Gene detail

Detailed information of amic_s0067.g86.t1 in Acropora microphthalma

Genomic Location: sc0000067_pilon:1121500...1128681
NR annotation: XP_029210187.2, transcriptional repressor NF-X1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0067.g86.t1

ATGTCAGAAGAAAGTTCTGGAGTAGCTTCTGCCATGAAAGCGGGTAATGAGACAAGCTCAGTAAATGGGGCAGTGAACAAAATGAGTGAGAAAGGGCCAAGTGTGCACAAACGTAGTCAACAGCGTAGATGGAAACAACCTCATGACAAAAATGGTAGCCACTCTAGAGGTAGTCAAAGACATAACAACAGACAAGCTGGTGTAAGAGGTCGTCAGATGGACAGGGGTCGTGAAGACCGCAAGAGATTGCAAGAGTTAGAGCAAGGAGCTTGTTACCCTGTTGACACAGCACCTATTATGTTGGCTGCTCGTCAGCAGCAATCAGGAGGTGAAAGGGACGCAAGATATTCTGATACTAAGGGAGCTGTTACAAATGGAAATAATAATAATAATTGTGCTCCAGATTCTGCAAGGTTTAAGGATTATAGAGATCAAGCCAGTGGAGAAGATTTCAGGAAAAACAGTAAATATAAGTTGGAAAACTCGCAACATGTTTTGGAGGATAAAAGGAAAGCATCTAGGAGAGGAAAACAATTCCCTTCCTTGTCAAGAGGACAATATAGAGGAAGAGGGATATCTAGGTGTTATCCTACCTTCGGTAGCTTGCAAGTCAACCATGGACACCAAGACTCTTTTTCCCACAACAAAACATCCAAAAATTCTTTAGATTTTAGCCAGGAAGATCAACTGGGTGATTTAACACAAGCTAATTACAGCAGAGAACTAGTGAACTCTGACAATAAAGACACTGAAAGGAGGTCTAACAGAACAAAACCAAGAGGATTTGACAGACAAAAGAGAGGCTATGGAAGTCAGAAGAATGATGTTATTCGCGCTTTGAGTCACCTTAATCCTGTTCAGTCATCACAAGCAAGTTCCTTGTGTGAGCAGCTTAGGAATGAAACTTATGAGTGCATGGTTTGCTGTGAACGTGTGCGATGCACCGCTGCTGTTTGGAGTTGTGACAGCTGTTTTCATGTGTTCCATTTGGCTTGTGTGAGGAAGTGGGCCAGATGCCCAACTGCTACAGCTAACTTGGAAGGAGAAAATGGTGGCTGGCGATGCCCAGGATGTCAAAACATTTCTCAAGGCATTCCAAGTATTTACAACTGTTTTTGTGGTAAAGTCCTTGATCCTGTGTGGAGGCCCAGTGAAGGTTTAACTCCGCATACATGCGGAGAACTTTGTGGGAAACGGCGCGCAGATGCTTCTTGCCCTCATCGATGTAACCAGCTGTGTCACCCTGGACCTTGTCCAAGCTGCCCTGTTATGATAACAAAGCAATGTGCCTGTGGAAAGACAAGCAGCAGAGTAAGGTGTGGCCAGGCAACGACTGTGTTATGTCAACAAGTGTGCAACAAGGTTCTGAACTGTTTCACCCATAGATGCACACGAATCTGTCACACAGGGCCGTGTGAAGACTGCCAAATAGAGGTGCAACAATCATGCTACTGTGGAAAACAGCAGAGAGACACTCTTTGTGGAACTGGAGAGGCAGGTTTTGTAAATAGAGATGGAAAATCTGGTTATTTCTCGTGTCAAAGCAAGTGCTCTAAGAAGCTTGATTGTGGAAATCATTACTGTCAAAGGATATGTCACCCTGGTGATTGCGACGAATGTCCCCTTAAACCAACTCTTGTAACCTTCTGTCCCTGTGGTAAAACTCCAATTTCAGAGTTGCTGAATGAAGCAAGAATGTCGTGCCTCGATCCAGTGCCAACCTGTGGATCTACTTGTGACAAAGTTCTCCCTTGCAGTCCTCAGAGAGAACAAGGAAACCATTTATTAACCGAGGAAGAGCACCGTTGCAAAAAGGAGTGTCACTTTGGGGAATGTGGTCCATGTGATGGCATGACAAAGGTTAAATGCAGATGTGGAGCACGTGTGAAGGAGATCCCTTGCATACAGAAAGGCATGGAAGAATATCGATGTGAACGGCGTTGTAACAAGAAAAAGAGTTGCGGAAAGCACAAGTGCGGTCAAAGATGCTGTGTGAATACCGAGCACAGATGTGAGTTGCTTTGCAGGAAAAAGTTGTCCTGTGGGTTACACGAGTGCTCGGAGCCGTGTCATCTGGGTTATTGCCCACCCTGTCTGATGTCAGGATTTGATGAACTGTCATGTCACTGTGGTGCAACTATAATGCTACCACCCATCCCCTGTGGAACACGGCCCCCAGAGTGTGATAAGCCTTGTTCCAGAACACATGCTTGTTCTCATCCAGTGAATCATCCTTGCCATAGCGAAGAAAAGTGCCCTCCCTGTCCATATTTGACAACGAAAAGGTGTATGGGAGACCATGAGTTCCGTCACAACATTCCGTGTCATGTGAAATTTATCTCTTGTGGAATGGTTTGCGGCAAACTGTTGACTTGTGGACACAAGTGCCAAAAAATATGTCACAAACCGCCTTGCTTGGGTCCTGGAGAGACCTGTCTTCAGCCTTGTGATCAGCTGCGTAACGTGTGCGGACACAAATGTGCTGTTCCCTGTCACTTTGGCAGTGGTTGTCCAGCTGTTCCATGTGAAGCCAAGGTAACTGTACACTGTAAATGCGGCCATCGCTCAGAGGTTTTTCCTTGCCTTCAGGGTGGTGACCAAATGGCTGTTACAAAGGCCTTTCAGCGCATTGCTACAGAAACACTGGCTAACAAGATGAAAGATTTGCAGTCTGGCCAATGTGCTGATGTTAGTCGCATTGTTAAAGCAGATGATAAACATCCAAGGCAACTGGATTGCAATGACGATTGTGCCATCTACGAGCGAAACAAACGACTCGCCGAAGCACTTGATATTGAAAATCCTGATCTGTCCCAACATGGAGGGAAAATACGATATTCGCCCTTTCTTGTTGCTGAAGCCAAGCAACGTTTAGATTTTCTCAAATCTGTCGAGGACGCCTTTGAAAATCTGGTGCAGACAACATTGAAACTGTCTGTTTCTCAACGTTCACATTCATTCTCATCAATGAACTCAAATCAGAGAAGACTTATCCACGAACTTGCCGTGTTTTACAACTGCTCCAGTCAGAGTTATGATCGAGAACCCAAGAGAAACACAGTGATCACTGCTACTAAGGGATCTCATCTTCCAAACGTGAAATTGTCAACTCAGATAGAGAGAGAAATCAAACCACCCGCTCCACGCCCAATCCCATTCTTGCCTTCACGAGTGGACCAACAACCGAAACCATTCTCAAATCAAGCACCAAGGAAGACCCAGGCATGGACACAGCTTCCAGATTACTTCAGTGATGACTTTGGTGAATGA

Transcript

amic_s0067.g86.t1

GACTCATAAAGAAATCACTGTCTGAACTGAAATTTTGTGTACAGTGTGAAAGTTTGTTAGCTTAAAAGCTATGTCAGAAGAAAGTTCTGGAGTAGCTTCTGCCATGAAAGCGGGTAATGAGACAAGCTCAGTAAATGGGGCAGTGAACAAAATGAGTGAGAAAGGGCCAAGTGTGCACAAACGTAGTCAACAGCGTAGATGGAAACAACCTCATGACAAAAATGGTAGCCACTCTAGAGGTAGTCAAAGACATAACAACAGACAAGCTGGTGTAAGAGGTCGTCAGATGGACAGGGGTCGTGAAGACCGCAAGAGATTGCAAGAGTTAGAGCAAGGAGCTTGTTACCCTGTTGACACAGCACCTATTATGTTGGCTGCTCGTCAGCAGCAATCAGGAGGTGAAAGGGACGCAAGATATTCTGATACTAAGGGAGCTGTTACAAATGGAAATAATAATAATAATTGTGCTCCAGATTCTGCAAGGTTTAAGGATTATAGAGATCAAGCCAGTGGAGAAGATTTCAGGAAAAACAGTAAATATAAGTTGGAAAACTCGCAACATGTTTTGGAGGATAAAAGGAAAGCATCTAGGAGAGGAAAACAATTCCCTTCCTTGTCAAGAGGACAATATAGAGGAAGAGGGATATCTAGGTGTTATCCTACCTTCGGTAGCTTGCAAGTCAACCATGGACACCAAGACTCTTTTTCCCACAACAAAACATCCAAAAATTCTTTAGATTTTAGCCAGGAAGATCAACTGGGTGATTTAACACAAGCTAATTACAGCAGAGAACTAGTGAACTCTGACAATAAAGACACTGAAAGGAGGTCTAACAGAACAAAACCAAGAGGATTTGACAGACAAAAGAGAGGCTATGGAAGTCAGAAGAATGATGTTATTCGCGCTTTGAGTCACCTTAATCCTGTTCAGTCATCACAAGCAAGTTCCTTGTGTGAGCAGCTTAGGAATGAAACTTATGAGTGCATGGTTTGCTGTGAACGTGTGCGATGCACCGCTGCTGTTTGGAGTTGTGACAGCTGTTTTCATGTGTTCCATTTGGCTTGTGTGAGGAAGTGGGCCAGATGCCCAACTGCTACAGCTAACTTGGAAGGAGAAAATGGTGGCTGGCGATGCCCAGGATGTCAAAACATTTCTCAAGGCATTCCAAGTATTTACAACTGTTTTTGTGGTAAAGTCCTTGATCCTGTGTGGAGGCCCAGTGAAGGTTTAACTCCGCATACATGCGGAGAACTTTGTGGGAAACGGCGCGCAGATGCTTCTTGCCCTCATCGATGTAACCAGCTGTGTCACCCTGGACCTTGTCCAAGCTGCCCTGTTATGATAACAAAGCAATGTGCCTGTGGAAAGACAAGCAGCAGAGTAAGGTGTGGCCAGGCAACGACTGTGTTATGTCAACAAGTGTGCAACAAGGTTCTGAACTGTTTCACCCATAGATGCACACGAATCTGTCACACAGGGCCGTGTGAAGACTGCCAAATAGAGGTGCAACAATCATGCTACTGTGGAAAACAGCAGAGAGACACTCTTTGTGGAACTGGAGAGGCAGGTTTTGTAAATAGAGATGGAAAATCTGGTTATTTCTCGTGTCAAAGCAAGTGCTCTAAGAAGCTTGATTGTGGAAATCATTACTGTCAAAGGATATGTCACCCTGGTGATTGCGACGAATGTCCCCTTAAACCAACTCTTGTAACCTTCTGTCCCTGTGGTAAAACTCCAATTTCAGAGTTGCTGAATGAAGCAAGAATGTCGTGCCTCGATCCAGTGCCAACCTGTGGATCTACTTGTGACAAAGTTCTCCCTTGCAGTCCTCAGAGAGAACAAGGAAACCATTTATTAACCGAGGAAGAGCACCGTTGCAAAAAGGAGTGTCACTTTGGGGAATGTGGTCCATGTGATGGCATGACAAAGGTTAAATGCAGATGTGGAGCACGTGTGAAGGAGATCCCTTGCATACAGAAAGGCATGGAAGAATATCGATGTGAACGGCGTTGTAACAAGAAAAAGAGTTGCGGAAAGCACAAGTGCGGTCAAAGATGCTGTGTGAATACCGAGCACAGATGTGAGTTGCTTTGCAGGAAAAAGTTGTCCTGTGGGTTACACGAGTGCTCGGAGCCGTGTCATCTGGGTTATTGCCCACCCTGTCTGATGTCAGGATTTGATGAACTGTCATGTCACTGTGGTGCAACTATAATGCTACCACCCATCCCCTGTGGAACACGGCCCCCAGAGTGTGATAAGCCTTGTTCCAGAACACATGCTTGTTCTCATCCAGTGAATCATCCTTGCCATAGCGAAGAAAAGTGCCCTCCCTGTCCATATTTGACAACGAAAAGGTGTATGGGAGACCATGAGTTCCGTCACAACATTCCGTGTCATGTGAAATTTATCTCTTGTGGAATGGTTTGCGGCAAACTGTTGACTTGTGGACACAAGTGCCAAAAAATATGTCACAAACCGCCTTGCTTGGGTCCTGGAGAGACCTGTCTTCAGCCTTGTGATCAGCTGCGTAACGTGTGCGGACACAAATGTGCTGTTCCCTGTCACTTTGGCAGTGGTTGTCCAGCTGTTCCATGTGAAGCCAAGGTAACTGTACACTGTAAATGCGGCCATCGCTCAGAGGTTTTTCCTTGCCTTCAGGGTGGTGACCAAATGGCTGTTACAAAGGCCTTTCAGCGCATTGCTACAGAAACACTGGCTAACAAGATGAAAGATTTGCAGTCTGGCCAATGTGCTGATGTTAGTCGCATTGTTAAAGCAGATGATAAACATCCAAGGCAACTGGATTGCAATGACGATTGTGCCATCTACGAGCGAAACAAACGACTCGCCGAAGCACTTGATATTGAAAATCCTGATCTGTCCCAACATGGAGGGAAAATACGATATTCGCCCTTTCTTGTTGCTGAAGCCAAGCAACGTTTAGATTTTCTCAAATCTGTCGAGGACGCCTTTGAAAATCTGGTGCAGACAACATTGAAACTGTCTGTTTCTCAACGTTCACATTCATTCTCATCAATGAACTCAAATCAGAGAAGACTTATCCACGAACTTGCCGTGTTTTACAACTGCTCCAGTCAGAGTTATGATCGAGAACCCAAGAGAAACACAGTGATCACTGCTACTAAGGGATCTCATCTTCCAAACGTGAAATTGTCAACTCAGATAGAGAGAGAAATCAAACCACCCGCTCCACGCCCAATCCCATTCTTGCCTTCACGAGTGGACCAACAACCGAAACCATTCTCAAATCAAGCACCAAGGAAGACCCAGGCATGGACACAGCTTCCAGATTACTTCAGTGATGACTTTGGTGAATGATCTTTCAGTGATCGTCGACTAGGGGCTTGTGTCCACATTATTTATATTTGAATATGTACCTTTCTAACAAAAATGCACATTTCCGAAAATGCACGAAGTCATTGACGAATCGACATAGGActgatcccaaatgttcagaacatggaaggcgctttcctctgctagctcccaatttttggatgaagtagtttgttttgatagtgcttatacccaggagagtgatttatccggagcaatatttacctttttaacaagcaagtcctgTTCTTTCATTTACCAGACTCAAAACTCACCGATGTCGCAATAACTATTGTGAGACTGCATTCATTTGGCATTGTCGTCGTGTTGGATGCACAAGTAAAGTCGAGGTAGACCCCATAATTTTCCTGAAGCTCAATGGGAAGAAATCCTTGCTTGTAATAAGACTTGAATCCAGCGTCAATTCATTTTTTCTCATGCTAGTGTGGTTAGACAAAATTATTATATGAATTTTTCTAATTAATTGAAAACTCGTGGAGTGACTGAAGTAAAGCGAATGGCTTTGGTTTCTATCACTTACAACGTTTTGGAATGTAACAGCTTCTCTTCTGGAAAATGTATTTTCTGAAACCTGAACTTCAGAGAGATCACGTGATGTATCGTTCCGTTCGTTGAAATTAGGGCTTTAATTAAGGAAAGTCGATGAAGATAGACTATCTAACGTTATCCTTTCTTCAAAGCGAATTAAGGAAGTTAAAGTTGGTTTTGGTTTATACAGAACAAAAATGAGTCGTCGTTTGTTGACCCTCAGTATCATAATACGCGAATAAATTACTCGAGTCAGAGGTGTTCATTTGATTCCTCTTGTAGTTAGGATGGGGTGTTGAAGAATGAGTTATATTCAAGGGTCATGCGGCCCTCTTTTTTCTTTCAAGTAGTGAGAGGCCACAATTTAGAGGCTGTTAAGGTTTAACTGGAGCGCAATGTATTTGTTGCCTGTACAGCCTGCGAAGTACTGAAGTTGAAGTAAGTTGGGATAAATGTGAAATGATCACTTCGGTAATGCTGAGCGAAGATTGCACGTGACTTTACGTTCTCTTCGAGTATCTCAGTTAATGGACATCGGACAGCCGGCAattagggagttcaagaagctaccactcctgctgcaacgaaaacgtcattttaaaatagaactttgctttacgt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q12986	Transcriptional repressor NF-X1 OS=Homo sapiens OX=9606 GN=NFX1 PE=1 SV=2
A6QLA0	Transcriptional repressor NF-X1 OS=Bos taurus OX=9913 GN=NFX1 PE=2 SV=1
B1AY10	Transcriptional repressor NF-X1 OS=Mus musculus OX=10090 GN=Nfx1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001383 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01424 all species →	R3H	R3H domain	Domain	Interproscan
PF01422 all species →	zf-NF-X1	NF-X1 type zinc finger	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000967 all species →	Domain	Zinc finger, NF-X1-type	Interproscan
IPR001374 all species →	Domain	R3H domain	Interproscan
IPR036867 all species →	Homologous_superfamily	R3H domain superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR034078 all species →	Family	Transcription factor NFX1 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12360 all species →	NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000977 all species →	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12236	NFX1; transcriptional repressor NF-X1	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.