Gene detail

Detailed information of amic_s0065.g26.t1 in Acropora microphthalma

Genomic Location: sc0000065_pilon:386325...389195
NR annotation: XP_044170006.1, tripartite motif-containing protein 2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0065.g26.t1

CCGTACTCTTCTGTCATAGTACAGCTTACAGATCACTCTTGTGAAAAATCTAACGTCATTCCAGCATGGCCACTGCCTCGCGTTCTTCAGCCGCAATCATTACCGAAAGTCTTGTTCGGGTTTTCAACGAAGAGCTTTCGTGTCCGATCTGCCTGGAAGAACTGAAAGAGCCAAAATGTCTTCCCGAATGTGCTCACAACGTTTGCAGAGCATGTCTAGAAAATATGGCTCGCCCAAGCCCTGAAATCATCCGTTGTCCAATTTGCAGGCGAGTCACACAGATGCCGCGGGGTGGTGTAAGGGCTCTTCCAACGAATACTGTTTTGATAAGGTTGCTAGAGGCAACTCCAGGCCGACAAGAACGTTTAGATGTGCAGAAATCACTTGATAAGAGTAAACCAGTCGTAGAAGAAATGGAAAAGAGGCTTAACATCTTAGATCACGCTTTGGAGAAATTAGAAACTAACTGGCGGAAATCCAAAGAAGGCATCTACTTTACAGCCAACATGATGATAGAAGAGATAAGAAACCAGGAGAGCAAATTGTGCTCGGATGTTGAAGAGTTTTTTGGCAAGAAACAGAGAGTGCTACAGCATCAGAGACAAAACTTGTCAACTTTGATTTCGAATGCTTCATCTTGTGTTCAAACTGCTGCAGAGGTTCTCGAAAAGGGGGAAGTGCAAGAATTAACAGATATGGCTAAAGTTCTCACGGACCAACTGCAAGAAATAACATTTATGAATATCGAAGACACAGAAGAAATGACATCTAGGTGCCAAGAACTTGTGGATTTCTTTCCCAATCACGATTTACAAATTACTCTTGAAAGAGAATGTATCGGTGAACTCAAAACACAGATCACAGAGAAAGCGGCATCGAGTGATGGATATTCTACAGACACTGCCAACTTCCAGCTCATGGGACAGGTAATCAAGAAAATTGGACACAAGGGAACAAGAAATGGTAATTTCAGGAACCCTGGAGGTGTTGCTTCAAACGAAAATGGAGAAATTGCAGTAACTGACTACTTTAACAACAGAGTGGAAGTCTTTAATGAAAGGGGAAAGTTTTTGTTCAAATTTGGCAAAAAGGGGAATGCTGAAGGGCAATTCATTGGTCCTACTGGAATAGCTTATACTAGAAATAACAAACTTGTTGTCATGGATAGCAGAAACTACCGGGTACAAATCTTTGACAGTGCTGGTCAGTATCTCTTAAGCTTTGGGAAGAGAGGATCAAATGAAGGTGAATTCGGCCTTGCAGAAGGGATTTTTGTTGATGATGACAATAATATACTTGTGACTGACACTGAAAACAATCGTGTCCAGATCTTCTTAATGGATGGTACATTTGTGCGTCAGTTTGGAGGGCGGGGTCCTGAAGGATTTGACAAGCCATTAGGAACTGTCTACCATAAAGATGAATTCTACACCTCTGACAAGGGTAATAACTGCATAAAAGTGTTTGATCACTTTGGAGCTTACGTTCGGCAGTTTGGTCGTGTGGGATTTGGGACTGGCGAATTTCGATGCCCCAGAGGAATCACAGTTGACTCTGCAAATGATTTCATTTTGGTTTGTGACACTGAGAACCATTGTATACATGTTTATAAGTTGGATGGTACACATGTCACAAAATTTAGTACAAAAAAGACTCCAGTTGGAATAGATCTTTTGAAAGGCAGACAGGTAATTGTATCATCATATTATGGTCACTGCGTTCAGATCCTGACATATTTATAGTCGATATACCTTTAAAACCTTATGTCAGACCTTTAAGTCCAAGACTGCAAGTAACTTCAGCAAGAGATTAAAGAGCCAGTGAAATAATCACAGGCACAAAAATACTGGCGGCACACTGTACGATGGGAACAGCAAAATATCCTCTGCATTCCTTGCATAAGCACATATTGTCCTCACTCTTTAATCACTTGCCCAAATTAGAGATTGCTAACAGTCTACTCAAAATCAAACTACAAACAACTTCTTCGGACATAAATCTGTGGAGTAAAAAAATGCAAATGCATGTTTTCATAACAATAATTTGAAACACCTTGTCTGATCTTTTACAAAACAGTTGATTATCAAATACAATGAGTAACTTTCTTTTCCGTTGATTTCATTATACAGTAATAAACAGTAACGGGTGATTTCTTATAAATTTTTCCATACTTTCACTTACAACAATAGCAATAAAGTGTAACTTTTGTATGGTAGTGGAAAACTGAGAAGGGATCTAGTCAAAAGATGGTGAAGAGGTATGATCGAATAACTCATGTTTTGGTTAGTGTTTGTCTTGTCACAAAATCTTTTCTAAATATTATAAAGGGAGGAAGATTATGAGAGAAGACCACAGGATCACTAGAAATACCTGCCCCAGTAGCTGAGGAAAAAAAATTTGGAGTCAGCATAAGCAGCCCCAGAAAAAGGGTGTAGACCCATGAACTTGTCCTCTTCTTTCACTGACATCTTTATGTCTTGAATTACTAAATTATTTACTTTGTCCCCAAATGTGTGTTCTATCAGCCAAGTCCTTTGTTGCTAGCCAGAGTAATATCTATAAGTGTTTACAATGTTATATTCTTTACCTTCACATGGCAAGAAGTCTTGTAAAAACACCAGAATTATAAATTAATATCATTCTTTCCCTACTTAAAGTTTGAGTGGCATACATTTTTCATCCTGAATAATATGGACAAAACAATGGAATATGGAATGACTGAAAAACTCCAAGGTTTCTTTCCTCCTTCATTTAAAACATTACATTGCTTTTAATATTCATGGAACAAATACTTTGACCTTAGTTTAAACTAAGTCAAATTGTTTTAATTTAATGAAAACAATAATATTTGAATGAAAACTTGAAATGTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5D8S5	E3 ubiquitin-protein ligase SH3RF1 OS=Danio rerio OX=7955 GN=sh3rf1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010586 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF17170 all species →	DUF5128	6-bladed beta-propeller	Repeat	Interproscan
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR050952 all species →	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104 all species →	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11997	TRIM2_3; tripartite motif-containing protein 2/3	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.