Gene detail

Detailed information of amic_s0067.g50.t1 in Acropora microphthalma

Genomic Location: sc0000067_pilon:622694...638204
NR annotation: XP_015756799.1, PREDICTED: uncharacterized protein LOC107336247 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0067.g50.t1

ATGAAGCAGCTTTTGATTTTGTTTTTTGTCTCCGGAATCATATTCGAATTTTCACAGACTGAAAGAATCCGTGACCAGACTGAGAAACGAGTCAAGACTCTTTCATCTGTACAAGCAAATCAGGATTCGCCTATTGTATCTTCAAGCAGAAATTTTATCCAGTTCGGTCTCATGATAGCATGTCACGTGGGCAGAAACCCGCTTGAATACGTCGGTTACGGTTGCTACTGTGGCATTGGCGGGGAGGGAGTACCCAAGGACCAATCAGATAGGTGTTGTCAGCAACATGACCAGTGCTATAACTCAGTGATTGCTTCGGGTGTCTGTCCTTTGGATATCGCCGTGTATCTTATGCCATATAAAAGGAAAAATTGCTATGAGTGTGAAACTGCAAGCTACTATTGGTTTTATGGCGAATGTCGTGAGACTTTGTGCAAGTGTGATTCAGAGGCTGTGCAGTGCTTTAAACGTTCGAAGTTCAATACTGCTGATTCAAGGGCGTTTCGAATTAATCTCACCTTTGACGAAAATCAACCATCGTGTTTGATAAACGACCAAGAAATTAAGAAACAAAGCCCTCACGTGCAGTATTGTGAAAGATTATATAAGCCAAGCACGTGCGTAGAAGTGATTAAACGGTGTTGCAAAACTTTGAACTTTACCTTCGAAGAGTTTGGCTGTGATTATAGCCAGTCCGTGATACTATACAGTAGTAGTTCACTGATGGCAGCGTCGGCAGAAATCGTTGAAGGAACAATGCCAGTGAATTTAAACTTCTTTCAAGATCGCTCTCTTAGCCAAACATCGCAGTCCTCATTGAAATGCAAGGGACAAAAGGTAGAATATTCCCACAAACTCACCGAAAAAAGGAGAAGAGATAGAATGAATATAAGTATGTCAGAAATAGCCCAGCTCCTGCCAAGTTCAGCAGAGCCTAAACAGATGGAAAAAGCTGAGATCTTGGAAAAAACAATCATTTACATCAAGAAACTGCAGGAGATCACTGGCAAGCAAGACCAAGGCTCAGAATCAAAAATTGACGATCGCCAGCTTCCCAATCAAGGAAGTCAGGAAGTGACGACCACGGATGACAAAGTAACCTCTGAGCAGGATGAAGTCACACCAAACTACTGCAGCGGCTTCAGGGACTGCATAAAAGAAGTGTTCCATTGTCTGACGAATGTAGAAGCCATGGACCTTCAACAGTCTTGCTTTCGGCGTCTCATGGTTCACCTCCAGCATGAACTTCAGCTAATCTCTGGAAATGTGGAAAGATCGAAGTTGGACAGCAACAATCACAAGACTGTCCAGAGCAAAAACCATCATATACCATATAATGGTGGCGGGGACAAGTTGTCGTCATTGAAATTGCCTAGCCATGCATTGTCATGCAAAAGGTCCCACGAGACGAGCAATTCTGTTGCAGAGCCCTGTTCGAGTGAGAATCTCATGTCAAAGCGAATGCGTCAAGAGATCTCCTTTGGTAAGAATGGAAGCGGCCATTGTCCTCGTCCACAAGGAGTCGAGAATAGTTTTGGCCAGTTTCCAAACGAAAATGGCGACAGGCCTCGCTGTTCGTCCTTGCAAGAAAGTGCTATTTCTAGGAAAGAGAAGCCCAAGGCATCGGATGGTGTGGAAAATGCCTGGGTTAGAAATGACTCCCCCTATTCGCAGTTGGAAAGTTATGCTTCAGAGAGGAAAGATGGAGTTTCCAATGGAAACATCTCTGAGAGGCCGGATACGGATGGTAGTAGAAGCGAGAATGACAGCTCTAATGGCAACCACAAGTTGTTCGGCGGCGGCCAAGACCTGCCTCTTTTAGCCACGCCTATCTCACCGAGGACCCCATTCGTTCCCAGTCCATACACGGTAGCGACGTATGCACTCCACCCATCCGGCACCCACTATCTGCCAGTTGTTCTCCAGCTGCCTGTAGTGCCACCATTTGCTGAAATGAAGGGGCGTTTGAATTCGACCCCCAATGGCTCTGTTGCAGCAATGAACGGCATGAGGATGGGCAATTTACAGTACCCCTATTTCCCTTACGGGATTCCTCTCGCCCCGCAGGTTGCTGGCAATATGATGGCCATGAATAATCTTCGTAGCACCTTGTGCAAACAGGAACCTGAAAGCCAGAAACGATGTGACGTGAAGCCGAAGGAAATGGAATCATCTTGTAACGATGATGAGAACGCTTCAGTCAATGTATGTAGTTCAACTGAAAAGTTATTTTAA

