Gene detail

Detailed information of amic_s0067.g90.t1 in Acropora microphthalma

Genomic Location: sc0000067_pilon:1167920...1173219
NR annotation: XP_029210185.2, glycoprotein 3-alpha-L-fucosyltransferase A-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0067.g90.t1

TAATTTCGCAAATAGCTTTCAACATAAACAGGCGAATTACATAAAAGAGAAAAAAATCCATCCTCGCAGATATTGGATTGTTTTTCGAGGAGAAAAGTTGAAATTAGCTGCTTCATCTGGTTTCTGGACACCTGTCATCGGGTGTTGTTCCACAATTACATTACCTGTTGCAAGCTTTTATCCAAATCACCTTAAAGCGGGCCTCAAAAGGTTCTCTTTGGTATCTTCAGTTCTCGCGACTGGTCATTTCTGGTTTATCAATCATTTCTTTCAATAAATTCTCCGTGGTGAAAATGTATAAGAACGGTCGCATTCGATACTACTCATCTAACTTTGTCATCTTTTGCTTGGGCATATGTTTTGTCTTCTATATTACTTTATACAAGAATGTGTTTTCATTCGATAAATCGTATTTTTTAGACATCTCTTTGGGAGAACGTAGTGCGAGACAACAGCCACCAAGACGTAAGTTGATTTTGCTATTCACGCCATTTTTTGGGGCAGAATGGAGAGACCATTCGACTTTAGGACCGTCGAGTACATATTTTCAGGAAGGGAGACAGACATTTAAGGATTGTGAAGTGTCCAGCTGTGCAGTGACGTACAACAAAGAAAAGATAATGGAAGCGGACGCAGTTGGCTTTCACGCAAGAGACATGCCCTCTATCCTTCCAGCTCAAAGAACCTCGAAACAAATCTGGTTTTATTTTGTGCTGGAAAATCCTTTAAACGTGTTCATCAACGATGATGGTTACGCAAATGTATTTAATTGGACAATGTCTTACAGTAGAAACTCTGAAATTTATACACCTTACGGGAAATACATCGTAACTTCAAAGATTCCTAACAACGGCTTTGACAGTTTTGACTTGGCTACGAAAGACAAAAAAGTAGCTTGGCTAGTGAGTAATTGCTATGCGACCGAACGAAGAGAATATGTTGAGGAATTAAAAGAATACATTGACATTTCCGTATATGGACTTTGCGGTGATAAGAGAAGTTGTCCCGCAAGACGACACTCCAGCGTTTGCAATGCCTTGCTAAGAAGACACAAGTTTTATCTTGCCTTTGAAAACGGTAACTGCCCTGAATATATTACAGAAAAATATTGGGTAAACGCTATCGATAATAACATCTTGCCGGTAGTCATGGGTGGTGCCGATTACAAAGCGCTCGCGATTCCGAATTCATATATAAATGTGGAAGACTTTGAATCTCCCAAAAAACTTGCTGAATATCTCCTGTATCTCGATCGCAATGACACTGCCTACAAAGAGTATTTTACATGGAAGAGATTTTACCAGCATGTGCCACCAAAATTTGCTTGCTCTTTATGCAAACAGTTACATAATAAGAGTCTCCTAGCGTCGCCAAGAATGTATAAAAACATGAAAATGTTTTGGGATGCAGCTAGTTGCAGGAAATTGAATCTTTTACAATAGCGGCTTTCAATAAACTGATGGTAATTACTTTGAAATGAATCAGTTTCAGCATTACTGTACATCGAATCCTTTTTTCCTGAAGCGAAGTTTGTATGTTTTCCAGTGCACAACAGAAGCCGATATCGAAATTGTGTGAAATTTCTCTTATTTTGTCACATGTGACCACGAAGGTATCAATTTTCACTGTGGTGGCCTTATCTTTGGATAGATATCTAGCAGTGAAGCTTTCGTGGCGGTACAATAGCCTTGTAACTGTTCGAAAGGTGACTGTTTGTAACATTGGCGTTTGGCTTTTTTGTGGCATATTTGAAGCAACTCATTCTGAAGTTGATTCTGAAAGCGCTTTCCACTTGATAGATCTTCATCTTCAAACCACAGTTCCACTGATAATCCTTTGTGCTATTTATACCGCCACTTACCACGAATTTCGACGGCATTCAAGAAACGTTGTTTTTGTACAATCGAACGCCGATGGCAGATCCCGTACTTCGATTAGAAACATAAGACTGGAAAAGAAGATCGTTTGGACAATTTTGATGATTATCATTGTTCTGTTTATATCGCTATTACCTTATTTAATCACCAATAATTTGGAAGAGCGTTGTTTTGAAAAGGGAAGCAGTGAATGTAGTGAGTCTAGCTTTACAAGTGTAAAGGTTCTTTCGATACCTTTGTTGTGTGTAAGCTGTAGTTTGAACCCATTCCTATACGCTTGGAAAATACCACATTATAAACAATCCATGAGACTGGTTGCAAATAGAACATGTTGTAAGTGTCTACGACAAAATCAAGCCAGAAACATGATGACATTGAATAGACCCTCTGTTCTCGCAACTGAAAGTTTATTTGAACAGATGAGTCCTCCAGTTGTTGTTGCCGAGGTAGAGCAAGACTGTAAACTCCGTTGAAAAGAAACTGACCTATATTTCTGAGCTATTGACATAATTAAAACACTGGGACACAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VUL9	Glycoprotein 3-alpha-L-fucosyltransferase A OS=Drosophila melanogaster OX=7227 GN=FucTA PE=1 SV=2
Q11126	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase FUT3 OS=Bos taurus OX=9913 GN=FUT3 PE=2 SV=2
G5EE06	Alpha-(1,3)-fucosyltransferase fut-5 OS=Caenorhabditis elegans OX=6239 GN=fut-5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000206 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17039 all species →	Glyco_tran_10_N	Fucosyltransferase, N-terminal	Domain	Interproscan
PF00852 all species →	Glyco_transf_10	Glycosyltransferase family 10 (fucosyltransferase) C-term	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038577 all species →	Homologous_superfamily	GT10-like, C-terminal domain superfamily	Interproscan
IPR031481 all species →	Domain	Fucosyltransferase, N-terminal	Interproscan
IPR001503 all species →	Family	Glycosyl transferase family 10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48350 all species →	ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0008417 all species →	Molecular Function	fucosyltransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0067.g90.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.