Gene detail

Detailed information of amic_s0068.g13.t1 in Acropora microphthalma

Genomic Location: sc0000068_pilon:129756...139088
NR annotation: XP_015757770.1, PREDICTED: tyrosine-protein kinase SRK2-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0068.g13.t1

GTTTAAGTATGAAAGAGGAAGGGACTGGGGAGAAGTTAGAGGGAGGGCGAAATCCCGGAACTGACCTGAAGCGCTGAAGGTGATTTAAGCGACGATCGTTCGGCGATCGCACTGAGAAAAATTCACTCTTATAAGCTCTAGTTTTGGCCCCTTTGGGATCATGGGGAATTGCTTGGGAAAGAGCTCTCATCAAAATGTAGACACCGATCTTAAGAAGGAACAACCAGACGAAAACTCCCCGCGTAGCTTGAAGGACGTTCAAGCAGCAATCGACAGTCAGGACAATGCAGCTTCGATTAAAGAGAGATATGTACCCGAACCACCGATTCTTTCAGTACCGGAGAGTCCAACGAACATCAAATCGCTGTACGTCGCTCTTTACGACTACGATGCCCGAACTCACGAAGATCTTAGCTTCAAAAAGGGCGAAATTCTCGAGGTAAACAACGACGATTTGGCTAATGACTGGTGGAGGGCTCGGTCCCGCAACACGGGAAAGGAAGGGTTCGTTCCTAGCAATTATTTGGCCCTTCAACAAACTTTGGAAGCGGAAGACTGGTACTTTGGTGATATCAAGCGGCCTGAGGCAGAAAAAATATTAAAGATGGCGCCAAATGAGCAAGGGGCTTTCTTAATACGCGACAGTGATAAAGGAGGATATGCCTTGTCAATGAGAGACGGAGACATCATCAAACATTACAAAATCCGCACATCTGAAAGTGGGAGTTACTTCATAGCCCACAACAACCAGTTTTCATCATTGTTTGAGTTGGTTCAGCATTACTCCACCAATGCAGATGGGTTATGCAATTGTCTTAGAAGCCCTTGTGTCAAGGCTGAAAAACCTCAAACTGTCGGATTATCACACGATACTGTTGATGCCTGGGAAATAGAACGCAGTACTCTTAGATTGATAAAGCGTCTTGGCCATGGTAACTTTGGTGAAGTATGGGAAGGAACCTGGAATGACACTACAGCGGTGGCCATTAAGACATTGAAGCCCGACACAATGAATCCCGCAGCATTCCTTGAAGAAGCAGAGCTCATGAAAAAGCTGATCCACCCGAAACTAGTGCAGCTGTATGCAGTTTGTTCCAAAGAGGAGCCCATTTATATTGTCACTGAATTGATGCCGAAAGGAAGTCTCCTTGACTACTTGCGAGGTGATGAAGGACGAAAGCGGAAGATGGAGCAGTTGATTGACATGGCTTCCCAAATTGCCGCAGGAATGGCTTTTCTTGAGAAGCACAACTATGTCCACAGAGATTTGGCTGCCAGAAATATTCTAGTGGGTAATAACAACACCGTTAAAGTTGCAGATTTTGGTCTGTCACGAGCTGTTGAAGATTTCTACGAAGCACACGAAGGAGCAAAGTTCCCCATAAAGTGGACTGCACCAGAGGCCTGTCTCAAAAATCAGTTTTCAATCAAGTCTGATGTATGGTCATTTGGAATCTTGCTGACAGAGCTTGTGACATATGGAAGGGTGCCATATGCTGGAATGAACAACAAACAGGTTGTGGAAGAGGTTGAACGTGGCTATCGCATGCCCAAACCTAACCTATGTCCTGATAAGTTGTATGACATAATGATGACATGTTGGCGAGAAGAGCCCATGGAACGTCCAACCTTTGAAACACTCCAATGGCAACTGGAGGAGTTTTACACAACAGATGGTAAACAGTACAAAGAATTGGCAAATTAACTAGTTTTTCAGTATGGCATGGAAGCAACTTACCACCTCATTTGTATAAAAACATTGTTGGAAAATCTATGGTAATTTGTCTTCCTAGAACCTTTGTCAGTAGCTTCAAATAAATAGTAATCTCCAGGTTTGTGAAACAGTATTTTATTCTTTGTATGTGTAGTTTATATGGAGAACCTCTTGAAAAATTGACCTGTGCACGGGGAAAATAACCTTTGTAAACAGTTTGCAAGGATAAAACAGTTGAGTTGCTGCCCTGATGAAATTAGCTGGTCTTGATTGTTTCAAAGCTGATATCAGTTACCCATAAACCGCAACAAACGTTTCAATTTTGCGCATTGAAAATGTCACAACTATAGAACATTGAAAGTGTTTCAGCAAAAACAAAAGGCCCAGTATCTTGTGAAAAAATCCACAAATACAGGATTTACCTTATTCAAATAACGGGGCCCTATACAGCACCAACCATATAATTCATCTTGTATATTGATACATTCTGAAGTTACAAAAGGACTAGTTATGAGCACATTTAGTCTATAGTTACTAAAGGCATGACAGGGTTTTACTCAAGGTGGGTGAATTGACCATAATAACCTACAGGAACTTAAGACATACTGGAGAGTTTGTTTTGACAAAGACAAAGCATGACAGACCTTTGGCATCTTCTTGTCAAAATTGCTTGGACAACCTCTCAACTGGTAATCATAGGGAACTCACAAAAAATCAAGTATGGCTAAACTCCATCTAGAAGCCATTTTGATTTTTATAGCTTCAACTTTTAGCTTCAATTTTGGATAAGTTTTTTACTCAGTATAAAAATTGTCAATTCAAGGGGAAAATGTTCTGCCATTAAACTTCTCCATCTGCACATTCAGTGGTAATAAGTAAATTTTGTAGAATTTATTGGCATTAATGTTCTTAGTTTTAGGAGTTAAATTCTATTAATTTAAGCCTAATAGATAGAAATTTACAAAATAATGACCATTTGGAAGTTGAGTAGAAATAAAGGGTAAGTGCAGGAGACATTTTGTTTCAGTATTCTGTTAGGGATGGAAATATGCCCACGTGAATTCCATTTAAGCTACAAGTTTTTTTGTAATAATTTCAGTATGCAAAGAAATTGATTGTTTTAGGAGATGCAGAAACCCAGATTAAAGTCGCTAATCTAGCAGCTTGCTattgtaattataattaaatataaataattataTTGTTGTGGCAGCTTTGGTTTACTCTAGAACTTCAGGAAAAACTCCTTGACTGTTTTGATTAAAGAAAGTGACTTAAGCTTATCAAAGAATAACCTAAACCTTGTAAGTTAGTTTCCTGTAAAATATTTGAAATATGCAGGCGAAAGCAAAGGTCAAAATCAAGTTCAAGTTTAAATGATTTTGATTATTAATTGCCTTTGTCCCTTAACCGGTTTATTCTTCATACTGGTTAGGAAACAAGGAAATCATTTCAAAGTCATTTTTAAATTGAACTTCATCTTGACATGCATCATTAATCATTTTACATTCTTCTCTTTCTTTAAGTAAAGCATGAATTGATGAATTTGACCATGAAGTTAACTTAATTTGGCATTGACAATGCTTCTCCATGGCATTATGCCATTGAATTCCTTCATCTTTGCGAAGATTTAGACTTTTGATGTCGTCTGTCAAAGTTTTTGTTACAGTTTTTTTTTTCTTGGAGAATTTTTTTTCTGGAATTCATTGGTAATTTTTTTTCTTTTGTATCATTTTGAAACTTTATAATAATTGTTATAGAGGAAGCATGAACCAAGAAGGAAATGTTTATTAGTTATAATAATAATAATTATTGTGATATGTAAGGGGCATTACTCTCTGCCATTAATAATTATTCATTAATAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9V9J3	Tyrosine-protein kinase Src42A OS=Drosophila melanogaster OX=7227 GN=Src42A PE=1 SV=1
P42690	Tyrosine-protein kinase isoform SRK4 OS=Spongilla lacustris OX=6055 GN=SRK1 PE=2 SV=1
P42686	Tyrosine-protein kinase isoform SRK1 OS=Spongilla lacustris OX=6055 GN=SRK1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000422 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050198 all species →	Family	Non-receptor tyrosine kinases involved in cell signaling	Interproscan
IPR020635 all species →	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24418 all species →	TYROSINE-PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004713 all species →	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0004715 all species →	Molecular Function	non-membrane spanning protein tyrosine kinase activity	Interproscan
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0007169 all species →	Biological Process	cell surface receptor protein tyrosine kinase signaling pathway	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0031234 all species →	Cellular Component	extrinsic component of cytoplasmic side of plasma membrane	Interproscan
GO:0045087 all species →	Biological Process	innate immune response	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08892	FRK, PTK5; fyn-related kinase	EC:2.7.10.2	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.