Gene detail

Detailed information of amic_s0068.g81.t1 in Acropora microphthalma

Genomic Location: sc0000068_pilon:1042822...1055096
NR annotation: XP_029185356.2, IQ motif and ankyrin repeat domain-containing protein 1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0068.g81.t1

ATATATTTTTCTTTTGTTTATTTTCACGTTAACAAGAGAAATAAATTGAATAGAGATGGCCCCAAAAAAGGCATCTCTTGCAGCCAAGACGGGAACCAAAACTTTAACGCAGAAGCCTGCGAGCAAAGGTGCTCCGAGCCCCACAAAATCGCCTGGAAAGAAGGTTGTAACGACGGCAGTATCTAAGAAAGGAGCTAATGGTTCAAAGACGGCGCCAACTAAGAAAACCAGCACTTCCCCAACCAAAGGGAAAGCAAAAGGAAAGGAAAATGTTGCAGCTAATCAGCCAAAAGGAAAGAAGTGGACTTACCAGGATGAATCTGCAGTGGTAATACAAAAATACATGCGACGACATCTTGCCaaaaaagaattggaaaaaagaaaaaaggagaaacaaGACTATGAAGATCTTATGGACAAGATTCAGAAGGAGGCGTGGTTGAAGCTGGTGCAGATGGAAAGAGAGGAAGCGGAAAAAGAACGCAAGAAAGAGGAAGAAGAAAGACGGAAGAGAAAAGAGGAAGCAAAGAGGAGAAGTAGGATACTAGAAGCTGCATTTGATGGTGATAATGATGAAATTCTTGCTGTGCTTGAAGAGGCTTTCGAGGAAGATTCTAAGCGATCAGACCTATCAGAGCCTGCCAGGCGATCCCTTATAACAAGACACCAACTGGCTCTTGTGGATTGCGAGGATGCTAACAATAACACACCACTCTCAGAAGCAGCAGGAGGAGGCCATGTTGATACCATAAAAATGCTAATTCAAAGAGGAGCAAATTTGAATTCACGAGGGAGGTACAAGCGAGTACCATTGTGGCGCGCAGCATTTGGAGGACATATCCAAGCAGTTCAGACTCTACTAGAGTATGGAGGCGATCCAAGATTAGTGGCAGATGATGGAACAAATGCATTGCAGGTTGCAGCAATCCCGGCGGTTGAACAGGTTTTCCAAGAATGGGACATCAAACAGACAGATAAGCTGCTAGAAAAACTAGAAACAGAGAAGAATAACAGACAAGAAGAGGAAAGGAAGCTAAGAGAGGCAGAAAGCAACAGACTAGAAAGGGAAATAGCAAAAGCTGAGAAAGAGAACCAAGCCCACCAGAAAGAGCTTGCTAAAGCGCACTGTGAATTGAACAAAAGGATTCATGAGCATGATCGTTGCATGGCAGAAGGAAAGACAGACAAGCAAGAAGTCACTTTACAGGCAATTCATGATGCTGAGGCAGTGCTTGCACATGCACAGAAGAAGGCTGAAGCCTCAAAGGAAGCCCTTGCCCAGGCTAAACTTAAATTGCGAGAACAAAATAAAACAGAGGAAAGTTCAACAGATGCAGCAGCCAATGTGAAAGGTGTGAAGGTGTTACTCAGAGACCTTGATGATGTGCTGTTTAGAGATGTTGGGGGCAAAATTGCAGAAGATGGAAGATGGCCTTTGCTGATTGACACTTCTCCGCAGAGTTCCACATTTTTGCGATACCGGGACACAAACTACATCAATGCACTCAACCCAAAACATGTCGAACCTGAAGTAATTCGTCTGGCGCTCCTTGGAGGTTTGAGGTATGGAAAGCCGGTTGTTTTAGATATGATGGAAGTGGACATGTTTGACACAGTCGCCATGAGATTTGACGATGTTCAGAACGGGCTTATGTCTTCTCTGATGACGAAAGACCTACTCAAGAATAACAAATATCTGGAGCTCATCCGTCCATGCGATGGAGACGAGTACAGCAAAACTAGTTTCCTCGGTGCAAGAATTGACAAATTCATGTTTATAATAGTAACTCAACAGTGGAATCCGCCTGAAACATTAATGGACCAGACATATCCAATTCGAGTCATAATACCCTCCAGACCTGATGTATAGTTAGTCAAGTGAATATTATAAGCCAGGCTCTTACTTTGCACCAATGGTGCGTGCAATCTCCATTCATGTTCGTACTCTAACCGAAGTTCCTATTTcggctacggcggataaaacgtcacttaaaaatagacatttgcgcaaCACTGTAATTAATAACATATATGTCTGGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3TYL0	IQ motif and ankyrin repeat domain-containing protein 1 OS=Mus musculus OX=10090 GN=Iqank1 PE=1 SV=3
A8MXQ7	IQ motif and ankyrin repeat domain-containing protein 1 OS=Homo sapiens OX=9606 GN=IQANK1 PE=4 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005717 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24183 all species →	FIBRONECTIN TYPE 3 AND ANKYRIN REPEAT DOMAINS PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0051091 all species →	Biological Process	positive regulation of DNA-binding transcription factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0068.g81.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.