Gene detail

Detailed information of amic_s0066.g20.t1 in Acropora microphthalma

Genomic Location: sc0000066_pilon:259936...266816
NR annotation: XP_029214166.2, synaptic vesicle membrane protein VAT-1 homolog [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0066.g20.t1

CTATAAAGCACTTGTTTAATGACAGTTTATTGTTTATAGAGGTTTTGTATTAGCGATAGTGTTCCCCAACGTCTTTCATGTTTCGAAAGGAAACCTCTCGAGAAGAGAGCGTGACTAACGGCTTCTAAACGAGCTCGAGGGTAAATGCCTGGTTGAATTTCGGTTATGCAAGAGTATTTCCTCGTCGGCGAAGAGAAAGATGATCCGAATTCCTTCAGCTGGTGGATACGATAAGCTGGTTTATGTGCCTCTGAAGGATGGAGAATATACGCAGGGAGCGAACATAAACCTCAATCAAGGTATTAAAGAAGAGGATCTTGTGGTCGTCAAGACATATGCATGCGGTGTCAACTACGCCGATGTGTGCATTCGCTGGGGTCTGTATGAGTCTGCCAAGAAATTCGTGGGCTGGCCGATTACTCCAGGGTTTGAATTCAGTGGAGAGATAGAGAGCAAGGGGGAAAATGTTAAAGAATTCGAAATCGGGCAAAAGGTTTTCGGATTGTCTCTCTTTGGTGCTTATTCGACGCGGATTCGGGTGCCGAAACAACAGATATTCAAGCTGCCAGAAAAACTTGATAAGTACGAAGCAGCGGGATTTCTGACAGTGGCTCTTACTGCCTGGTATGGAATGTTTGAACTTGCTAGACCAAGAGCTGGTGGCAAGATTTTAGTACATTCTGCCGCCGGTGGAGTGGGAAGTATGCTGGTGCAGCTCGCCAAGATAGCCGGATGCCATGTTGTGGGTGTTGTAGGTGCAAGTCATAAAGTAGACATTGTCAAGCAATTAGGTTGCGATAATGTTATTGACAAATCTAAGGAGAATCTCTGGCAAGCTGCCAAATCCATTTCTGGTGGAGGGTATGAAGTTGTGTTCGATGCTAATGGCGTGGAAACTTTGCAGGACAGCTACAATAACTTGGCACCGGGAGGAAGGCTTGTAGTTTACGGTTTCCACTCAATGCTTCCCAAGTCAAGTAAGAGTACTTCTGGTGCAATTAGCTTCTGGCAGTGGATGAAACTGGGCTGGAACTACAATTGCACACCTATGTTCAGTCCGCTCAGGATGACAACTGAAAATAAAAGTGTAATGGCATTCAATCTTAGCTTCCTGTTTGATCGCCATGATCTTTTGAAAGAGAGCATGGCACAACTTCTTCACTGGGAGAAACAAGGCACACTGAAAGTTGGCAAAGTCACAAAGTACCCGCTGAAGAATGTAGGCACAGCACACAGGGAGTTAGAATCAGGGCAAACAATCGGCAAACTTGTGCTCACTATGGAAGAAAATGAACTGAGTCTCGAACAATGAAGCATGGCATACCTCTGACAGTGTTAGCTGCAGTTCTAGCattagggatttatacaagctacaacggctgctgcgacgaaaatgtcacttaaaaatagaccattgcgatcaaattgtacgatttttgcgcgtattccatgttggtcatatcgtccctaatgggcgaagtgtccttttgtttgcttggcaggaatggttttcatgtaatggcagagaatcaaagatttactgctgtgagcttgcgttgtcgtcagaagctcaaatgtgaaaattgcacgtcgtcgtttggcagactacagcaaaaaatatgccgcacatgcattatgcatattcttaaccattcgacgaatcaaattgtttatttgtggcattaccgttgccgttgcagttgttgtttcttcaaatccctattGCTTGCCTTTATGCGGCATTCATGAGCAAATTAAGTGATCGTTTGAATTTAACAGGTTATTGTTTCATTTTTTTTGCGGCAGTGGGTATGATGGGTTATGATTAGACAAACCTTGGGATATTTTTTTTGTTAAGATCATTTAGAAATAGAGTAGCTCTCAAATGAGTGGTCGAGGGAAACGTGCCTAGCTAGTGGGAAAGTAAAGAAATCATGCAACATCCATTTAAATACACTGGTTATTGTTTTTGACTTAAAAAGATTTCACCAAGCTTATCATTCTGCTATTCCTGTAGATTCTTTGGGAAAAAGGTGACATGAACATTGCAGTTATGGGTGCTGCTTCGCCACCATGCAATagctgttattacagttgatcccgcagacaaaatttcttttgttcaccactgcatgcaaacgaggctaaggggtcaatacaatgggaaatggatcattagcctcgtttgtgtgtcaagaccgctggtaactgtaataacagctattCTTTTTTTTTCATTGAATCAaatagacctctttagcttgtacattttgttttcccatttcagaccacgtgatgccctcgtggaaattttccttttgttttgtcattagttatgcgtacatttgcacgtgcataagacgacatttgaaagccggaaactattccctcgagtagcatcacgtggtctgaaatgggaaaacaaaacatgtacaagctaaagaggtctattGCCTTCCTTAACAGTCCTTGTCCTTTTAACAGTTAAGCTCTTTCATGTATGTTATACCGAAAACTACCAGTGTTGTTGTTTTTTTTAATTCTTTTTTCATTAAATGTCTAATATTGCTTTTGCTTTGTCTTGCATTGTCCAACCTAGATAAGCTTAAATAGCTGTTTGCAAGGCATCTAATATTGTAAATTTTATCATTTGGTAGTAGTAAATtattctcttgtattgtgttgtattgtTACTTTAGTATTAATGAAAAGAAAGCCTGAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8JFV8	Synaptic vesicle membrane protein VAT-1 homolog OS=Danio rerio OX=7955 GN=vat1 PE=2 SV=1
Q3MIE4	Synaptic vesicle membrane protein VAT-1 homolog OS=Rattus norvegicus OX=10116 GN=Vat1 PE=1 SV=1
Q99536	Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens OX=9606 GN=VAT1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006334 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00107 all species →	ADH_zinc_N	Zinc-binding dehydrogenase	Domain	Interproscan
PF08240 all species →	ADH_N	Alcohol dehydrogenase GroES-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013149 all species →	Domain	Alcohol dehydrogenase-like, C-terminal	Interproscan
IPR020843 all species →	Domain	Polyketide synthase, enoylreductase domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR051397 all species →	Family	Zinc-containing alcohol dehydrogenase-like protein	Interproscan
IPR011032 all species →	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR013154 all species →	Domain	Alcohol dehydrogenase-like, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43677 all species →	SHORT-CHAIN DEHYDROGENASE/REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0066.g20.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.