Detailed information of amic_s0065.g42.t1 in Acropora microphthalma

Genomic Location: sc0000065_pilon:616478...630932
NR annotation: XP_015769665.1, PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A5YKK6CCR4-NOT transcription complex subunit 1 OS=Homo sapiens OX=9606 GN=CNOT1 PE=1 SV=2
Q6ZQ08CCR4-NOT transcription complex subunit 1 OS=Mus musculus OX=10090 GN=Cnot1 PE=1 SV=2
A0JP85CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=cnot1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002577 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04054
all species →		Not1CCR4-Not complex component, Not1RepeatInterproscan
PF12842
all species →		DUF3819CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007196
all species →		DomainCCR4-Not complex component, Not1, C-terminalInterproscan
IPR040398
all species →		FamilyCCR4-NOT transcription complex subunit 1Interproscan
IPR024557
all species →		DomainCCR4-NOT transcription complex subunit 1, domain 4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13162
all species →		CCR4-NOT TRANSCRIPTION COMPLEXInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000288
all species →		Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0000932
all species →		Cellular ComponentP-bodyInterproscan
GO:0017148
all species →		Biological Processnegative regulation of translationInterproscan
GO:0030015
all species →		Cellular ComponentCCR4-NOT core complexInterproscan
GO:0060090
all species →		Molecular Functionmolecular adaptor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12604CNOT1, NOT1; CCR4-NOT transcription complex subunit 1-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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