Transcript

amic_s0067.g50.t1

GTAGGTTCAGTTTCTAGTAATGTGACCAAATATTGTGCTTAAGGTAAGGGAACGACTTCGTTTCGACCATCTGCTTTATAATTACGTTTCAATGGTCAATCATTATACACCGCTCCCATTTTCTAACTGTTTAACCAGAAGGTAAGTGAAATAATGGAACATTACTTTTATTTACATTAAAGTTTTCGATTTATTTAATTTTCAAAGGAATGATGCAATATATTTAATGTCGAGCGTTTTATTTTTAATTGAAGCGAGTTTTCTTCTGCAGAGCCTCCTTCGTGACAATTTTTACTTGTGTTCTGACTTGCCTGCAACTTCTACTCACAATGAAGCAGCTTTTGATTTTGTTTTTTGTCTCCGGAATCATATTCGAATTTTCACAGACTGAAAGAATCCGTGACCAGACTGAGAAACGAGTCAAGACTCTTTCATCTGTACAAGCAAATCAGGATTCGCCTATTGTATCTTCAAGCAGAAATTTTATCCAGTTCGGTCTCATGATAGCATGTCACGTGGGCAGAAACCCGCTTGAATACGTCGGTTACGGTTGCTACTGTGGCATTGGCGGGGAGGGAGTACCCAAGGACCAATCAGATAGGTGTTGTCAGCAACATGACCAGTGCTATAACTCAGTGATTGCTTCGGGTGTCTGTCCTTTGGATATCGCCGTGTATCTTATGCCATATAAAAGGAAAAATTGCTATGAGTGTGAAACTGCAAGCTACTATTGGTTTTATGGCGAATGTCGTGAGACTTTGTGCAAGTGTGATTCAGAGGCTGTGCAGTGCTTTAAACGTTCGAAGTTCAATACTGCTGATTCAAGGGCGTTTCGAATTAATCTCACCTTTGACGAAAATCAACCATCGTGTTTGATAAACGACCAAGAAATTAAGAAACAAAGCCCTCACGTGCAGTATTGTGAAAGATTATATAAGCCAAGCACGTGCGTAGAAGTGATTAAACGGTGTTGCAAAACTTTGAACTTTACCTTCGAAGAGTTTGGCTGTGATTATAGCCAGTCCGTGATACTATACAGTAGTAGTTCACTGATGGCAGCGTCGGCAGAAATCGTTGAAGGAACAATGCCAGTGAATTTAAACTTCTTTCAAGATCGCTCTCTTAGCCAAACATCGCAGTCCTCATTGAAATGCAAGGGACAAAAGGTAGAATATTCCCACAAACTCACCGAAAAAAGGAGAAGAGATAGAATGAATATAAGTATGTCAGAAATAGCCCAGCTCCTGCCAAGTTCAGCAGAGCCTAAACAGATGGAAAAAGCTGAGATCTTGGAAAAAACAATCATTTACATCAAGAAACTGCAGGAGATCACTGGCAAGCAAGACCAAGGCTCAGAATCAAAAATTGACGATCGCCAGCTTCCCAATCAAGGAAGTCAGGAAGTGACGACCACGGATGACAAAGTAACCTCTGAGCAGGATGAAGTCACACCAAACTACTGCAGCGGCTTCAGGGACTGCATAAAAGAAGTGTTCCATTGTCTGACGAATGTAGAAGCCATGGACCTTCAACAGTCTTGCTTTCGGCGTCTCATGGTTCACCTCCAGCATGAACTTCAGCTAATCTCTGGAAATGTGGAAAGATCGAAGTTGGACAGCAACAATCACAAGACTGTCCAGAGCAAAAACCATCATATACCATATAATGGTGGCGGGGACAAGTTGTCGTCATTGAAATTGCCTAGCCATGCATTGTCATGCAAAAGGTCCCACGAGACGAGCAATTCTGTTGCAGAGCCCTGTTCGAGTGAGAATCTCATGTCAAAGCGAATGCGTCAAGAGATCTCCTTTGGTAAGAATGGAAGCGGCCATTGTCCTCGTCCACAAGGAGTCGAGAATAGTTTTGGCCAGTTTCCAAACGAAAATGGCGACAGGCCTCGCTGTTCGTCCTTGCAAGAAAGTGCTATTTCTAGGAAAGAGAAGCCCAAGGCATCGGATGGTGTGGAAAATGCCTGGGTTAGAAATGACTCCCCCTATTCGCAGTTGGAAAGTTATGCTTCAGAGAGGAAAGATGGAGTTTCCAATGGAAACATCTCTGAGAGGCCGGATACGGATGGTAGTAGAAGCGAGAATGACAGCTCTAATGGCAACCACAAGTTGTTCGGCGGCGGCCAAGACCTGCCTCTTTTAGCCACGCCTATCTCACCGAGGACCCCATTCGTTCCCAGTCCATACACGGTAGCGACGTATGCACTCCACCCATCCGGCACCCACTATCTGCCAGTTGTTCTCCAGCTGCCTGTAGTGCCACCATTTGCTGAAATGAAGGGGCGTTTGAATTCGACCCCCAATGGCTCTGTTGCAGCAATGAACGGCATGAGGATGGGCAATTTACAGTACCCCTATTTCCCTTACGGGATTCCTCTCGCCCCGCAGGTTGCTGGCAATATGATGGCCATGAATAATCTTCGTAGCACCTTGTGCAAACAGGAACCTGAAAGCCAGAAACGATGTGACGTGAAGCCGAAGGAAATGGAATCATCTTGTAACGATGATGAGAACGCTTCAGTCAATGTATGTAGTTCAACTGAAAAGTTATTTTAAAATCTTGTAAATAGCGGCTGTAAACGTTTGAATTATTGTTTATCATGCCAGCAAGGTAAATATGTTTAAGTTATATGTTTGAGTTAAAAGCTAATTTTTTTCATGATCAAATTGCCTTGTATTGTTTTTGACAACAGAGATTGTTCTATATATTGCTGGTTTTGCTTGTAAATCGTTTTGTTAAAGTTTTGAAATCTCAGTGTCAGTAATATTTATTTAAATTGTGGGACCAGTGTTTCGAAAACTCACTGTAATCTTGAAAAGGTTTGGTTATCAGAGATGCCACTGCAGAAAAAAGAAAAACGTCTAAAACGAAAACGAAGACAACTTGACAATCCAGAACCATTGCAAAAGTCGGTTCGTTGTTAATGTCTATGAATTCAGTTCTTCGACTAATGGGCAATACAGTAAATGAAACTACAAAGCAATCAAACTGAATTCAGTGCAGGCAATTAATTATATGTGTGCTACTCAAAGTGCGAAAAAAAGGTCTGCGTCCAAGGAATGTCGGATTCGTTTGTCCAATGACAATTAAGAAAAGGTGGAGCGAACTTTTCAAACTTATCAGCTTAGACTGTACATAGACTGTATTGTAACATAAAAATATAGAATAATATCGCAAAGAAAGTCGTAAAGCATGCGCAAATAAATTACAGGGAACTGCATATCGGTCAGCAACGCTTTTTCCTATCTTGTCGTATCGTTCGTCTCGTGCCTCAAATTAACTTGGAAGAATTTTATCGTGGAGTAAGAATTAATTCAAATGCTTAAATTATGAGCTATGTAATTTGGTATTGCTTGTACTAAATCGAGAAAGCGCTGGCAGAACCGTATTTTATTGCTATTATATTGCAAAGGATATCACAAGAGTTTGTTTCTTGCTGAAATAAAGTGCCAGTAAGTGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0DY42	Phospholipase A2 OS=Calliactis polypus OX=656064 GN=c56806_g1_i1 PE=1 SV=1
D2X8K2	Phospholipase A2 A2-actitoxin-Cgg2a OS=Condylactis gigantea OX=47073 PE=1 SV=1
Q8WS88	Phospholipase A2 A2-hormotoxin-Apt1a OS=Adamsia palliata OX=176095 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011441 (this species only)
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00068 all species →	Phospholip_A2_1	Phospholipase A2	Domain	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF07527 all species →	Hairy_orange	Hairy Orange	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001211 all species →	Family	Phospholipase A2	Interproscan
IPR016090 all species →	Domain	Phospholipase A2 domain	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR033113 all species →	Active_site	Phospholipase A2, histidine active site	Interproscan
IPR036444 all species →	Homologous_superfamily	Phospholipase A2 domain superfamily	Interproscan
IPR003650 all species →	Domain	Orange domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11716 all species →	PHOSPHOLIPASE A2 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004623 all species →	Molecular Function	phospholipase A2 activity	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016042 all species →	Biological Process	lipid catabolic process	Interproscan
GO:0006644 all species →	Biological Process	phospholipid metabolic process	Interproscan
GO:0050482 all species →	Biological Process	arachidonate secretion	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0067.g50.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.