Detailed information of amic_s0065.g43.t1 in Acropora microphthalma

Genomic Location: sc0000065_pilon:632174...657062
NR annotation: XP_044167139.1, LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A5YKK6CCR4-NOT transcription complex subunit 1 OS=Homo sapiens OX=9606 GN=CNOT1 PE=1 SV=2
Q6ZQ08CCR4-NOT transcription complex subunit 1 OS=Mus musculus OX=10090 GN=Cnot1 PE=1 SV=2
A0JP85CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=cnot1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002577 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16418
all species →		CNOT1_HEATCCR4-NOT transcription complex subunit 1 HEAT repeatDomainInterproscan
PF16417
all species →		CNOT1_TTP_bindCCR4-NOT transcription complex subunit 1 TTP binding domainRepeatInterproscan
PF16415
all species →		CNOT1_CAF1_bindCCR4-NOT transcription complex subunit 1 CAF1-binding domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR032194
all species →		DomainCCR4-NOT transcription complex subunit 1, HEAT repeatInterproscan
IPR038535
all species →		Homologous_superfamilyCCR4-NOT subunit 1, TTP binding domain superfamilyInterproscan
IPR032193
all species →		DomainCCR4-NOT transcription complex subunit 1, TTP binding domainInterproscan
IPR032191
all species →		DomainCCR4-NOT transcription complex subunit 1, CAF1-binding domainInterproscan
IPR040398
all species →		FamilyCCR4-NOT transcription complex subunit 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13162
all species →		CCR4-NOT TRANSCRIPTION COMPLEXInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000288
all species →		Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0000932
all species →		Cellular ComponentP-bodyInterproscan
GO:0017148
all species →		Biological Processnegative regulation of translationInterproscan
GO:0030015
all species →		Cellular ComponentCCR4-NOT core complexInterproscan
GO:0060090
all species →		Molecular Functionmolecular adaptor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0065.g43.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP