Gene detail

Detailed information of amic_s0066.g78.t1 in Acropora microphthalma

Genomic Location: sc0000066_pilon:1277567...1290505
NR annotation: XP_029207792.2, uncharacterized protein LOC114971423 isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0066.g78.t1

CTGCACGCTTGTTCTTCAAGCTTTGTACGTGGGAAGATATCGTGCAAAAAGACACGAGAGGACTTGGGTTTGTCGAGAGAAATACCGCTAGTCTCTCACAAAGAATCATTTTTCGATCTTTTGGCACCAAAACAAAGATCAATTTATCAGTAATTCACGGCTTCCGGCGGAAAGATGATTCAGCAGTATTAAGGCTGAATTTTGTTACCGAAGGAAGTGAAGTTGATCTTTCATGGTCGCTTGCCATTTGTAAACAGGAAAGAAGAGATTCACCAAGCGACTGAGTGACTTTCGTGAAGACATTCAAAGGTGTTTTATTCATTGGAATATTCAAAATTGGTAGTGCAATGGAAACTAATCGAGGCTCCCATGGGAGTATCACTACACAAGTACAGTGTAATGCAGCATTCTCTGCCAATGACGTGAAGAAACTATTGGAAGAGAAGCTGGACAAGCAGCTGGGAAGCTACATTGTTTTTTTCAATAACACTGAGGTCAGTTCTATTCAGGAGATTTTACCTGAAGAAAGTCTCATGAACCAAGGAACAGAACAGACAATCACAGTAGTTCTAAATGACGAGAAGCTTAGATTAGACATAACTAGCATTCAAGCCTCTATACCACGTGTAGAAGGCATGTTTTCACTCCCAGCTGTTGAACCAGGAAGCAAATCTGATAGCACTGAGTCCATATCAGATCAAACAACATCAAATGAAGAACCTCCAGTGAAAAGACGAAGATCGTCAGGTTCACCTTTGACAAAAGTCAATCATTCCAAAGGTGCTGCACAAGGCACGGCTTCCCAGCAAGTGCCAGTTATTAGTTGCGCTTCTAGTTCAGAAAATGGATTGCAAGGACAGCAGATTTCAGTTATAAAAAATGGGTCAGAAAATTGTGCAATCAAAGAGGAGTCTACGTTGATAGACCTCACACAAACACAAGGATCCTTTTCTTTGAAAGGTTTAGCAGGAGTTTCCTCAGAGACATCTACAGCGATCCTAAATGCATCGCCTCAGAACAGCCCGGGAGAAGTGAAATCTCCATCTGCTGCGGATGTTGTGAGCGGAGATGATGAGGAAAAAGCCAAGAGTATTGATGGAAAGCCTTGTCCTGGAAACCGATCAGGGAACAATGGTCAGATCCAACTGTGGCAATTCCTGCTGGAACTTTTAACCGACCGACACAGTCGTCATCTTATCATGTGGGTTGGAGAAAATGGCGAATTTAAACTGAATGATCCTGAACAAGTTGCACAGCAGTGGGGAAGGAGGAAAAACAAACCAGCTATGAATTATGAAAAACTAAGCAGAGCTTTGCGGTATTATTATGATGGAGATATGATCCACAAGGTGCACGGAAAGAGGTTTGTCTACAAATTTGTGTGTGACCTGAAAAATTTACTGGGTTACAGCGCGGGAGAGCTTAGCAGACTAGTACTGGAAGCTGAAGAAACGGCAAACGACGCAGAGCAAGCCACAAATTAAGGACATTAGCTCTCAGCATTGTTTGGTTTGAGTATAATAATCAAACCTTGGATATAACTCAGCCTTTGGAGATGACGACCTCTTTTAAGTTAATCACTCATTCCATCGCTCTCGTACGTACAGTCAAGCTACGCTGCGCGCATTCAATCAAATTTGAGAGAGAGAGGTTATTTCGCGTGTGCGCGCGAGGGAGGATGCCGCGCTTTCCTCTCTGTCAGGCGTAAGTTTAAAAAGAACTCAAAACTCACTCTTTTGAAATAATGTATATATCATTTTCGAAAACTGAAGCCTTTGGTGAACCTTAGGCCACTTGAAGCATAGCTTGACCAAACACGATAGAGCGCTTTCACGTGACGTCACGGCGGCCATGTTGGTGTCCCTAAACAAAGGGAAATTGAACTCTGTTCTCGTGTAAATTTGTTTTGTTTTGTTTTGGTTGAAAAACATGCTCATTGATCACGTGAGTAAAACCGTTCTATGCAATACTAAGCTGTAAAAAACTTGAATAACTTGTTACAATTGAGGAAAATAAGCTTATAAATTTATTACTCCGTTCATGAAATTTAGCGGATATCTTATCGCCATACAGACCCAGTGTTCGTATTTTGTCGTAAATTTATATGGCCATGCTAAATATCATAGGACAAGACGATTTAAGGTCGTTAGTCAGGCTAGGGGTACACGTGCGCCGCTAAGGGTGTGGAACATGAGTGCTGTGTAATGGTTCTTAAAACATGATTTGTAATTGTTGGAGAGATATGCACCTCTCAAAGAAAGATCTTGATAACTTTAATCGCACTGGGAAAATAAAAGGAAACGTGTATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q00422	GA-binding protein alpha chain OS=Mus musculus OX=10090 GN=Gabpa PE=1 SV=2
Q06546	GA-binding protein alpha chain OS=Homo sapiens OX=9606 GN=GABPA PE=1 SV=1
Q04688	DNA-binding protein Ets97D OS=Drosophila melanogaster OX=7227 GN=Ets97D PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000173 (this species only)
Transcription factor family	ETS · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00178 all species →	Ets	Ets-domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000418 all species →	Domain	Ets domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR046328 all species →	Family	ETS family	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11849 all species →	ETS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09441	GABPA; GA-binding protein transcription factor, alpha	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.