Gene detail

Detailed information of amic_s0069.g20.t1 in Acropora microphthalma

Genomic Location: sc0000069_pilon:298476...302510
NR annotation: XP_029192344.2, Golgi phosphoprotein 3-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0069.g20.t1

TTGGCCGGCCATTTTACGGGAGAAACGCTGTAGAGAACCTTCTTTTATAGTGTTAGTTTTATATTTGTTTCGCTCTTCTCTTCCTCTCTTGTCGAAAAATGGCAACGAGAAGGACAGGGACGCAAGTGCAGCGAAGTACAATGTCCAGTGGAATCTCACCCGAGGACAATCCTGACATCGAACTGAATGAAGGTTACGATAGCGATAAGGAGTCAGGCGACAGGAAAGAAACAAGACTGACTTTGATGGAAGAAGTGCTGCTGTTGGGGCTCAAAGATAAGGAGGGTTACACGTCGTTTTGGAATGACTGCATTTCGTCAGGCCTTCGTGGGTGCATGATGATCGAATTGGGTTTGAGGGGAAGAATAGAACTCGAGAAGACTGGAATGCGACGGAAGAGCATGTTGAACAGAAGAATTTTGTGCAAGAGTGATAACTTAACTGGCGATGTACTTTTGGATGAAGCCTTGAAACACATCAAAGAAACAGAGCCGCCCGATACAGCTCAGAATTGGATTGAACTTTTGAGCGGTGAAACATGGAATCCACTGAAGCTAAGGTACCAGCTTAGAAATGTTCGTGAGCGACTTGCAAAAAATTTAGTAGAGAAGGGTGTCCTTACCACAGAGAAACAGAATTTTCTTCTCTTCGATATGACGACACACCCCCTGGTTGATTCTGTTTCTAAATCAAGAGTTATAAAGAAAGTCCAGGATGCTGTTCTAACTAAGTGGGTCAATGATGCACACAGGATGGACAAAAGGGTTTTGTCGTTGATTTATCTAGCGCATTCATCTGATGTTCTGGAAAATGCATTTGCACCACTTTCAGACGAAGATTACGAACTTGCAATGAAAAGGGTGCGCGATCTTTTAGAACTTGAACCTGAGGAACAAGCGCAGAAACCGAATGCTAATGAGGTCATGTGGTGTGTTATCTCCGCATTTATAAAATAAATAACCATGCACTAAATATAGCACAGTAAATCATTCAAGGTCTTTTTGAAGCCCTCTTACGCGGACTTTTGGGTTAAATCAGTATAATTTGTATGCCAACTTGCAGTCCAGTGAATTTGAAGCAATGAAGTATGAAATTGCCAAAGGCAATTTATTGTAAAAACATAGAAGGAAGTCTTTTTAAGCTTAAGCTCATTTGATTAGTTAAACCGTGTGATGTCATAACTTTGTCGTGGACTTTTTATGTTAGAAATAATAATAATTGTCCATAAGGAATTTAAGGACAAATAGAATATTAGTTTGAGGCAAACCAATCTGAGTGCTCCATTTTGTGTTAACATGCTTCAATCCTACCTCAATCAGGCATTTCCAGTTGCTCTTAGAATACCAATCAAATGTTGGTGACATGCAAGGTGACAAAAAAAtagtgcagttttcaaatgactgtcgaaagtaattacgttattgcgattgctacgcttaatgattggcttaaaagacttgtgccagtttttcagccaatgagaagtaaaaccagaaccaatcgggcatgtatgcgtgatttttcccgcgctttgagcaagtttcagataattgctaggaattgtgattggttcatcgcggtgtttgcccctgttgtgattggttggagtaattgctttggttttggtttttcgacagtcatttgaaaaccacggtatgtgtacattaatccgaaagtcactcaaTGTTGGTTTTGTGGGTACTTtatatatatttatatatatctaGAGAGGGAGACGTAAAGTAATTTTTGTTTATAACATACAGGAATATAAAGGTAATTTTGAGTAAGACTTGTGCACATTTTAGCTTCTTGTGTAAATTTAGATTAGATTTCATGTTCACTACAAGGAAGTAGGGCCCAGTACAGGCTGACAGTGATGTGTAAAGGTCTTGTCCTGAGGGACTTCTCTACCCTGAAAATGGGTGAAAGTGTGAAAAATTCAAATTCTGCCAGCTTTTAAAGGCATCACAGACCAGGGCTGTTAGTGGCTTTTCTGTGGCCCTTATTAATATAGAATTCTTTTGAACTGCAAGAACCTTTCACCCAGTGCTGTTTGCCCTTCTACTGCTTCCCCTCACTTTATCATGAACAGACTATAGAAATAAATCAACAAATTGGAGCAAAATCAGCTCATAACATTGCTGGATGTGAATCAAGTCTGTTGTTACACTGATTGATGACAGTGATAAAAATTGGAGATGGTTGTTTAGGTCAGCAATAAAGATGCTAAAATTTCTCAGAAAACCAAGTGCCGAGTATGTAATAAAGCTGAAAGTAACTGATATTGAGGGAATGTTGGTCATATTTTCAAAGATAATCTGAGCAGTTTGTAAGGAACTTTGGTGGTGATTTGCTAGTAGTAGTGTCGTGGTGGTCACTTTACCCCCTTAACTCAATGCTGTACAAGATCCACTTTTGCCAATGAAAGATGAAGTAGTCAACATTCTCCTAACAAATAGTCTGTATTTGAAAAGCAGACAGGCTGTTGGCAAAAGTGTGTCAGAGCTAGTGATAATTATCTGAATTATGTCAAAGAATTTGATTGCTCAGTGTCAAAAACTATGAAAACGGGTCTTGAACAATTTTGAATAGGATATTACTCTGCTCTGTAATAAGCTATGGTGCAACTGGATGTGTGTACATTGGTCAGGGATGATTATTTATGCACTTCAAACATTGTGAAAAACACAAAAACTGAATTTAAATTACCTGTCCTATCTTACTATTTCTGTTTTTACTTTTTTGTTAAACAACAGTACTGTTATTATCTTACAATAGTAAGTAGCTTCCCATTGTTCTTTTTCCTACCTGCAAGATTAATGTTTCAGAGCAAAGCAGTAGATTAATGCAGATAATGGTAATTTTTGGGTCAGATATTAAACCATGGTAACCTACAACACTCAGGGACTTATTCATTTCTTTTGTAATAAATTGTTACGCATAGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CRA5	Golgi phosphoprotein 3 OS=Mus musculus OX=10090 GN=Golph3 PE=1 SV=1
Q9ERE4	Golgi phosphoprotein 3 OS=Rattus norvegicus OX=10116 GN=Golph3 PE=1 SV=1
Q9H4A6	Golgi phosphoprotein 3 OS=Homo sapiens OX=9606 GN=GOLPH3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05719 all species →	GPP34	Golgi phosphoprotein 3 (GPP34)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008628 all species →	Family	Golgi phosphoprotein 3-like	Interproscan
IPR038261 all species →	Homologous_superfamily	Golgi phosphoprotein 3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12704 all species →	TRANS-GOLGI PROTEIN GMX33	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005802 all species →	Cellular Component	trans-Golgi network	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006890 all species →	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0007030 all species →	Biological Process	Golgi organization	Interproscan
GO:0031985 all species →	Cellular Component	Golgi cisterna	Interproscan
GO:0043001 all species →	Biological Process	Golgi to plasma membrane protein transport	Interproscan
GO:0048194 all species →	Biological Process	Golgi vesicle budding	Interproscan
GO:0070273 all species →	Molecular Function	phosphatidylinositol-4-phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15620	GOLPH3, GPP34; golgi phosphoprotein 3	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.