCCCCAGGTGCTCTTCTTAAAGCGTGCTTTTGCCTCTTGGACATTGTAACACTTCCATCAAACGAATCTTTGCCTGAGCAATTAAGAAAAAGGTTCAAAGCGGGCTTCGAACTCCACACCTGGTCAATTGCGCCTCAAGGAAGTGGTCTTGGAACCAGTAGCATTTTGGCAGGAGTTATCCTTGCAGCGTTGCTAAGGGCAACAGGACGAAAAGCAAGTCTGGATTCTCTCGTGCACGCGGTTTTGTTGATCGAACAGATGTTGACGACCGGTGGCGGTTGGCAAGACAATGCGGGTGGACTGTTTCCTGGTTTTAAGATGACTCGATCCAAGGACTCCTTGCCTTTAAAGGTTGAAGTTGAACAACTGAACTTGTCTCAAGAAACTGTGGACAAGTTTACCGAGAGACTGATATGCCTCTACTCAGGGAAACCACGCCTTGCTAAGAACCTTTTGCAGGACGTTGTCAGGAACTGGTACGCGAGGTTTCCGCAAATAACTCGAAACGCTGATGAGCTGATAAGCAATGCAGAAGAAGCGGCGACAGCTCTGAAAGAAGGGGACATCGAGAAGCTCGGCGCATGCATAAGCTGCTATCGCAAACAGAAATGCATTATGGCACCTGGAACTGAACCAGATTCAATTCACGAAGTGATGGAGGCAATAGATCCATTGGTTTTGGGACAAACTTTGACCGGAGCGGGTGGGGGAGGGTTTTTGGTGCTTATCACGAAAGAACCAAACATGGCGGACAAAGTTAAAGCTGTTATTCAGGAAAAGAAGGCTTCTGATGACTTTACTTTTTATGATGTGAGCGTAGACTGGGAAGGATTGACTGTCAGAGTGGAGTCATCTCATCAGGGAACCTCATGAAAATGTCAACCAAAAAAAATAGAGAAAATCTTTTCATCATGCTTGTTAGGGAATGGAAGTCCTGATGTTTTATCTGGGGTTGTCCTGTCGTTCGTTCACGACAAATTGTCTGCGTGTTTGCTGTGTTGATTCTGATCGTATTGTTAGTGGAGCAATTTCAAAAAGGAAATAGTTTTTTTCTAGGCCATTTTCACCATTAGTGTTTCCTTATGTTGTAAAATAGAGTGGGCTTGCCTGGATTATTTACAAGGGCGTCACAGGGAATAAGGTCACGAAAAGAAATGTATAATTTGAAGCTGTTTCTCAGGCGCTGGAACTCTGACTCATTATCAGAATGGCTTCACCAAGGTTAGCTAGAAGCATAGGTGGCAATCGCCTAAGCTGTTCTGAGGTAAAAGACAATTTTTTAACGGACTGAGAAAACTTAAGAATCTTTGAAAAACTGGGCTTTGTTTTTACTCTCCTTTTAATTGAACGTTAGGAATACATTTTAAGGCTGCCTGTTGAAGTAAGGATTTAGTTATGATATTTTATAGACTATTTTAATGTAGTGCTTATGGTAGGTGGATTTTGCATTCATTGATTGGAATAAAAATCAACAAAAAGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TMC8	L-fucose kinase OS=Mus musculus OX=10090 GN=Fcsk PE=1 SV=1
Q8N0W3	L-fucose kinase OS=Homo sapiens OX=9606 GN=FCSK PE=1 SV=2
Q9LNJ9	Bifunctional fucokinase/GDP-fucose pyrophosphorylase OS=Arabidopsis thaliana OX=3702 GN=FKGP PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001981 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07959 all species →	Fucokinase	L-fucokinase	Repeat	Interproscan
PF08544 all species →	GHMP_kinases_C	GHMP kinases C terminal	Family	Interproscan
PF00288 all species →	GHMP_kinases_N	GHMP kinases N terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012887 all species →	Domain	L-fucokinase	Interproscan
IPR013750 all species →	Domain	GHMP kinase, C-terminal domain	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR006204 all species →	Domain	GHMP kinase N-terminal domain	Interproscan
IPR052203 all species →	Family	GHMP Kinase-Related Enzymes	Interproscan
IPR036554 all species →	Homologous_superfamily	GHMP kinase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32463 all species →	L-FUCOSE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0042352 all species →	Biological Process	GDP-L-fucose salvage	Interproscan
GO:0050201 all species →	Molecular Function	fucokinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05305	FUK; fucokinase	EC:2.7.1.52	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.