Gene detail

Detailed information of amic_s0065.g47.t2 in Acropora microphthalma

Genomic Location: sc0000065_pilon:679226...690702
NR annotation: XP_029186600.2, doublecortin domain-containing protein 2C-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0065.g47.t2

CGCGTAAAAAATGTTTAAAATTCGTGGCAAAAAAAATTGCCAGGTCTTTGAGGGGAAGTCATAATAAATGTTCTGTGTGAGACAGCATAGACTCAGAGATGAAAACAACAGTTCTTCTCAGTTAAGATTTTAGCTTTGCGTCATCACACTCGTCCTCGTATTGTTTATCAAAGTTCAGGTTGATTTGAAGAAAGTCAAAAGCATGGAACCTTTGCAAGAACAGAGAGGGACATTAGTTACATCTAAACCCAGATTATTCTCGTTGCAAGATGTTTCTCAACATTGTGATGGAAATTCATGCTGGATTGTGATCGAAGATGCAGTATACGACGTAACCAACTTTTTGGCGGAGCACCCAGGTGGTAGTGAGATAATGCTCGAGCATGCTGGTATGGATGCCACTTCTGTGTTCCAAGATATCAATCACTCAACTGAAGCAAAGAAAATGCTCGTTGGATACTACATTGGTGAGCTGATAGAGAGGGACAGGATTCACAAGAAAAAGCCCAGTCGATTTAAAGGACAAGAAAGGCAAGGAGGCATTATGACTGCGATGGTGTCGTCTGTACCCCCAACAGCATTGACTGTAAGAGTTTACAAGAATGGTAACAGCACATTTCTGGGTAAAACTCTCGTTATCAACAAACGTTGTACAAGGACGATGGAAGCATTATATGATCAGATAACCGCTCACATTTCGGCGTATAATGCCGTAAGAAGAATTTGTACACCGATTGGGGGTCGGCCGGTGGCGAATCTTGAGAGTATAAAAGACAAAAGCGCGTATGTTGCTGCAGGGAGAGAAGAGTTTAAAAAACTGAATTACGCTGATATAGGAGCATCAAAACAGCGTCGAGCTCGTAAAACTAATAATGCGCCTAGAAAAACCATCATTGTTGGAGAAGGAAGACATAAAATGGATTATGAGTGGGGAAAACGGGATTTGAAAATCCTTTATGTATTTTGCAACGGAGACGTATTCAAGCCCAAAGTAAAAATAGTTCTTCAGAGGAAATTTCAACAGAGTATGGAACAGATTTTGAGTATTGTGCAAGAACACGTTGTAATGGCGGCTGCAATTGCTGCCCTTTATACCAAAGATGGTAAACTGGTTTTAAGTCCGAGTGAGTTGGTCTCAGGAATAGATTATGTAGCAGTTGAAAGGGGACGAGCCTTTAAACGGATGAACTACGGTGGAGCCTCCTCTCCTCTGTCAAAAAGCTCTAGAGCGCGATTTTTGCCTCACATAGGCAATGGCCAACTAATCAACGCAGTACAGCCTCAGAGGAGAAAGGCGGTGAAACAAAAGCCCAGAATATTAAAAACCAACACCAAGGAAAAGACAGATGAATTGTCTTCTGACGCCATGCAGCCATTTTCACCAGACTTACCACCTGCTCTCGGTCTGAGTCAGCTGCGCGAATCGCAAGATGTCGAGAGCATGAACAATTTTACGATATCCAGTTCGCCCCCTGGATGGTTTGGCGAGGACACCCCTCTTCCTGGGGACACTGGAAACAATGAGGAAAAGACATCAACTATTGGAAATGTGTTCACCGCAAGCGGGTTGATGAAGGAAAAAGCAGATGAAGTCAGGGAAACTCGCCAAACAAAAGAGGAGAAACCGATTGACCTTATCAAGGCAGAAGAGGTTCTTGAGGAAGAGCTTCATGGTGTTGAGAAAGAACTGACGAACAAGGGAGACCAACAATCAAAAGAACAAACGAGGGAAATGGAAAAAGAGGGATTTAATGACAAATCCGTCTCAGTACCACCAGGTGAAGGTTCCACCAGAAATGAGACTTCTCCTCGTTCATCTAAGGAAGGACGGCGAAAAACTTCAGTTTCTAAACAGGACACAACCACCGACGGAGAAAACATCCAAAACAATAGTAATGTTGTGAATTAGTTGATTGCTAACAGAACAAAACCAAGCTCGCATGCGTACATTTTTCTTTCCTCCCTTTTTTCTGTCAAAAACTCTCTCTTCTCCTTTTCACACCGTCCCCCTACGCAAAACCCGTCTGTCAAGAACTAACTATCGTTACATAAATGTAGTCACGTAATTTCCGTCAGCAAAACTCTAAGTTTATGAGGGTTTCTCTAGTGACTTAGGTTACTCTCTGAAAAAGAGTTAAGAATGTTAACTTAATTAAAGATCCCTCAGCAGTGGAGCCAAGAATGACGATGGGGAATGAAACTCTCGCATTTCTTCAAGAAACGGCATATTAGATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P40312	Cytochrome b5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CYB5 PE=1 SV=2
O43169	Cytochrome b5 type B OS=Homo sapiens OX=9606 GN=CYB5B PE=1 SV=3
Q5RDJ5	Cytochrome b5 type B OS=Pongo abelii OX=9601 GN=CYB5B PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002121 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00173 all species →	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	Domain	Interproscan
PF03607 all species →	DCX	Doublecortin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036400 all species →	Homologous_superfamily	Cytochrome b5-like heme/steroid binding domain superfamily	Interproscan
IPR001199 all species →	Domain	Cytochrome b5-like heme/steroid binding domain	Interproscan
IPR003533 all species →	Domain	Doublecortin domain	Interproscan
IPR036572 all species →	Homologous_superfamily	Doublecortin domain superfamily	Interproscan
IPR018506 all species →	Binding_site	Cytochrome b5, heme-binding site	Interproscan
IPR049626 all species →	Family	DCX/DCDC2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23004 all species →	DOUBLECORTIN DOMAIN CONTAINING 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0065.g47.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.